Rroxscaffold_6G00404620
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0003506
Physical Location & Seq
Reverse (-)
27104082 .. 27104693
612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00404620.1

Sequence Viewer

Length: 612 bp
ATGGAAGGAGGCAAGAAAACAAAAGGCAGGCAAAAGATTCCAATAAAAAAGATTGAGAACGCTAACGAACGTCAAGTGACGTTTTCTAAACGAAAATCTGGCGTTATCAGAAAAGCCAGTGAAATGTCGACCCTCACTGGTGCACATGTTGGTTTAGTGATATTCTCCGAGGCCGGGAAACCCTACTCTTTCGGCAGTCCCTCTATTGAATCTGTAGCCGGCCGATTCTTTCCGGAGCTACAAAACCTAAACCAAATTAGTGATGATGCCCGGGCTGTACTTGAGGCTAATCGCCAGGCAAGAGTCGACGGTATCCTCAGGATACACAACGACTTAGAAAGCAAGCTGAAAGAAGACAGAGATCGAGCAAAGGAGCTTCGGAAAAGAGAAAGGGCAAGAACAAGCAAAGATCAGGGCGGCCCTGGCTGGTGGGAGAAACCTATGGAGGGGCTTGAGTTAGCGGAACTCAAACAGATGCATTCTTCATTTGAACGTCTCCAGAATGATCTATCCTCCTATCTCAAAAGCACCGCCTCTGCTGGTGGCTCCTCATCTGGCGGCGCAACCGGTAACCCTCCTGGTACATTGCCTTCACGCTTCGGATTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

203

Amino Acids

22.33

Weight (kDa)

9.81

Isoelectric Point (pI)

