Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005234.1

Orthogroup ID

OG0003506

Physical Location & Seq

Genomic Coordinates Reverse (-)

47350 .. 47961

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005234.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atggaaggaggcaagaaaacaaaaggcaggcaaaagattccaataaaaaagattgagaacgttaacgaacgtcaagtgacgttttctaaaagaaaatctggcgttataaaaaaagccagtgaaatgtcgaccctcactggtgcacatgtttgtttagtgatattctccgaggccgggaaaccctactctttcggcagtccctctattgaatctgtagccggccgattcttgccggagctacaaaaccaaaaccaaattagtgatgatgcccgggctgtacttgaggctaatcgccaggcaagagtcgacggtatcctcaggatacacaacgacttagaaagcaagctgaaagaagacagagatcgagcaaaggagcttcggaaaagagaaagggaaagaacaagcaaagatcagggcggcctttgctggtgggagaaacctatggaggggcttgagttggcggaactcaaacagatgcattcttcatttgaacgtctccagaattatctagcctcctatctcaaaagcaccgcctctgctggtggctcctcatctggcggcgcaaccggtatccctcctggtacattgcctgcacgcttcggattggagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04011 ko04111 map04011 map04111

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

203

Amino Acids

22.49

Weight (kDa)

9.61

Isoelectric Point (pI)

