Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003506

Physical Location & Seq

Genomic Coordinates Forward (+)

10006230 .. 10006778

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G28460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAATCCCAAGAAAACCAAAGGAAAACAAAAGATTAACATCAAGAAAATTGAAAAAGATGAAGGCAGATCGGTCACATTCTCTAAGCGTCTAAATGGTATCTACACTAAAATCAGTGAGCTTTCTATTCTCTGTGGTGTTGAAGTTGCGTTTATCGGGTATTCTTGCTCTGGAAAACCATACACTTTTGGCAGTCCATCCTTCCAAGCCGTGGCGGAGCGGTTTCTCAACGGCGATGCCTCGTCGTCTTCTTCATCATCATTGGTCATGAATGCTCACAAGCAAGCGAAGATTCAAGAGCTTTGCAAAAAATACAATAGATTGGTGGAGGAGTTAAAGGTGGACGAAGTCAAAGTCAAGAAGGCAGCTGCATTGGCGGAGACGAGGGTCGTGAATAAGGATGTGTGGTGGAAAGTGGATCCAAATGACGTGAAGGATCACGAAAAGGCGAAGAAGATGATGGAGAAGTATCAAGAGCTCTATGATAAACTGTGTGAGCAAGCTGCTTCAAGGATCAAGAGAGGACATGATGAGAATAATAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

182

Amino Acids

20.64

Weight (kDa)

9.47

Isoelectric Point (pI)

