Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003506

Physical Location & Seq

Genomic Coordinates Reverse (-)

24554733 .. 24555368

Gene Structure 636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g22070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGAGGGCAAGCAAACAAGAGGAAGGCAAAAGATTGAGATGAAGAAGATCGAAAATGAAGAGGTTCTTCTCGTTTCTTTCTCGAAACGAAGGTCCGGCGTTTACAAGAAAGCTACCGATATGATAGCACTATCTGGCGGTGAGGTGGGTATTGTGATCTTCTCACCTTCTGGTAAGCCTTTCTCATATGGCCATCCATCTGTCGACTATGTCATCAATCGGTTTATGAACCAAAATCCACCCGAAAACGACGACTACACTCATCAATTCATGGAAGCTCATCGACAGATGAAAATTTCCGAGGCCATGGAACAATACAACGAGCTTCTTGACCCGTTAGAAGCTGTGAAGGAGCGACAGAAGTCGCTCCTAAGGAAAAACAGGACAAGGAGAAATCAAGAGCACCTGTGGTGGAGTGTACCTATTGAAGAGCTTAGGGTGGATGAGCTAAAACAAATCCATGAATCCATGGCGGAGCTGCACATGACTATCTCCAAACATCTTAAGGAGAGGAGTAGTAGTTCTAATATTTTTGGTGCCTCCTCTTCTGGATCTGTCCAACAAACCAATCCCAACTTTGATGCTGATCCAAGTGGAACTGGTTCTTATGCTTTTCCTTATGGCTACGGCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04011 ko04111 map04011 map04111

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

212

Amino Acids

24.2

Weight (kDa)