42.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28450 AT1G28460 AT1G29962 AT1G54760 AT3G04100
fragaria_vesca	FvH4_6g21070
malus_domestica	MD05G1287200.v1.1 MD10G1264600.v1.1 MD13G1257500.v1.1
prunus_persica	Prupe.1G087700_v2.0.a1 Prupe.4G077700_v2.0.a1 Prupe.5G243900_v2.0.a1
pyrus_communis	pycom05g26570 pycom10g22070
rosa_chinensis	RchiOBHm_Chr3g0477441 RchiOBHm_Chr3g0477451
rosa_laevigata	RLG00000023719 RLG00000023721
rosa_multiflora	Rmu_sc0005234.1_g000012 Rmu_ssc0000341.1_g000014 Rmu_ssc0000341.1_g000016
rosa_roxburghii	Rroxscaffold_6G00404150 Rroxscaffold_6G00404620 Rroxscaffold_6G00404630
rosa_rugosa	Rorug03G0160800 Rorug03G0160900
rosa_samantha	Rh3AG211100 Rh3AG211200 Rh3BG244500 Rh3BG244600 Rh3CG238300 Rh3CG238500 Rh3DG238000
rosa_wichuraiana	Rw3G019130 Rw3G019140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	107
AccI	GTMKAC	2 cut(s)	128, 306
AciI	CCGC	4 cut(s)	417, 461, 531, 558
AclI	AACGTT	1 cut(s)	60
AcoI	YGGCCR	1 cut(s)	220
AfaI	GTAC	2 cut(s)	279, 583
AfiI	CCNNNNNNNGG	2 cut(s)	174, 446
AflIII	ACRYGT	1 cut(s)	145
AgeI	ACCGGT	1 cut(s)	566
AgsI	TTSAA	2 cut(s)	209, 491
AjnI	CCWGG	2 cut(s)	294, 577
AluBI	AGCT	3 cut(s)	238, 346, 376
AluI	AGCT	3 cut(s)	238, 346, 376
Alw21I	GWGCWC	1 cut(s)	145
Alw26I	GTCTC	1 cut(s)	500
Alw44I	GTGCAC	1 cut(s)	141
Ama87I	CYCGRG	1 cut(s)	270
AoxI	GGCC	3 cut(s)	171, 220, 418
ApaLI	GTGCAC	1 cut(s)	141
AsiGI	ACCGGT	1 cut(s)	566
AspLEI	GCGC	1 cut(s)	563
AsuC2I	CCSGG	3 cut(s)	175, 271, 272
AvaI	CYCGRG	1 cut(s)	270
AxyI	CCTNAGG	1 cut(s)	317
BaeGI	GKGCMC	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	145
BciT130I	CCWGG	2 cut(s)	296, 579
BciVI	GTATCC	3 cut(s)	315, 323, 581
BcnI	CCSGG	3 cut(s)	175, 271, 272
BcoDI	GTCTC	1 cut(s)	500
BfaI	CTAG	1 cut(s)	509
BfmI	CTRYAG	1 cut(s)	213
BfuI	GTATCC	3 cut(s)	315, 323, 581
BisI	GCNGC	2 cut(s)	418, 559
BlsI	GCNGC	2 cut(s)	419, 560
Bme1390I	CCNGG	5 cut(s)	175, 271, 272, 296, 579
BmeT110I	CYCGRG	1 cut(s)	270
BmiI	GGNNCC	1 cut(s)	547
BmrFI	CCNGG	5 cut(s)	175, 271, 272, 296, 579
BmsI	GCATC	2 cut(s)	256, 465
BpiI	GAAGAC	1 cut(s)	360
BpmI	CTGGAG	1 cut(s)	482
BpuEI	CTTGAG	2 cut(s)	302, 473
BpuMI	CCSGG	3 cut(s)	175, 271, 272
BsaJI	CCNNGG	2 cut(s)	168, 270
BsaWI	WCCGGW	1 cut(s)	566
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 446
Bse118I	RCCGGY	2 cut(s)	218, 566
Bse1I	ACTGG	2 cut(s)	117, 142
Bse21I	CCTNAGG	1 cut(s)	317
Bse3DI	GCAATG	1 cut(s)	584
BseBI	CCWGG	2 cut(s)	296, 579
BseDI	CCNNGG	2 cut(s)	168, 270
BseLI	CCNNNNNNNGG	2 cut(s)	174, 446
BseMI	GCAATG	1 cut(s)	584
BseMII	CTCAG	1 cut(s)	331
BseNI	ACTGG	2 cut(s)	117, 142
BseRI	GAGGAG	1 cut(s)	538
BseSI	GKGCMC	1 cut(s)	145
BseX3I	CGGCCG	1 cut(s)	220
BsgI	GTGCAG	1 cut(s)	576
Bsh1285I	CGRYCG	1 cut(s)	223
BshFI	GGCC	3 cut(s)	173, 222, 420
BshTI	ACCGGT	1 cut(s)	566
BsiEI	CGRYCG	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	145
BsiHKCI	CYCGRG	1 cut(s)	270