36.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	16 - 63	2.4e-20	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28450 AT1G28460 AT1G29962 AT1G54760 AT3G04100
fragaria_vesca	FvH4_6g21070
malus_domestica	MD05G1287200.v1.1 MD10G1264600.v1.1 MD13G1257500.v1.1
prunus_persica	Prupe.1G087700_v2.0.a1 Prupe.4G077700_v2.0.a1 Prupe.5G243900_v2.0.a1
pyrus_communis	pycom05g26570 pycom10g22070
rosa_chinensis	RchiOBHm_Chr3g0477441 RchiOBHm_Chr3g0477451
rosa_laevigata	RLG00000023719 RLG00000023721
rosa_multiflora	Rmu_sc0005234.1_g000012 Rmu_ssc0000341.1_g000014 Rmu_ssc0000341.1_g000016
rosa_roxburghii	Rroxscaffold_6G00404150 Rroxscaffold_6G00404620 Rroxscaffold_6G00404630
rosa_rugosa	Rorug03G0160800 Rorug03G0160900
rosa_samantha	Rh3AG211100 Rh3AG211200 Rh3BG244500 Rh3BG244600 Rh3CG238300 Rh3CG238500 Rh3DG238000
rosa_wichuraiana	Rw3G019130 Rw3G019140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	211
AccBSI	CCGCTC	1 cut(s)	220
AciI	CCGC	3 cut(s)	215, 220, 377
AclWI	GGATC	4 cut(s)	413, 426, 444, 521
AfiI	CCNNNNNNNGG	1 cut(s)	211
AgsI	TTSAA	4 cut(s)	53, 143, 296, 510
AjiI	CACGTC	1 cut(s)	430
AluBI	AGCT	5 cut(s)	121, 301, 368, 478, 503
AluI	AGCT	5 cut(s)	121, 301, 368, 478, 503
Alw21I	GWGCWC	1 cut(s)	480
Alw26I	GTCTC	1 cut(s)	374
AlwI	GGATC	4 cut(s)	413, 426, 444, 521
ApeKI	GCWGC	3 cut(s)	365, 368, 503
ArsI	GACNNNNNNTTYG	2 cut(s)	339, 371
BamHI	GGATCC	1 cut(s)	418
BanII	GRGCYC	1 cut(s)	480
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	480
BbvI	GCAGC	3 cut(s)	355, 377, 490
BccI	CCATC	2 cut(s)	205, 454
BceAI	ACGGC	2 cut(s)	194, 247
BcoDI	GTCTC	1 cut(s)	374
BisI	GCNGC	3 cut(s)	366, 369, 504
BlsI	GCNGC	3 cut(s)	367, 370, 505
BmgBI	CACGTC	1 cut(s)	430
BmiI	GGNNCC	1 cut(s)	420
BmsI	GCATC	1 cut(s)	226
BoxI	GACNNNNGTC	1 cut(s)	386
BpiI	GAAGAC	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse8I	GATNNNNATC	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	2 cut(s)	197, 406
BseJI	GATNNNNATC	1 cut(s)	38
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseRI	GAGGAG	1 cut(s)	344
BseXI	GCAGC	3 cut(s)	355, 377, 490
BsiHKAI	GWGCWC	1 cut(s)	480
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	374
BsmBI	CGTCTC	1 cut(s)	374
BsmI	GAATGC	1 cut(s)	277
Bsp1286I	GDGCHC	1 cut(s)	480
Bsp143I	GATC	4 cut(s)	68, 418, 436, 513
BspACI	CCGC	3 cut(s)	215, 220, 377
BspHI	TCATGA	1 cut(s)	267
BspLI	GGNNCC	1 cut(s)	420
BspPI	GGATC	4 cut(s)	413, 426, 444, 521
BsrBI	CCGCTC	1 cut(s)	220
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	4 cut(s)	68, 418, 436, 513
Bst4CI	ACNGT	1 cut(s)	492
BstC8I	GCNNGC	2 cut(s)	285, 501
BstDEI	CTNAG	1 cut(s)	84
BstDSI	CCRYGG	1 cut(s)	210
BstF5I	GGATG	2 cut(s)	197, 406
BstKTI	GATC	4 cut(s)	71, 421, 439, 516
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	4 cut(s)	68, 418, 436, 513
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstPAI	GACNNNNGTC	1 cut(s)	386
BstV1I	GCAGC	3 cut(s)	355, 377, 490
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BtgI	CCRYGG	1 cut(s)	210
BtgZI	GCGATG	1 cut(s)	249
BtrI	CACGTC	1 cut(s)	430
BtsCI	GGATG	2 cut(s)	197, 406
BtsIMutI	CAGTG	1 cut(s)	121
Cac8I	GCNNGC	2 cut(s)	285, 501
CciI	TCATGA	1 cut(s)	267
CseI	GACGC	1 cut(s)	77
CviAII	CATG	2 cut(s)	268, 527
CviJI	RGCY	6 cut(s)	121, 209, 301, 368, 478, 503
CviKI_1	RGCY	6 cut(s)	121, 209, 301, 368, 478, 503
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	4 cut(s)	70, 420, 438, 515
DpnII	GATC	4 cut(s)	68, 418, 436, 513
EciI	GGCGGA	2 cut(s)	230, 392
Ecl136II	GAGCTC	1 cut(s)	478
Eco24I	GRGCYC	1 cut(s)	480
Eco53kI	GAGCTC	1 cut(s)	478
EcoICRI	GAGCTC	1 cut(s)	478
EcoT38I	GRGCYC	1 cut(s)	480
Esp3I	CGTCTC	1 cut(s)	374
FaeI	CATG	2 cut(s)	271, 530
FaiI	YATR	4 cut(s)	181, 269, 483, 528
FatI	CATG	2 cut(s)	267, 526
Fnu4HI	GCNGC	3 cut(s)	366, 369, 504
FokI	GGATG	2 cut(s)	184, 413
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	3 cut(s)	366, 369, 504
GluI	GCNGC	3 cut(s)	366, 369, 504
HgaI	GACGC	1 cut(s)	77
Hin1II	CATG	2 cut(s)	271, 530
HinfI	GANTC	2 cut(s)	4, 292
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188III	TCNNGA	9 cut(s)	43, 171, 268, 296, 358, 391, 440, 473, 517
Hpy8I	GTNNAC	1 cut(s)	343
Hpy99I	CGWCG	1 cut(s)	247
HpyAV	CCTTC	4 cut(s)	56, 211, 355, 427
HpyCH4III	ACNGT	1 cut(s)	492
HpyCH4IV	ACGT	1 cut(s)	429
HpyCH4V	TGCA	2 cut(s)	306, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	1 cut(s)	84
HpySE526I	ACGT	1 cut(s)	429
Hsp92II	CATG	2 cut(s)	271, 530
Kzo9I	GATC	4 cut(s)	68, 418, 436, 513
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	1 cut(s)	156
Lsp1109I	GCAGC	3 cut(s)	355, 377, 490
LweI	GCATC	1 cut(s)	226
MaeII	ACGT	1 cut(s)	429
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	4 cut(s)	70, 420, 438, 515
MbiI	CCGCTC	1 cut(s)	220
MboI	GATC	4 cut(s)	68, 418, 436, 513
MboII	GAAGA	5 cut(s)	240, 243, 301, 463, 466
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	1 cut(s)	480
MluCI	AATT	1 cut(s)	48
MnlI	CCTC	4 cut(s)	250, 322, 378, 515
MseI	TTAA	2 cut(s)	36, 335
MspA1I	CMGCKG	1 cut(s)	368
Mva1269I	GAATGC	1 cut(s)	277
MwoI	GCNNNNNNNGC	1 cut(s)	374
NdeII	GATC	4 cut(s)	68, 418, 436, 513
NlaIII	CATG	2 cut(s)	271, 530
NlaIV	GGNNCC	1 cut(s)	420
NmuCI	GTSAC	1 cut(s)	73
PagI	TCATGA	1 cut(s)	267
PctI	GAATGC	1 cut(s)	277
PfeI	GAWTC	2 cut(s)	4, 292
PflFI	GACNNNGTC	1 cut(s)	347
PflMI	CCANNNNNTGG	1 cut(s)	211
PkrI	GCNGC	3 cut(s)	367, 370, 505
PshAI	GACNNNNGTC	1 cut(s)	386
Psp124BI	GAGCTC	1 cut(s)	480
PspN4I	GGNNCC	1 cut(s)	420
PsuI	RGATCY	1 cut(s)	418
PsyI	GACNNNGTC	1 cut(s)	347
PvuII	CAGCTG	1 cut(s)	368
SacI	GAGCTC	1 cut(s)	480
SaqAI	TTAA	2 cut(s)	36, 335
SatI	GCNGC	3 cut(s)	366, 369, 504
Sau3AI	GATC	4 cut(s)	68, 418, 436, 513
SduI	GDGCHC	1 cut(s)	480
SetI	ASST	7 cut(s)	123, 303, 342, 370, 432, 480, 505
SfaNI	GCATC	1 cut(s)	226
Sse9I	AATT	1 cut(s)	48
SsiI	CCGC	3 cut(s)	215, 220, 377
SstI	GAGCTC	1 cut(s)	480
TaaI	ACNGT	1 cut(s)	492
TaiI	ACGT	1 cut(s)	432
TaqII	GACCGA	1 cut(s)	61
TasI	AATT	1 cut(s)	48
TfiI	GAWTC	2 cut(s)	4, 292
Tru1I	TTAA	2 cut(s)	36, 335
Tru9I	TTAA	2 cut(s)	36, 335
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	3 cut(s)	365, 368, 503
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	4 cut(s)	17, 75, 243, 284
TspRI	CASTG	1 cut(s)	121
Tth111I	GACNNNGTC	1 cut(s)	347
Van91I	CCANNNNNTGG	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.