Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003506

Physical Location & Seq

Genomic Coordinates Forward (+)

20433912 .. 20434397

Gene Structure 486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G54760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAAGACAGATTGGTCACATTATCTAAGCGTCGAAATGGAATCTACAATAAGCAATGAGCTTTCCATTCTCTGTGGTGCTGAAGTTGCGTTTCTCGGATACTCTTGCTCAGGAAAACCATACACATTCGGCAGTCCGTCTTTTCAAGCCGTGGCAGAGCGATTTCTCAATCGTGAGGCCTCATCATCGTTGCAACGATCGGTCATGAATGCTCACCAACAAGCGAAGATTCAAGAGCTTTGCAAAGTATACAATAGAATGGTGGAGGAGGCAAAGACGGAAGAAGCCAAAGTAAAGAAGGCAGCTGCATTAGCGGAGACAATGCCCGTAGATGAGGATGCGTGGTGGAAAGTGGATCCAAAGGAGGTGGAAGATCACGAAGAGGCGAAGAAGATAATGGAAAAGTGTGAAGGGCTCTATGAGAAACTGTGTAATGAAGCTGCTGCAAGGATCCAAAGAGGAGATGCTGAGAATAATAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

161

Amino Acids

18.18

Weight (kDa)

5.12

Isoelectric Point (pI)