BsiSI	CCGG	5 cut(s)	174, 219, 233, 271, 567
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	2 cut(s)	174, 446
BsmAI	GTCTC	1 cut(s)	500
BsmBI	CGTCTC	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	183
BsmI	GAATGC	1 cut(s)	478
BsnI	GGCC	3 cut(s)	173, 222, 420
BsoBI	CYCGRG	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	2 cut(s)	361, 409
BspACI	CCGC	4 cut(s)	417, 461, 531, 558
BspANI	GGCC	3 cut(s)	173, 222, 420
BspCNI	CTCAG	1 cut(s)	330
BspLI	GGNNCC	1 cut(s)	547
BsrDI	GCAATG	1 cut(s)	584
BsrFI	RCCGGY	2 cut(s)	218, 566
BsrI	ACTGG	2 cut(s)	117, 142
BssAI	RCCGGY	2 cut(s)	218, 566
BssECI	CCNNGG	2 cut(s)	168, 270
BssMI	GATC	2 cut(s)	361, 409
Bst2UI	CCWGG	2 cut(s)	296, 579
Bst4CI	ACNGT	1 cut(s)	311
BstC8I	GCNNGC	5 cut(s)	29, 220, 344, 591, 595
BstDEI	CTNAG	2 cut(s)	317, 334
BstHHI	GCGC	1 cut(s)	563
BstKTI	GATC	2 cut(s)	364, 412
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	2 cut(s)	361, 409
BstMCI	CGRYCG	1 cut(s)	223
BstMWI	GCNNNNNNNGC	1 cut(s)	423
BstNI	CCWGG	2 cut(s)	296, 579
BstNSI	RCATGY	1 cut(s)	149
BstSCI	CCNGG	5 cut(s)	173, 269, 270, 294, 577
BstSFI	CTRYAG	1 cut(s)	213
BstSLI	GKGCMC	1 cut(s)	145
BstV2I	GAAGAC	1 cut(s)	360
BstZI	CGGCCG	1 cut(s)	220
Bsu36I	CCTNAGG	1 cut(s)	317
BsuI	GTATCC	3 cut(s)	315, 323, 581
BsuRI	GGCC	3 cut(s)	173, 222, 420
BtsIMutI	CAGTG	2 cut(s)	124, 135
Cac8I	GCNNGC	5 cut(s)	29, 220, 344, 591, 595
CfoI	GCGC	1 cut(s)	563
Cfr10I	RCCGGY	2 cut(s)	218, 566
Cfr9I	CCCGGG	1 cut(s)	270
Csp6I	GTAC	2 cut(s)	278, 582
CspAI	ACCGGT	1 cut(s)	566
CviAII	CATG	1 cut(s)	146
CviQI	GTAC	2 cut(s)	278, 582
DdeI	CTNAG	2 cut(s)	317, 334
DpnI	GATC	2 cut(s)	363, 411
DpnII	GATC	2 cut(s)	361, 409
EaeI	YGGCCR	1 cut(s)	220
EagI	CGGCCG	1 cut(s)	220
EciI	GGCGGA	1 cut(s)	476
EclXI	CGGCCG	1 cut(s)	220
Eco52I	CGGCCG	1 cut(s)	220
Eco81I	CCTNAGG	1 cut(s)	317
Eco88I	CYCGRG	1 cut(s)	270
EcoRII	CCWGG	2 cut(s)	294, 577
EcoT22I	ATGCAT	1 cut(s)	480
Esp3I	CGTCTC	1 cut(s)	500
FaeI	CATG	1 cut(s)	149
FaiI	YATR	3 cut(s)	107, 147, 443
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	1 cut(s)	145
FblI	GTMKAC	2 cut(s)	128, 306
Fnu4HI	GCNGC	2 cut(s)	418, 559
Fsp4HI	GCNGC	2 cut(s)	418, 559
FspBI	CTAG	1 cut(s)	509
GlaI	GCGC	1 cut(s)	562
GluI	GCNGC	2 cut(s)	418, 559
GsuI	CTGGAG	1 cut(s)	482
HaeIII	GGCC	3 cut(s)	173, 222, 420
HapII	CCGG	5 cut(s)	174, 219, 233, 271, 567
HhaI	GCGC	1 cut(s)	563
Hin1II	CATG	1 cut(s)	149
Hin6I	GCGC	1 cut(s)	561
HinP1I	GCGC	1 cut(s)	561
HincII	GTYRAC	3 cut(s)	64, 129, 307
HindII	GTYRAC	3 cut(s)	64, 129, 307
HinfI	GANTC	4 cut(s)	37, 209, 225, 303
HpaI	GTTAAC	1 cut(s)	64
HpaII	CCGG	5 cut(s)	174, 219, 233, 271, 567
Hpy166II	GTNNAC	4 cut(s)	64, 129, 143, 307
Hpy188I	TCNGA	3 cut(s)	169, 381, 602
Hpy188III	TCNNGA	2 cut(s)	319, 499
Hpy8I	GTNNAC	4 cut(s)	64, 129, 143, 307
Hpy99I	CGWCG	1 cut(s)	311
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4IV	ACGT	4 cut(s)	60, 70, 80, 493