7.12

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	16 - 63	1.1e-14	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28450 AT1G28460 AT1G29962 AT1G54760 AT3G04100
fragaria_vesca	FvH4_6g21070
malus_domestica	MD05G1287200.v1.1 MD10G1264600.v1.1 MD13G1257500.v1.1
prunus_persica	Prupe.1G087700_v2.0.a1 Prupe.4G077700_v2.0.a1 Prupe.5G243900_v2.0.a1
pyrus_communis	pycom05g26570 pycom10g22070
rosa_chinensis	RchiOBHm_Chr3g0477441 RchiOBHm_Chr3g0477451
rosa_laevigata	RLG00000023719 RLG00000023721
rosa_multiflora	Rmu_sc0005234.1_g000012 Rmu_ssc0000341.1_g000014 Rmu_ssc0000341.1_g000016
rosa_roxburghii	Rroxscaffold_6G00404150 Rroxscaffold_6G00404620 Rroxscaffold_6G00404630
rosa_rugosa	Rorug03G0160800 Rorug03G0160900
rosa_samantha	Rh3AG211100 Rh3AG211200 Rh3BG244500 Rh3BG244600 Rh3CG238300 Rh3CG238500 Rh3DG238000
rosa_wichuraiana	Rw3G019130 Rw3G019140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	536
AccI	GTMKAC	1 cut(s)	204
AciI	CCGC	2 cut(s)	138, 473
AclWI	GGATC	2 cut(s)	559, 581
AcoI	YGGCCR	2 cut(s)	190, 628
AcsI	RAATTY	1 cut(s)	294
AfaI	GTAC	1 cut(s)	420
AflII	CTTAAG	1 cut(s)	503
AgsI	TTSAA	1 cut(s)	428
AloI	GAACNNNNNNTCC	2 cut(s)	505, 537
AluBI	AGCT	7 cut(s)	113, 278, 325, 344, 433, 448, 478
AluI	AGCT	7 cut(s)	113, 278, 325, 344, 433, 448, 478
Alw21I	GWGCWC	1 cut(s)	405
AlwI	GGATC	2 cut(s)	559, 581
AoxI	GGCC	3 cut(s)	190, 303, 628
ApeKI	GCWGC	1 cut(s)	478
ApoI	RAATTY	1 cut(s)	294
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
Asp700I	GAANNNNTTC	2 cut(s)	63, 601
AspS9I	GGNCC	1 cut(s)	93
AsuHPI	GGTGA	2 cut(s)	152, 156
AvaII	GGWCC	1 cut(s)	93
AxyI	CCTNAGG	1 cut(s)	371
BalI	TGGCCA	1 cut(s)	192
BanI	GGYRCC	1 cut(s)	536
Bbv12I	GWGCWC	1 cut(s)	405
BbvI	GCAGC	1 cut(s)	465
BccI	CCATC	2 cut(s)	201, 205
BfrI	CTTAAG	1 cut(s)	503
BisI	GCNGC	1 cut(s)	479
BlsI	GCNGC	1 cut(s)	480
Bme18I	GGWCC	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	93
BmiI	GGNNCC	1 cut(s)	538
BmsI	GCATC	1 cut(s)	571
BoxI	GACNNNNGTC	1 cut(s)	361
Bpu10I	CCTNAGC	1 cut(s)	434
BsaBI	GATNNNNATC	1 cut(s)	585
BsaJI	CCNNGG	3 cut(s)	300, 306, 468
BsaXI	ACNNNNNCTCC	2 cut(s)	505, 535
Bse1I	ACTGG	1 cut(s)	604
Bse21I	CCTNAGG	1 cut(s)	371
Bse8I	GATNNNNATC	1 cut(s)	585
BseDI	CCNNGG	3 cut(s)	300, 306, 468
BseGI	GGATG	2 cut(s)	193, 448
BseJI	GATNNNNATC	1 cut(s)	585
BseNI	ACTGG	1 cut(s)	604
BseRI	GAGGAG	2 cut(s)	526, 532
BseXI	GCAGC	1 cut(s)	465
BsgI	GTGCAG	1 cut(s)	464
BshFI	GGCC	3 cut(s)	192, 305, 630
BshNI	GGYRCC	1 cut(s)	536
BsiHKAI	GWGCWC	1 cut(s)	405
BsiSI	CCGG	1 cut(s)	96
BsnI	GGCC	3 cut(s)	192, 305, 630
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp143I	GATC	4 cut(s)	48, 156, 551, 586
Bsp19I	CCATGG	2 cut(s)	306, 468
BspACI	CCGC	2 cut(s)	138, 473
BspANI	GGCC	3 cut(s)	192, 305, 630
BspLI	GGNNCC	1 cut(s)	538
BspPI	GGATC	2 cut(s)	559, 581
BspQI	GCTCTTC	1 cut(s)	423
BspT107I	GGYRCC	1 cut(s)	536
BspTI	CTTAAG	1 cut(s)	503
BsrI	ACTGG	1 cut(s)	604
BssECI	CCNNGG	3 cut(s)	300, 306, 468
BssMI	GATC	4 cut(s)	48, 156, 551, 586
BssT1I	CCWWGG	2 cut(s)	306, 468
Bst6I	CTCTTC	3 cut(s)	54, 423, 550
BstAFI	CTTAAG	1 cut(s)	503
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	2 cut(s)	371, 434
BstDSI	CCRYGG	2 cut(s)	306, 468
BstF5I	GGATG	2 cut(s)	193, 448
BstKTI	GATC	4 cut(s)	51, 159, 554, 589
BstMBI	GATC	4 cut(s)	48, 156, 551, 586
BstPAI	GACNNNNGTC	1 cut(s)	361
BstV1I	GCAGC	1 cut(s)	465
BstX2I	RGATCY	1 cut(s)	551
BstYI	RGATCY	1 cut(s)	551
Bsu36I	CCTNAGG	1 cut(s)	371
BsuRI	GGCC	3 cut(s)	192, 305, 630
BtgI	CCRYGG	2 cut(s)	306, 468
BtsCI	GGATG	2 cut(s)	193, 448