43.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 17 - 64 9.3e-22 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 128, 306
AccIII TCCGGA 1 cut(s) 232
AciI CCGC 4 cut(s) 417, 461, 531, 558
AcoI YGGCCR 1 cut(s) 220
AfaI GTAC 2 cut(s) 279, 583
AfiI CCNNNNNNNGG 2 cut(s) 174, 446
AflIII ACRYGT 1 cut(s) 145
AgeI ACCGGT 1 cut(s) 566
AgsI TTSAA 2 cut(s) 209, 491
AjnI CCWGG 3 cut(s) 294, 421, 577
AluBI AGCT 3 cut(s) 238, 346, 376
AluI AGCT 3 cut(s) 238, 346, 376
Alw21I GWGCWC 1 cut(s) 145
Alw26I GTCTC 1 cut(s) 500
Alw44I GTGCAC 1 cut(s) 141
Ama87I CYCGRG 1 cut(s) 270
Aor13HI TCCGGA 1 cut(s) 232
AoxI GGCC 3 cut(s) 171, 220, 418
ApaLI GTGCAC 1 cut(s) 141
AsiGI ACCGGT 1 cut(s) 566
AspLEI GCGC 1 cut(s) 563
AspS9I GGNCC 1 cut(s) 419
AsuC2I CCSGG 3 cut(s) 175, 271, 272
AvaI CYCGRG 1 cut(s) 270
AxyI CCTNAGG 1 cut(s) 317
BaeGI GKGCMC 1 cut(s) 145
BarI GAAGNNNNNNTAC 2 cut(s) 574, 606
BbsI GAAGAC 1 cut(s) 360
Bbv12I GWGCWC 1 cut(s) 145
BciT130I CCWGG 3 cut(s) 296, 423, 579
BciVI GTATCC 2 cut(s) 315, 323
BcnI CCSGG 3 cut(s) 175, 271, 272
BcoDI GTCTC 1 cut(s) 500
BfmI CTRYAG 1 cut(s) 213
BfuI GTATCC 2 cut(s) 315, 323
BisI GCNGC 2 cut(s) 418, 559
BlsI GCNGC 2 cut(s) 419, 560
Bme1390I CCNGG 6 cut(s) 175, 271, 272, 296, 423, 579
BmeT110I CYCGRG 1 cut(s) 270
BmgT120I GGNCC 1 cut(s) 419
BmiI GGNNCC 1 cut(s) 547
BmrFI CCNGG 6 cut(s) 175, 271, 272, 296, 423, 579
BmsI GCATC 2 cut(s) 256, 465
BpiI GAAGAC 1 cut(s) 360
BpmI CTGGAG 1 cut(s) 482
BpuEI CTTGAG 2 cut(s) 302, 473
BpuMI CCSGG 3 cut(s) 175, 271, 272
BsaJI CCNNGG 3 cut(s) 168, 270, 421
BsaWI WCCGGW 2 cut(s) 232, 566
Bsc4I CCNNNNNNNGG 2 cut(s) 174, 446
Bse118I RCCGGY 2 cut(s) 218, 566
Bse1I ACTGG 2 cut(s) 117, 142
Bse21I CCTNAGG 1 cut(s) 317
Bse3DI GCAATG 1 cut(s) 584
BseAI TCCGGA 1 cut(s) 232
BseBI CCWGG 3 cut(s) 296, 423, 579
BseDI CCNNGG 3 cut(s) 168, 270, 421
BseLI CCNNNNNNNGG 2 cut(s) 174, 446
BseMI GCAATG 1 cut(s) 584
BseMII CTCAG 1 cut(s) 331
BseNI ACTGG 2 cut(s) 117, 142
BseRI GAGGAG 1 cut(s) 538
BseSI GKGCMC 1 cut(s) 145
BseX3I CGGCCG 1 cut(s) 220
Bsh1285I CGRYCG 1 cut(s) 223
BshFI GGCC 3 cut(s) 173, 222, 420
BshTI ACCGGT 1 cut(s) 566
BsiEI CGRYCG 1 cut(s) 223
BsiHKAI GWGCWC 1 cut(s) 145
BsiHKCI CYCGRG 1 cut(s) 270
BsiSI CCGG 5 cut(s) 174, 219, 233, 271, 567
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 2 cut(s) 174, 446
BsmAI GTCTC 1 cut(s) 500
BsmBI CGTCTC 1 cut(s) 500
BsmFI GGGAC 1 cut(s) 183
BsmI GAATGC 1 cut(s) 478
BsnI GGCC 3 cut(s) 173, 222, 420
BsoBI CYCGRG 1 cut(s) 270
Bsp1286I GDGCHC 1 cut(s) 145
Bsp13I TCCGGA 1 cut(s) 232
Bsp143I GATC 3 cut(s) 361, 409, 505
BspACI CCGC 4 cut(s) 417, 461, 531, 558
