Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003506

Physical Location & Seq

Genomic Coordinates Reverse (-)

18292239 .. 18293063

Gene Structure 825 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G243900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGAAGGCAGGAAAACCAAGGGCAGGCAAAAGATTGAAATGAAGAGGATTGAAGACCAAGATGATCGCCTTGTTACTTTCTCGAAAAGGCGATCTGGCGTGTATAAGAAGGCAAGTGAGTTAGCAACCCTATGCGGCGCTGAGGTTGGTGTGGTGGTATTTTCACCCTCCGGAAAGCCATTTTCCTACGCTAACTCTTCCATTGACTCAATAGCGAACCGATTTCTAAATGGCCACCGCCACCATCATCAGCACCATGATTATGATCATGATCAAAATCATGATAATATTGATGATAATATAATGAATCTTGATGCTATTGATCGGAGCCGCCATACTATTGTGGAGGCCTACAGGCAGGTAAGAATCGATGAGATGAATAAGAAACACAATGAGTTGGTGAGCGAGCTAGAAGTTGAGAGGGAGCGAGGGAAAGCGCTTCAACAGAGGATGAAAGCAAAAGCAAAAGAAATATCATCATCAGCAGAAGCAGCTGGAAGCATTCGAAGCAGAAGTAGCAGCAGCAAGAGCCAGTTACAGGGCTGGTGGGAGGCTCCTATTGAGGAGCTCGACTTGAAAGGACTCAAACAATTGCATGCTTCCTTTCAACACCTCTGCAATGATCTCCGCCCTGCTCTCACCTGCCTCAACAACCTCAATCCTCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04011 ko04111 map04011 map04111

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

223

Amino Acids

25.41

Weight (kDa)

8.93

Isoelectric Point (pI)

