Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0003506

Physical Location & Seq

Genomic Coordinates Forward (+)

30226589 .. 30226888

Gene Structure 300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1257500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGAAGCCAAGAAGACCAGAGGCAGGCAAAAGACTGAGATGAAGAGGATAGAAAAGGAAGATGATCGTCTAGTTGTCTTTTCAAAACGCCGATCAGGAATATACAAGAAGGCTACTGAGTTAGGGGCGTTATGCGGTGCACAAGTAGGCATTCTAGTGTTTTCGCCAATGGGAAAACCTCATTCCTTCGGTAATCCCTCTATTGATTATGTATTGAACCGGTTTTTACATAACCAGCAGGAACCTATTCTGGAGGCCTACCGGCAGGAAAAAAATCCTCCAGGCCATAGAGAACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04011 ko04111 map04011 map04111

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

100

Amino Acids

11.4

Weight (kDa)

9.81

Isoelectric Point (pI)

50.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	16 - 63	6.3e-21	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28450 AT1G28460 AT1G29962 AT1G54760 AT3G04100
fragaria_vesca	FvH4_6g21070
malus_domestica	MD05G1287200.v1.1 MD10G1264600.v1.1 MD13G1257500.v1.1
prunus_persica	Prupe.1G087700_v2.0.a1 Prupe.4G077700_v2.0.a1 Prupe.5G243900_v2.0.a1
pyrus_communis	pycom05g26570 pycom10g22070
rosa_chinensis	RchiOBHm_Chr3g0477441 RchiOBHm_Chr3g0477451
rosa_laevigata	RLG00000023719 RLG00000023721
rosa_multiflora	Rmu_sc0005234.1_g000012 Rmu_ssc0000341.1_g000014 Rmu_ssc0000341.1_g000016
rosa_roxburghii	Rroxscaffold_6G00404150 Rroxscaffold_6G00404620 Rroxscaffold_6G00404630
rosa_rugosa	Rorug03G0160800 Rorug03G0160900
rosa_samantha	Rh3AG211100 Rh3AG211200 Rh3BG244500 Rh3BG244600 Rh3CG238300 Rh3CG238500 Rh3DG238000
rosa_wichuraiana	Rw3G019130 Rw3G019140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	24
AgeI	ACCGGT	1 cut(s)	219
AgsI	TTSAA	2 cut(s)	84, 217
AjnI	CCWGG	1 cut(s)	280
Alw21I	GWGCWC	1 cut(s)	142
Alw44I	GTGCAC	1 cut(s)	138
AoxI	GGCC	2 cut(s)	255, 283
ApaLI	GTGCAC	1 cut(s)	138
AsiGI	ACCGGT	1 cut(s)	219
Asp700I	GAANNNNTTC	1 cut(s)	246
BaeGI	GKGCMC	1 cut(s)	142
BbsI	GAAGAC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	142
BciT130I	CCWGG	1 cut(s)	282
BfaI	CTAG	2 cut(s)	71, 155
Bme1390I	CCNGG	1 cut(s)	282
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	1 cut(s)	282
BpiI	GAAGAC	1 cut(s)	20
BpmI	CTGGAG	2 cut(s)	264, 272
BsaWI	WCCGGW	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse118I	RCCGGY	2 cut(s)	219, 261
BseBI	CCWGG	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMII	CTCAG	2 cut(s)	27, 108
BseSI	GKGCMC	1 cut(s)	142
BshFI	GGCC	2 cut(s)	257, 285
BshTI	ACCGGT	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	142
BsiSI	CCGG	2 cut(s)	220, 262
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmI	GAATGC	1 cut(s)	150
BsnI	GGCC	2 cut(s)	257, 285
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	2 cut(s)	64, 92
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	2 cut(s)	257, 285
BspCNI	CTCAG	2 cut(s)	28, 109
BspLI	GGNNCC	1 cut(s)	243
BsrFI	RCCGGY	2 cut(s)	219, 261
BssAI	RCCGGY	2 cut(s)	219, 261
BssMI	GATC	2 cut(s)	64, 92
Bst2UI	CCWGG	1 cut(s)	282
Bst6I	CTCTTC	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	2 cut(s)	36, 117
BstKTI	GATC	2 cut(s)	67, 95
BstMBI	GATC	2 cut(s)	64, 92
BstNI	CCWGG	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	280
BstSLI	GKGCMC	1 cut(s)	142
BstV2I	GAAGAC	1 cut(s)	20
BsuRI	GGCC	2 cut(s)	257, 285
Cac8I	GCNNGC	1 cut(s)	26
Cfr10I	RCCGGY	2 cut(s)	219, 261
CspAI	ACCGGT	1 cut(s)	219
CviJI	RGCY	4 cut(s)	8, 113, 257, 285
CviKI_1	RGCY	4 cut(s)	8, 113, 257, 285
DdeI	CTNAG	2 cut(s)	36, 117
DpnI	GATC	2 cut(s)	66, 94
DpnII	GATC	2 cut(s)	64, 92
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco147I	AGGCCT	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	280
FaiI	YATR	6 cut(s)	103, 133, 210, 231, 288, 298
FspBI	CTAG	2 cut(s)	71, 155
GsuI	CTGGAG	2 cut(s)	264, 272
HaeIII	GGCC	2 cut(s)	257, 285
HapII	CCGG	2 cut(s)	220, 262
HpaII	CCGG	2 cut(s)	220, 262
Hpy166II	GTNNAC	1 cut(s)	140
Hpy188III	TCNNGA	2 cut(s)	96, 251
Hpy8I	GTNNAC	1 cut(s)	140
HpyAV	CCTTC	2 cut(s)	103, 196
HpyCH4V	TGCA	1 cut(s)	140
HpyF3I	CTNAG	2 cut(s)	36, 117
Kzo9I	GATC	2 cut(s)	64, 92
MaeI	CTAG	2 cut(s)	71, 155
MalI	GATC	2 cut(s)	66, 94
MboI	GATC	2 cut(s)	64, 92
MboII	GAAGA	3 cut(s)	25, 55, 71
MhlI	GDGCHC	1 cut(s)	142
MnlI	CCTC	6 cut(s)	14, 39, 189, 208, 247, 288
MroXI	GAANNNNTTC	1 cut(s)	246
MslI	CAYNNNNRTG	1 cut(s)	155
MspI	CCGG	2 cut(s)	220, 262
MspR9I	CCNGG	1 cut(s)	282
Mva1269I	GAATGC	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	282
NdeII	GATC	2 cut(s)	64, 92
NlaIV	GGNNCC	1 cut(s)	243
PceI	AGGCCT	1 cut(s)	257
PctI	GAATGC	1 cut(s)	150
PdmI	GAANNNNTTC	1 cut(s)	246
PinAI	ACCGGT	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	1 cut(s)	243
RseI	CAYNNNNRTG	1 cut(s)	155
Sau3AI	GATC	2 cut(s)	64, 92
ScrFI	CCNGG	1 cut(s)	282
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	2 cut(s)	181, 247
SmiMI	CAYNNNNRTG	1 cut(s)	155
SseBI	AGGCCT	1 cut(s)	257
SsiI	CCGC	1 cut(s)	135
SspMI	CTAG	2 cut(s)	71, 155
StuI	AGGCCT	1 cut(s)	257
StyD4I	CCNGG	1 cut(s)	280
TspDTI	ATGAA	1 cut(s)	56
VneI	GTGCAC	1 cut(s)	138
XmnI	GAANNNNTTC	1 cut(s)	246
XspI	CTAG	2 cut(s)	71, 155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.