BspANI GGCC 3 cut(s) 173, 222, 420
BspCNI CTCAG 1 cut(s) 330
BspEI TCCGGA 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 547
BsrDI GCAATG 1 cut(s) 584
BsrFI RCCGGY 2 cut(s) 218, 566
BsrI ACTGG 2 cut(s) 117, 142
BssAI RCCGGY 2 cut(s) 218, 566
BssECI CCNNGG 3 cut(s) 168, 270, 421
BssMI GATC 3 cut(s) 361, 409, 505
Bst2UI CCWGG 3 cut(s) 296, 423, 579
Bst4CI ACNGT 1 cut(s) 311
BstC8I GCNNGC 3 cut(s) 29, 220, 344
BstDEI CTNAG 2 cut(s) 317, 334
BstEII GGTNACC 1 cut(s) 569
BstHHI GCGC 1 cut(s) 563
BstKTI GATC 3 cut(s) 364, 412, 508
BstMAI GTCTC 1 cut(s) 500
BstMBI GATC 3 cut(s) 361, 409, 505
BstMCI CGRYCG 1 cut(s) 223
BstMWI GCNNNNNNNGC 1 cut(s) 423
BstNI CCWGG 3 cut(s) 296, 423, 579
BstNSI RCATGY 1 cut(s) 149
BstPI GGTNACC 1 cut(s) 569
BstSCI CCNGG 6 cut(s) 173, 269, 270, 294, 421, 577
BstSFI CTRYAG 1 cut(s) 213
BstSLI GKGCMC 1 cut(s) 145
BstV2I GAAGAC 1 cut(s) 360
BstZI CGGCCG 1 cut(s) 220
Bsu36I CCTNAGG 1 cut(s) 317
BsuI GTATCC 2 cut(s) 315, 323
BsuRI GGCC 3 cut(s) 173, 222, 420
BtsIMutI CAGTG 2 cut(s) 124, 135
Cac8I GCNNGC 3 cut(s) 29, 220, 344
CfoI GCGC 1 cut(s) 563
Cfr10I RCCGGY 2 cut(s) 218, 566
Cfr13I GGNCC 1 cut(s) 419
Cfr9I CCCGGG 1 cut(s) 270
Csp6I GTAC 2 cut(s) 278, 582
CspAI ACCGGT 1 cut(s) 566
CviAII CATG 1 cut(s) 146
CviQI GTAC 2 cut(s) 278, 582
DdeI CTNAG 2 cut(s) 317, 334
DpnI GATC 3 cut(s) 363, 411, 507
DpnII GATC 3 cut(s) 361, 409, 505
EaeI YGGCCR 1 cut(s) 220
EagI CGGCCG 1 cut(s) 220
EclXI CGGCCG 1 cut(s) 220
Eco52I CGGCCG 1 cut(s) 220
Eco81I CCTNAGG 1 cut(s) 317
Eco88I CYCGRG 1 cut(s) 270
Eco91I GGTNACC 1 cut(s) 569
EcoO65I GGTNACC 1 cut(s) 569
EcoRII CCWGG 3 cut(s) 294, 421, 577
EcoT22I ATGCAT 1 cut(s) 480
Esp3I CGTCTC 1 cut(s) 500
FaeI CATG 1 cut(s) 149
FaiI YATR 2 cut(s) 147, 443
FaqI GGGAC 1 cut(s) 183
FatI CATG 1 cut(s) 145
FblI GTMKAC 2 cut(s) 128, 306
Fnu4HI GCNGC 2 cut(s) 418, 559
Fsp4HI GCNGC 2 cut(s) 418, 559
GlaI GCGC 1 cut(s) 562
GluI GCNGC 2 cut(s) 418, 559
GsuI CTGGAG 1 cut(s) 482
HaeIII GGCC 3 cut(s) 173, 222, 420
HapII CCGG 5 cut(s) 174, 219, 233, 271, 567
HhaI GCGC 1 cut(s) 563
Hin1II CATG 1 cut(s) 149
Hin6I GCGC 1 cut(s) 561
HinP1I GCGC 1 cut(s) 561
HincII GTYRAC 2 cut(s) 129, 307
HindII GTYRAC 2 cut(s) 129, 307
HinfI GANTC 4 cut(s) 37, 209, 225, 303
HpaII CCGG 5 cut(s) 174, 219, 233, 271, 567
Hpy166II GTNNAC 3 cut(s) 129, 143, 307
Hpy188I TCNGA 4 cut(s) 110, 169, 381, 602
Hpy188III TCNNGA 3 cut(s) 233, 319, 499
Hpy8I GTNNAC 3 cut(s) 129, 143, 307
Hpy99I CGWCG 1 cut(s) 311
HpyAV CCTTC 1 cut(s) 600
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4IV ACGT 3 cut(s) 70, 80, 493
HpyCH4V TGCA 2 cut(s) 143, 478