61.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28450 AT1G28460 AT1G29962 AT1G54760 AT3G04100
fragaria_vesca	FvH4_6g21070
malus_domestica	MD05G1287200.v1.1 MD10G1264600.v1.1 MD13G1257500.v1.1
prunus_persica	Prupe.1G087700_v2.0.a1 Prupe.4G077700_v2.0.a1 Prupe.5G243900_v2.0.a1
pyrus_communis	pycom05g26570 pycom10g22070
rosa_chinensis	RchiOBHm_Chr3g0477441 RchiOBHm_Chr3g0477451
rosa_laevigata	RLG00000023719 RLG00000023721
rosa_multiflora	Rmu_sc0005234.1_g000012 Rmu_ssc0000341.1_g000014 Rmu_ssc0000341.1_g000016
rosa_roxburghii	Rroxscaffold_6G00404150 Rroxscaffold_6G00404620 Rroxscaffold_6G00404630
rosa_rugosa	Rorug03G0160800 Rorug03G0160900
rosa_samantha	Rh3AG211100 Rh3AG211200 Rh3BG244500 Rh3BG244600 Rh3CG238300 Rh3CG238500 Rh3DG238000
rosa_wichuraiana	Rw3G019130 Rw3G019140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	650
Acc36I	ACCTGC	2 cut(s)	349, 650
AccIII	TCCGGA	1 cut(s)	170
AciI	CCGC	4 cut(s)	135, 238, 331, 628
AcoI	YGGCCR	1 cut(s)	232
AfeI	AGCGCT	1 cut(s)	438
AfiI	CCNNNNNNNGG	2 cut(s)	24, 538
AgsI	TTSAA	5 cut(s)	38, 53, 443, 577, 608
AluBI	AGCT	3 cut(s)	409, 494, 568
AluI	AGCT	3 cut(s)	409, 494, 568
Alw21I	GWGCWC	1 cut(s)	570
Aor13HI	TCCGGA	1 cut(s)	170
Aor51HI	AGCGCT	1 cut(s)	438
AoxI	GGCC	2 cut(s)	232, 348
ApeKI	GCWGC	3 cut(s)	491, 519, 522
AspLEI	GCGC	2 cut(s)	140, 439
AsuHPI	GGTGA	3 cut(s)	156, 412, 631
AsuII	TTCGAA	1 cut(s)	505
BalI	TGGCCA	1 cut(s)	234
BanII	GRGCYC	1 cut(s)	570
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	570
BbvCI	CCTCAGC	1 cut(s)	141
BbvI	GCAGC	3 cut(s)	503, 531, 534
BccI	CCATC	1 cut(s)	252
BclI	TGATCA	2 cut(s)	265, 271
BfaI	CTAG	2 cut(s)	410, 667
BfmI	CTRYAG	1 cut(s)	352
BfoI	RGCGCY	2 cut(s)	141, 440
BfuAI	ACCTGC	2 cut(s)	349, 650
BisI	GCNGC	5 cut(s)	136, 331, 492, 520, 523
BlsI	GCNGC	5 cut(s)	137, 332, 493, 521, 524
BmiI	GGNNCC	2 cut(s)	329, 555
BmsI	GCATC	1 cut(s)	304
BpiI	GAAGAC	1 cut(s)	60
Bpu10I	CCTNAGC	1 cut(s)	141
Bpu14I	TTCGAA	1 cut(s)	505
Bsa29I	ATCGAT	1 cut(s)	369
BsaBI	GATNNNNATC	3 cut(s)	264, 270, 276
BsaJI	CCNNGG	1 cut(s)	18
BsaWI	WCCGGW	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 538
Bse1I	ACTGG	1 cut(s)	532
Bse3DI	GCAATG	1 cut(s)	625
Bse8I	GATNNNNATC	3 cut(s)	264, 270, 276
BseAI	TCCGGA	1 cut(s)	170
BseCI	ATCGAT	1 cut(s)	369
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	456
BseJI	GATNNNNATC	3 cut(s)	264, 270, 276
BseLI	CCNNNNNNNGG	2 cut(s)	24, 538
BseMI	GCAATG	1 cut(s)	625
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	532
BseRI	GAGGAG	1 cut(s)	578
BseXI	GCAGC	3 cut(s)	503, 531, 534
BshFI	GGCC	2 cut(s)	234, 350
BshVI	ATCGAT	1 cut(s)	369
BsiHKAI	GWGCWC	1 cut(s)	570
BsiSI	CCGG	1 cut(s)	171