Cac8I	GCNNGC	1 cut(s)	11
Cfr13I	GGNCC	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	419
CviAII	CATG	5 cut(s)	271, 307, 461, 469, 484
CviQI	GTAC	1 cut(s)	419
DdeI	CTNAG	2 cut(s)	371, 434
DpnI	GATC	4 cut(s)	50, 158, 553, 588
DpnII	GATC	4 cut(s)	48, 156, 551, 586
EaeI	YGGCCR	2 cut(s)	190, 628
Eam1104I	CTCTTC	3 cut(s)	54, 423, 550
EarI	CTCTTC	3 cut(s)	54, 423, 550
EciI	GGCGGA	1 cut(s)	488
Eco130I	CCWWGG	2 cut(s)	306, 468
Eco47I	GGWCC	1 cut(s)	93
Eco81I	CCTNAGG	1 cut(s)	371
EcoT14I	CCWWGG	2 cut(s)	306, 468
ErhI	CCWWGG	2 cut(s)	306, 468
FaeI	CATG	5 cut(s)	274, 310, 464, 472, 487
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FatI	CATG	5 cut(s)	270, 306, 460, 468, 483
FauNDI	CATATG	1 cut(s)	187
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	1 cut(s)	479
FokI	GGATG	2 cut(s)	180, 455
Fsp4HI	GCNGC	1 cut(s)	479
GluI	GCNGC	1 cut(s)	479
HaeIII	GGCC	3 cut(s)	192, 305, 630
HapII	CCGG	1 cut(s)	96
Hin1II	CATG	5 cut(s)	274, 310, 464, 472, 487
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	1 cut(s)	464
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	2 cut(s)	152, 156
Hpy166II	GTNNAC	3 cut(s)	103, 205, 419
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	4 cut(s)	82, 329, 398, 549
Hpy8I	GTNNAC	3 cut(s)	103, 205, 419
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	4 cut(s)	18, 84, 177, 343
HpyCH4V	TGCA	1 cut(s)	481
HpyF3I	CTNAG	2 cut(s)	371, 434
Hsp92II	CATG	5 cut(s)	274, 310, 464, 472, 487
Kzo9I	GATC	4 cut(s)	48, 156, 551, 586
LguI	GCTCTTC	1 cut(s)	423
LmnI	GCTCC	3 cut(s)	352, 372, 475
LpnPI	CCDG	7 cut(s)	109, 120, 156, 367, 419, 534, 585
Lsp1109I	GCAGC	1 cut(s)	465
LweI	GCATC	1 cut(s)	571
MalI	GATC	4 cut(s)	50, 158, 553, 588
MboI	GATC	4 cut(s)	48, 156, 551, 586
MboII	GAAGA	7 cut(s)	55, 58, 59, 71, 151, 440, 537
MflI	RGATCY	1 cut(s)	551
MhlI	GDGCHC	1 cut(s)	405
MlsI	TGGCCA	1 cut(s)	192
MluCI	AATT	2 cut(s)	266, 294
MluNI	TGGCCA	1 cut(s)	192
MmeI	TCCRAC	1 cut(s)	583
MnlI	CCTC	7 cut(s)	14, 55, 136, 295, 504, 550, 553
Mox20I	TGGCCA	1 cut(s)	192
MroXI	GAANNNNTTC	2 cut(s)	63, 601
MscI	TGGCCA	1 cut(s)	192
MseI	TTAA	2 cut(s)	504, 634
Msp20I	TGGCCA	1 cut(s)	192
MspCI	CTTAAG	1 cut(s)	503
MspI	CCGG	1 cut(s)	96
NcoI	CCATGG	2 cut(s)	306, 468
NdeI	CATATG	1 cut(s)	187
NdeII	GATC	4 cut(s)	48, 156, 551, 586
NlaIII	CATG	5 cut(s)	274, 310, 464, 472, 487
NlaIV	GGNNCC	1 cut(s)	538
PciSI	GCTCTTC	1 cut(s)	423
PdmI	GAANNNNTTC	2 cut(s)	63, 601
PfeI	GAWTC	1 cut(s)	464
PflFI	GACNNNGTC	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	480
PshAI	GACNNNNGTC	1 cut(s)	361
PspN4I	GGNNCC	1 cut(s)	538
PspPI	GGNCC	1 cut(s)	93
PsuI	RGATCY	1 cut(s)	551
PsyI	GACNNNGTC	1 cut(s)	209
RsaI	GTAC	1 cut(s)	420
RsaNI	GTAC	1 cut(s)	419
SalI	GTCGAC	1 cut(s)	203
SapI	GCTCTTC	1 cut(s)	423
SaqAI	TTAA	2 cut(s)	504, 634
SatI	GCNGC	1 cut(s)	479
Sau3AI	GATC	4 cut(s)	48, 156, 551, 586
Sau96I	GGNCC	1 cut(s)	93
SduI	GDGCHC	1 cut(s)	405
SfaNI	GCATC	1 cut(s)	571
SinI	GGWCC	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
Sse9I	AATT	2 cut(s)	266, 294
SsiI	CCGC	2 cut(s)	138, 473
SspI	AATATT	1 cut(s)	529
StyI	CCWWGG	2 cut(s)	306, 468
TaqI	TCGA	4 cut(s)	51, 83, 204, 283
TasI	AATT	2 cut(s)	266, 294
TfiI	GAWTC	1 cut(s)	464
Tru1I	TTAA	2 cut(s)	504, 634
Tru9I	TTAA	2 cut(s)	504, 634
TseI	GCWGC	1 cut(s)	478
TspDTI	ATGAA	6 cut(s)	56, 72, 242, 259, 305, 477
Tth111I	GACNNNGTC	1 cut(s)	209
Vha464I	CTTAAG	1 cut(s)	503
VpaK11BI	GGWCC	1 cut(s)	93
XapI	RAATTY	1 cut(s)	294
XmiI	GTMKAC	1 cut(s)	204
XmnI	GAANNNNTTC	2 cut(s)	63, 601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.