HpyF10VI GCNNNNNNNGC 1 cut(s) 423
HpyF3I CTNAG 2 cut(s) 317, 334
HpySE526I ACGT 3 cut(s) 70, 80, 493
Hsp92II CATG 1 cut(s) 149
HspAI GCGC 1 cut(s) 561
Kpn2I TCCGGA 1 cut(s) 232
KroI GCCGGC 1 cut(s) 218
KroNI GCCGGC 1 cut(s) 220
Kzo9I GATC 3 cut(s) 361, 409, 505
LmnI GCTCC 3 cut(s) 235, 373, 551
LweI GCATC 2 cut(s) 256, 465
MaeII ACGT 3 cut(s) 70, 80, 493
MaeIII GTNAC 2 cut(s) 76, 569
MalI GATC 3 cut(s) 363, 411, 507
MboI GATC 3 cut(s) 361, 409, 505
MboII GAAGA 2 cut(s) 365, 474
MhlI GDGCHC 1 cut(s) 145
MluCI AATT 1 cut(s) 255
MlyI GAGTC 1 cut(s) 312
Mph1103I ATGCAT 1 cut(s) 480
MroI TCCGGA 1 cut(s) 232
MroNI GCCGGC 1 cut(s) 218
MspI CCGG 5 cut(s) 174, 219, 233, 271, 567
MspR9I CCNGG 6 cut(s) 175, 271, 272, 296, 423, 579
Mva1269I GAATGC 1 cut(s) 478
MvaI CCWGG 3 cut(s) 296, 423, 579
MwoI GCNNNNNNNGC 1 cut(s) 423
NaeI GCCGGC 1 cut(s) 220
NciI CCSGG 3 cut(s) 175, 271, 272
NdeII GATC 3 cut(s) 361, 409, 505
NgoMIV GCCGGC 1 cut(s) 218
NlaIII CATG 1 cut(s) 149
NlaIV GGNNCC 1 cut(s) 547
NmuCI GTSAC 1 cut(s) 76
NsiI ATGCAT 1 cut(s) 480
NspI RCATGY 1 cut(s) 149
PciI ACATGT 1 cut(s) 145
PctI GAATGC 1 cut(s) 478
PdiI GCCGGC 1 cut(s) 220
PfeI GAWTC 3 cut(s) 37, 209, 225
PinAI ACCGGT 1 cut(s) 566
PkrI GCNGC 2 cut(s) 419, 560
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
PscI ACATGT 1 cut(s) 145
Psp6I CCWGG 3 cut(s) 294, 421, 577
PspEI GGTNACC 1 cut(s) 569
PspGI CCWGG 3 cut(s) 294, 421, 577
PspN4I GGNNCC 1 cut(s) 547
PspPI GGNCC 1 cut(s) 419
RsaI GTAC 2 cut(s) 279, 583
RsaNI GTAC 2 cut(s) 278, 582
SalI GTCGAC 2 cut(s) 127, 305
SatI GCNGC 2 cut(s) 418, 559
Sau3AI GATC 3 cut(s) 361, 409, 505
Sau96I GGNCC 1 cut(s) 419
SchI GAGTC 1 cut(s) 312
ScrFI CCNGG 6 cut(s) 175, 271, 272, 296, 423, 579
SduI GDGCHC 1 cut(s) 145
SetI ASST 8 cut(s) 73, 83, 240, 249, 348, 378, 442, 496
SfaNI GCATC 2 cut(s) 256, 465
SfcI CTRYAG 1 cut(s) 213
SmaI CCCGGG 1 cut(s) 272
SmlI CTYRAG 2 cut(s) 281, 452
SmoI CTYRAG 2 cut(s) 281, 452
SrfI GCCCGGGC 1 cut(s) 272
Sse9I AATT 1 cut(s) 255
SsiI CCGC 4 cut(s) 417, 461, 531, 558
StyD4I CCNGG 6 cut(s) 173, 269, 270, 294, 421, 577
TaaI ACNGT 1 cut(s) 311
TaiI ACGT 3 cut(s) 73, 83, 496
TaqI TCGA 3 cut(s) 128, 306, 364
TasI AATT 1 cut(s) 255
TatI WGTACW 1 cut(s) 277
TauI GCSGC 2 cut(s) 420, 561
TfiI GAWTC 3 cut(s) 37, 209, 225
TscAI CASTG 2 cut(s) 124, 142
TseFI GTSAC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 474
TspMI CCCGGG 1 cut(s) 270
TspRI CASTG 2 cut(s) 124, 142
VneI GTGCAC 1 cut(s) 141
XceI RCATGY 1 cut(s) 149
XmaI CCCGGG 1 cut(s) 270
XmiI GTMKAC 2 cut(s) 128, 306
Zsp2I ATGCAT 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.