36.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	19 - 43	8.1e-08	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28450 AT1G28460 AT1G29962 AT1G54760 AT3G04100
fragaria_vesca	FvH4_6g21070
malus_domestica	MD05G1287200.v1.1 MD10G1264600.v1.1 MD13G1257500.v1.1
prunus_persica	Prupe.1G087700_v2.0.a1 Prupe.4G077700_v2.0.a1 Prupe.5G243900_v2.0.a1
pyrus_communis	pycom05g26570 pycom10g22070
rosa_chinensis	RchiOBHm_Chr3g0477441 RchiOBHm_Chr3g0477451
rosa_laevigata	RLG00000023719 RLG00000023721
rosa_multiflora	Rmu_sc0005234.1_g000012 Rmu_ssc0000341.1_g000014 Rmu_ssc0000341.1_g000016
rosa_roxburghii	Rroxscaffold_6G00404150 Rroxscaffold_6G00404620 Rroxscaffold_6G00404630
rosa_rugosa	Rorug03G0160800 Rorug03G0160900
rosa_samantha	Rh3AG211100 Rh3AG211200 Rh3BG244500 Rh3BG244600 Rh3CG238300 Rh3CG238500 Rh3DG238000
rosa_wichuraiana	Rw3G019130 Rw3G019140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	13
AccI	GTMKAC	1 cut(s)	249
AciI	CCGC	1 cut(s)	314
AclWI	GGATC	4 cut(s)	350, 363, 445, 458
AcuI	CTGAAG	1 cut(s)	102
AgsI	TTSAA	2 cut(s)	146, 233
AluBI	AGCT	4 cut(s)	61, 238, 305, 440
AluI	AGCT	4 cut(s)	61, 238, 305, 440
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	4 cut(s)	350, 363, 445, 458
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	4 cut(s)	302, 305, 440, 443
AsuHPI	GGTGA	1 cut(s)	206
BamHI	GGATCC	2 cut(s)	355, 450
BanII	GRGCYC	1 cut(s)	417
BbsI	GAAGAC	1 cut(s)	11
BbvI	GCAGC	4 cut(s)	292, 314, 427, 430
BceAI	ACGGC	1 cut(s)	134
BciVI	GTATCC	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	311
BfuI	GTATCC	1 cut(s)	92
BisI	GCNGC	4 cut(s)	303, 306, 441, 444
BlsI	GCNGC	4 cut(s)	304, 307, 442, 445
BmiI	GGNNCC	2 cut(s)	357, 452
BmsI	GCATC	2 cut(s)	328, 454
BpiI	GAAGAC	1 cut(s)	11
Bpu10I	CCTNAGC	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	61
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	1 cut(s)	343
BseMI	GCAATG	1 cut(s)	61
BseMII	CTCAG	2 cut(s)	123, 459
BseRI	GAGGAG	2 cut(s)	281, 474
BseXI	GCAGC	4 cut(s)	292, 314, 427, 430
Bsh1285I	CGRYCG	1 cut(s)	200
BshFI	GGCC	1 cut(s)	179
BsiEI	CGRYCG	1 cut(s)	200
BsmAI	GTCTC	1 cut(s)	311
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	417
Bsp143I	GATC	4 cut(s)	197, 355, 373, 450
BspACI	CCGC	1 cut(s)	314
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	2 cut(s)	122, 460
BspHI	TCATGA	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	357, 452
BspPI	GGATC	4 cut(s)	350, 363, 445, 458
BsrDI	GCAATG	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	4 cut(s)	197, 355, 373, 450
BssNAI	GTATAC	1 cut(s)	250
Bst1107I	GTATAC	1 cut(s)	250
Bst4CI	ACNGT	1 cut(s)	429
Bst6I	CTCTTC	1 cut(s)	375
BstDEI	CTNAG	3 cut(s)	26, 109, 468
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	343
BstKTI	GATC	4 cut(s)	200, 358, 376, 453
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	4 cut(s)	197, 355, 373, 450
BstMCI	CGRYCG	1 cut(s)	200
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 311
BstV1I	GCAGC	4 cut(s)	292, 314, 427, 430
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	2 cut(s)	355, 450
BstYI	RGATCY	2 cut(s)	355, 450
BstZ17I	GTATAC	1 cut(s)	250
BsuI	GTATCC	1 cut(s)	92
BsuRI	GGCC	1 cut(s)	179
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	343
CciI	TCATGA	1 cut(s)	204
CseI	GACGC	1 cut(s)	19
CspCI	CAANNNNNGTGG	2 cut(s)	348, 383
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	8 cut(s)	61, 149, 179, 238, 287, 305, 415, 440
CviKI_1	RGCY	8 cut(s)	61, 149, 179, 238, 287, 305, 415, 440
DdeI	CTNAG	3 cut(s)	26, 109, 468
DpnI	GATC	4 cut(s)	199, 357, 375, 452
DpnII	GATC	4 cut(s)	197, 355, 373, 450
DrdI	GACNNNNNNGTC	1 cut(s)	13
DseDI	GACNNNNNNGTC	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco147I	AGGCCT	1 cut(s)	179
Eco24I	GRGCYC	1 cut(s)	417
Eco57I	CTGAAG	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	417
FaeI	CATG	1 cut(s)	208
FaiI	YATR	4 cut(s)	121, 206, 250, 420
FatI	CATG	1 cut(s)	204
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	4 cut(s)	303, 306, 441, 444
FokI	GGATG	1 cut(s)	350
FriOI	GRGCYC	1 cut(s)	417
Fsp4HI	GCNGC	4 cut(s)	303, 306, 441, 444
GluI	GCNGC	4 cut(s)	303, 306, 441, 444
HaeIII	GGCC	1 cut(s)	179
HgaI	GACGC	1 cut(s)	19
Hin1II	CATG	1 cut(s)	208
HinfI	GANTC	2 cut(s)	41, 229
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	1 cut(s)	98
Hpy188III	TCNNGA	5 cut(s)	111, 173, 205, 233, 377
Hpy8I	GTNNAC	1 cut(s)	250
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	2 cut(s)	292, 404
HpyCH4III	ACNGT	1 cut(s)	429
HpyCH4V	TGCA	4 cut(s)	193, 243, 308, 446
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 311
HpyF3I	CTNAG	3 cut(s)	26, 109, 468
Hsp92II	CATG	1 cut(s)	208
Kzo9I	GATC	4 cut(s)	197, 355, 373, 450
LpnPI	CCDG	1 cut(s)	96
Lsp1109I	GCAGC	4 cut(s)	292, 314, 427, 430
LweI	GCATC	2 cut(s)	328, 454
MaeIII	GTNAC	1 cut(s)	15
MalI	GATC	4 cut(s)	199, 357, 375, 452
MboI	GATC	4 cut(s)	197, 355, 373, 450
MboII	GAAGA	7 cut(s)	16, 238, 293, 383, 392, 400, 403
MflI	RGATCY	2 cut(s)	355, 450
MhlI	GDGCHC	1 cut(s)	417
MnlI	CCTC	8 cut(s)	169, 190, 259, 262, 328, 358, 376, 452
MspA1I	CMGCKG	1 cut(s)	305
Mva1269I	GAATGC	1 cut(s)	214
MwoI	GCNNNNNNNGC	2 cut(s)	86, 311
NdeII	GATC	4 cut(s)	197, 355, 373, 450
NlaIII	CATG	1 cut(s)	208
NlaIV	GGNNCC	2 cut(s)	357, 452
NmuCI	GTSAC	1 cut(s)	15
PagI	TCATGA	1 cut(s)	204
PceI	AGGCCT	1 cut(s)	179
PctI	GAATGC	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	41, 229
PkrI	GCNGC	4 cut(s)	304, 307, 442, 445
Ple19I	CGATCG	1 cut(s)	200
PspN4I	GGNNCC	2 cut(s)	357, 452
PsuI	RGATCY	2 cut(s)	355, 450
PvuI	CGATCG	1 cut(s)	200
PvuII	CAGCTG	1 cut(s)	305
SatI	GCNGC	4 cut(s)	303, 306, 441, 444
Sau3AI	GATC	4 cut(s)	197, 355, 373, 450
SduI	GDGCHC	1 cut(s)	417
SetI	ASST	5 cut(s)	63, 240, 307, 369, 442
SfaNI	GCATC	2 cut(s)	328, 454
SseBI	AGGCCT	1 cut(s)	179
SsiI	CCGC	1 cut(s)	314
StuI	AGGCCT	1 cut(s)	179
TaaI	ACNGT	1 cut(s)	429
TaqI	TCGA	1 cut(s)	33
TaqII	GACCGA	1 cut(s)	190
TfiI	GAWTC	2 cut(s)	41, 229
TseFI	GTSAC	1 cut(s)	15
TseI	GCWGC	4 cut(s)	302, 305, 440, 443
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	3 cut(s)	17, 221, 450
TspGWI	ACGGA	2 cut(s)	126, 293
XmiI	GTMKAC	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.