BslI	CCNNNNNNNGG	2 cut(s)	24, 538
BsmI	GAATGC	1 cut(s)	501
BsnI	GGCC	2 cut(s)	234, 350
Bsp119I	TTCGAA	1 cut(s)	505
Bsp1286I	GDGCHC	1 cut(s)	570
Bsp13I	TCCGGA	1 cut(s)	170
Bsp143I	GATC	6 cut(s)	64, 92, 265, 271, 322, 622
BspACI	CCGC	4 cut(s)	135, 238, 331, 628
BspANI	GGCC	2 cut(s)	234, 350
BspCNI	CTCAG	1 cut(s)	133
BspDI	ATCGAT	1 cut(s)	369
BspEI	TCCGGA	1 cut(s)	170
BspHI	TCATGA	2 cut(s)	268, 280
BspLI	GGNNCC	2 cut(s)	329, 555
BspMI	ACCTGC	2 cut(s)	349, 650
BspT104I	TTCGAA	1 cut(s)	505
BsrDI	GCAATG	1 cut(s)	625
BsrI	ACTGG	1 cut(s)	532
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	6 cut(s)	64, 92, 265, 271, 322, 622
BssT1I	CCWWGG	1 cut(s)	18
Bst6I	CTCTTC	2 cut(s)	38, 202
BstBI	TTCGAA	1 cut(s)	505
BstC8I	GCNNGC	3 cut(s)	26, 407, 597
BstDEI	CTNAG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	456
BstH2I	RGCGCY	2 cut(s)	141, 440
BstHHI	GCGC	2 cut(s)	140, 439
BstKTI	GATC	6 cut(s)	67, 95, 268, 274, 325, 625
BstMBI	GATC	6 cut(s)	64, 92, 265, 271, 322, 622
BstMWI	GCNNNNNNNGC	4 cut(s)	491, 507, 516, 528
BstNSI	RCATGY	1 cut(s)	599
BstSFI	CTRYAG	1 cut(s)	352
BstV1I	GCAGC	3 cut(s)	503, 531, 534
BstV2I	GAAGAC	1 cut(s)	60
Bsu15I	ATCGAT	1 cut(s)	369
BsuRI	GGCC	2 cut(s)	234, 350
BsuTUI	ATCGAT	1 cut(s)	369
BtsCI	GGATG	1 cut(s)	456
BveI	ACCTGC	2 cut(s)	349, 650
Cac8I	GCNNGC	3 cut(s)	26, 407, 597
CciI	TCATGA	2 cut(s)	268, 280
CfoI	GCGC	2 cut(s)	140, 439
ClaI	ATCGAT	1 cut(s)	369
CviAII	CATG	4 cut(s)	257, 269, 281, 596
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	6 cut(s)	66, 94, 267, 273, 324, 624
DpnII	GATC	6 cut(s)	64, 92, 265, 271, 322, 622
EaeI	YGGCCR	1 cut(s)	232
Eam1104I	CTCTTC	2 cut(s)	38, 202
EarI	CTCTTC	2 cut(s)	38, 202
EciI	GGCGGA	1 cut(s)	617
Ecl136II	GAGCTC	1 cut(s)	568
Eco130I	CCWWGG	1 cut(s)	18
Eco147I	AGGCCT	1 cut(s)	350
Eco24I	GRGCYC	1 cut(s)	570
Eco47III	AGCGCT	1 cut(s)	438
Eco53kI	GAGCTC	1 cut(s)	568
EcoICRI	GAGCTC	1 cut(s)	568
EcoT14I	CCWWGG	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	570
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	4 cut(s)	260, 272, 284, 599
FaiI	YATR	9 cut(s)	105, 133, 258, 264, 270, 282, 302, 336, 597
FatI	CATG	4 cut(s)	256, 268, 280, 595
FbaI	TGATCA	2 cut(s)	265, 271
Fnu4HI	GCNGC	5 cut(s)	136, 331, 492, 520, 523
FokI	GGATG	1 cut(s)	463
FriOI	GRGCYC	1 cut(s)	570
Fsp4HI	GCNGC	5 cut(s)	136, 331, 492, 520, 523
FspBI	CTAG	2 cut(s)	410, 667
GlaI	GCGC	2 cut(s)	139, 438
GluI	GCNGC	5 cut(s)	136, 331, 492, 520, 523
HaeII	RGCGCY	2 cut(s)	141, 440
HaeIII	GGCC	2 cut(s)	234, 350
HapII	CCGG	1 cut(s)	171
HhaI	GCGC	2 cut(s)	140, 439
Hin1II	CATG	4 cut(s)	260, 272, 284, 599
Hin6I	GCGC	2 cut(s)	138, 437
HinP1I	GCGC	2 cut(s)	138, 437