HpyCH4V	TGCA	3 cut(s)	143, 478, 593
HpyF10VI	GCNNNNNNNGC	1 cut(s)	423
HpyF3I	CTNAG	2 cut(s)	317, 334
HpySE526I	ACGT	4 cut(s)	60, 70, 80, 493
Hsp92II	CATG	1 cut(s)	149
HspAI	GCGC	1 cut(s)	561
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
KspAI	GTTAAC	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	361, 409
LmnI	GCTCC	3 cut(s)	235, 373, 551
LweI	GCATC	2 cut(s)	256, 465
MaeI	CTAG	1 cut(s)	509
MaeII	ACGT	4 cut(s)	60, 70, 80, 493
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	2 cut(s)	363, 411
MboI	GATC	2 cut(s)	361, 409
MboII	GAAGA	2 cut(s)	365, 474
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	2 cut(s)	255, 502
MlyI	GAGTC	1 cut(s)	312
Mph1103I	ATGCAT	1 cut(s)	480
MroNI	GCCGGC	1 cut(s)	218
MseI	TTAA	1 cut(s)	63
MspI	CCGG	5 cut(s)	174, 219, 233, 271, 567
MspR9I	CCNGG	5 cut(s)	175, 271, 272, 296, 579
Mva1269I	GAATGC	1 cut(s)	478
MvaI	CCWGG	2 cut(s)	296, 579
MwoI	GCNNNNNNNGC	1 cut(s)	423
NaeI	GCCGGC	1 cut(s)	220
NciI	CCSGG	3 cut(s)	175, 271, 272
NdeII	GATC	2 cut(s)	361, 409
NgoMIV	GCCGGC	1 cut(s)	218
NlaIII	CATG	1 cut(s)	149
NlaIV	GGNNCC	1 cut(s)	547
NmuCI	GTSAC	1 cut(s)	76
NsiI	ATGCAT	1 cut(s)	480
NspI	RCATGY	1 cut(s)	149
PciI	ACATGT	1 cut(s)	145
PctI	GAATGC	1 cut(s)	478
PdiI	GCCGGC	1 cut(s)	220
PfeI	GAWTC	3 cut(s)	37, 209, 225
PinAI	ACCGGT	1 cut(s)	566
PkrI	GCNGC	2 cut(s)	419, 560
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
PscI	ACATGT	1 cut(s)	145
PsiI	TTATAA	1 cut(s)	107
Psp1406I	AACGTT	1 cut(s)	60
Psp6I	CCWGG	2 cut(s)	294, 577
PspGI	CCWGG	2 cut(s)	294, 577
PspN4I	GGNNCC	1 cut(s)	547
RsaI	GTAC	2 cut(s)	279, 583
RsaNI	GTAC	2 cut(s)	278, 582
SalI	GTCGAC	2 cut(s)	127, 305
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	2 cut(s)	418, 559
Sau3AI	GATC	2 cut(s)	361, 409
SchI	GAGTC	1 cut(s)	312
ScrFI	CCNGG	5 cut(s)	175, 271, 272, 296, 579
SduI	GDGCHC	1 cut(s)	145
SetI	ASST	8 cut(s)	63, 73, 83, 240, 348, 378, 442, 496
SfaNI	GCATC	2 cut(s)	256, 465
SfcI	CTRYAG	1 cut(s)	213
SmaI	CCCGGG	1 cut(s)	272
SmlI	CTYRAG	2 cut(s)	281, 452
SmoI	CTYRAG	2 cut(s)	281, 452
SrfI	GCCCGGGC	1 cut(s)	272
Sse9I	AATT	2 cut(s)	255, 502
SsiI	CCGC	4 cut(s)	417, 461, 531, 558
SspMI	CTAG	1 cut(s)	509
StyD4I	CCNGG	5 cut(s)	173, 269, 270, 294, 577
TaaI	ACNGT	1 cut(s)	311
TaiI	ACGT	4 cut(s)	63, 73, 83, 496
TaqI	TCGA	3 cut(s)	128, 306, 364
TasI	AATT	2 cut(s)	255, 502
TatI	WGTACW	1 cut(s)	277
TauI	GCSGC	2 cut(s)	420, 561
TfiI	GAWTC	3 cut(s)	37, 209, 225
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	2 cut(s)	124, 142
TseFI	GTSAC	1 cut(s)	76
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	1 cut(s)	474
TspMI	CCCGGG	1 cut(s)	270
TspRI	CASTG	2 cut(s)	124, 142
VneI	GTGCAC	1 cut(s)	141
XceI	RCATGY	1 cut(s)	149
XmaI	CCCGGG	1 cut(s)	270
XmiI	GTMKAC	2 cut(s)	128, 306
XspI	CTAG	1 cut(s)	509
Zsp2I	ATGCAT	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.