HinfI	GANTC	4 cut(s)	206, 307, 366, 582
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	3 cut(s)	156, 412, 631
Hpy188I	TCNGA	1 cut(s)	327
Hpy188III	TCNNGA	5 cut(s)	82, 171, 269, 281, 311
HpyAV	CCTTC	1 cut(s)	103
HpyCH4V	TGCA	2 cut(s)	595, 618
HpyF10VI	GCNNNNNNNGC	4 cut(s)	491, 507, 516, 528
HpyF3I	CTNAG	1 cut(s)	141
Hsp92II	CATG	4 cut(s)	260, 272, 284, 599
HspAI	GCGC	2 cut(s)	138, 437
Kpn2I	TCCGGA	1 cut(s)	170
Ksp22I	TGATCA	2 cut(s)	265, 271
Kzo9I	GATC	6 cut(s)	64, 92, 265, 271, 322, 622
LmnI	GCTCC	4 cut(s)	327, 424, 559, 565
Lsp1109I	GCAGC	3 cut(s)	503, 531, 534
LweI	GCATC	1 cut(s)	304
MaeI	CTAG	2 cut(s)	410, 667
MaeIII	GTNAC	2 cut(s)	73, 534
MalI	GATC	6 cut(s)	66, 94, 267, 273, 324, 624
MboI	GATC	6 cut(s)	64, 92, 265, 271, 322, 622
MboII	GAAGA	3 cut(s)	55, 65, 189
MfeI	CAATTG	1 cut(s)	590
MhlI	GDGCHC	1 cut(s)	570
MlsI	TGGCCA	1 cut(s)	234
MluCI	AATT	1 cut(s)	590
MluNI	TGGCCA	1 cut(s)	234
MlyI	GAGTC	2 cut(s)	200, 576
Mox20I	TGGCCA	1 cut(s)	234
MroI	TCCGGA	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	261
Msp20I	TGGCCA	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	1 cut(s)	171
MunI	CAATTG	1 cut(s)	590
Mva1269I	GAATGC	1 cut(s)	501
MwoI	GCNNNNNNNGC	4 cut(s)	491, 507, 516, 528
NdeII	GATC	6 cut(s)	64, 92, 265, 271, 322, 622
NlaIII	CATG	4 cut(s)	260, 272, 284, 599
NlaIV	GGNNCC	2 cut(s)	329, 555
NspI	RCATGY	1 cut(s)	599
NspV	TTCGAA	1 cut(s)	505
PaeI	GCATGC	1 cut(s)	599
PagI	TCATGA	2 cut(s)	268, 280
PaqCI	CACCTGC	1 cut(s)	650
PceI	AGGCCT	1 cut(s)	350
PctI	GAATGC	1 cut(s)	501
PfeI	GAWTC	2 cut(s)	307, 366
PkrI	GCNGC	5 cut(s)	137, 332, 493, 521, 524
PleI	GAGTC	2 cut(s)	200, 576
PpsI	GAGTC	2 cut(s)	200, 576
Psp124BI	GAGCTC	1 cut(s)	570
PspN4I	GGNNCC	2 cut(s)	329, 555
PvuII	CAGCTG	1 cut(s)	494
RseI	CAYNNNNRTG	1 cut(s)	261
SacI	GAGCTC	1 cut(s)	570
SatI	GCNGC	5 cut(s)	136, 331, 492, 520, 523
Sau3AI	GATC	6 cut(s)	64, 92, 265, 271, 322, 622
SchI	GAGTC	2 cut(s)	200, 576
SduI	GDGCHC	1 cut(s)	570
SetI	ASST	8 cut(s)	147, 363, 411, 496, 570, 615, 644, 657
SfaNI	GCATC	1 cut(s)	304
SfcI	CTRYAG	1 cut(s)	352
SfuI	TTCGAA	1 cut(s)	505
SmiMI	CAYNNNNRTG	1 cut(s)	261
SphI	GCATGC	1 cut(s)	599
Sse9I	AATT	1 cut(s)	590
SseBI	AGGCCT	1 cut(s)	350
SsiI	CCGC	4 cut(s)	135, 238, 331, 628
SspI	AATATT	1 cut(s)	289
SspMI	CTAG	2 cut(s)	410, 667
SstI	GAGCTC	1 cut(s)	570
StuI	AGGCCT	1 cut(s)	350
StyI	CCWWGG	1 cut(s)	18
TaqI	TCGA	4 cut(s)	83, 369, 505, 570
TasI	AATT	1 cut(s)	590
TauI	GCSGC	2 cut(s)	138, 333
TfiI	GAWTC	2 cut(s)	307, 366
TseI	GCWGC	3 cut(s)	491, 519, 522
TspDTI	ATGAA	4 cut(s)	56, 320, 392, 467
XceI	RCATGY	1 cut(s)	599
XspI	CTAG	2 cut(s)	410, 667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.