Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003506

Physical Location & Seq

Genomic Coordinates Forward (+)

3787626 .. 3788255

Gene Structure 630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G077700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCCAGTGAGGGCAAGAAAACAAGAGGAAGGCAAAGGATAGAGATGAAGAGGATCGAAAAGGAAGATGATCTTCTAGTTTCTTTCTCGAAACGAAGATCTGGGATATCCAAGAAAGCTAGCGATATGGTAACACTATGTGGTGGAGAGGTGGCCATTGTGATTTTCTCACCTTCTAGTAAGCCTTTCTCATTTGGTCACCCATCCATTGATGTTGTTATCAATCGATTCTTAAATCGAAATCCACTGGAAAACAACGAGCACACTCACCAAATCATGGAGGTTCATCGAAATATGAGAATCGCGGATCTCATCCAACTTTTTAACGAGCTTCTAATCCAATTAGAAGCTCTGAAGGAGCAAAGCAAGTTGCTCGAAAAGATATCTAAGACAAGGGGAAATAATCAAGAGTTTTGGTGGAATGCATCTCTTGATGAGCTTGATGTGAACGAGCTTAAACAAACATATGCTTCAATGGCAGAACTACACATGACTATCACCAACCATCTTAAGGAGAGGAGAAATGCTTTTGATGCCTCCTCTTCTTCTGCCCAACAAACCAATCCCAACTTTGATACTAATCCAAGTGGGCTTGGTTCTTATGCATTTCCTCCTAGCTATGGCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04011 ko04111 map04011 map04111

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

210

Amino Acids

23.81

Weight (kDa)

7.89

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28450 AT1G28460 AT1G29962 AT1G54760 AT3G04100
fragaria_vesca	FvH4_6g21070
malus_domestica	MD05G1287200.v1.1 MD10G1264600.v1.1 MD13G1257500.v1.1
prunus_persica	Prupe.1G087700_v2.0.a1 Prupe.4G077700_v2.0.a1 Prupe.5G243900_v2.0.a1
pyrus_communis	pycom05g26570 pycom10g22070
rosa_chinensis	RchiOBHm_Chr3g0477441 RchiOBHm_Chr3g0477451
rosa_laevigata	RLG00000023719 RLG00000023721
rosa_multiflora	Rmu_sc0005234.1_g000012 Rmu_ssc0000341.1_g000014 Rmu_ssc0000341.1_g000016
rosa_roxburghii	Rroxscaffold_6G00404150 Rroxscaffold_6G00404620 Rroxscaffold_6G00404630
rosa_rugosa	Rorug03G0160800 Rorug03G0160900
rosa_samantha	Rh3AG211100 Rh3AG211200 Rh3BG244500 Rh3BG244600 Rh3CG238300 Rh3CG238500 Rh3DG238000
rosa_wichuraiana	Rw3G019130 Rw3G019140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	277
AccII	CGCG	1 cut(s)	305
AciI	CCGC	1 cut(s)	305
AclWI	GGATC	2 cut(s)	62, 315
AcoI	YGGCCR	3 cut(s)	3, 153, 622
AcuI	CTGAAG	1 cut(s)	374
AdeI	CACNNNGTG	1 cut(s)	140
AfiI	CCNNNNNNNGG	3 cut(s)	277, 511, 620
AflII	CTTAAG	1 cut(s)	509
AgsI	TTSAA	1 cut(s)	474
AluBI	AGCT	6 cut(s)	119, 331, 350, 439, 454, 618
AluI	AGCT	6 cut(s)	119, 331, 350, 439, 454, 618
Alw21I	GWGCWC	1 cut(s)	264
AlwI	GGATC	2 cut(s)	62, 315
AoxI	GGCC	3 cut(s)	3, 153, 622
AsuHPI	GGTGA	4 cut(s)	162, 191, 260, 490
AsuNHI	GCTAGC	1 cut(s)	119
BalI	TGGCCA	3 cut(s)	5, 155, 624
Bbv12I	GWGCWC	1 cut(s)	264
BccI	CCATC	2 cut(s)	211, 513
BcgI	CGANNNNNNTGC	2 cut(s)	355, 389
BfaI	CTAG	4 cut(s)	77, 120, 177, 615
BfrI	CTTAAG	1 cut(s)	509
BglII	AGATCT	1 cut(s)	98
BmsI	GCATC	2 cut(s)	434, 523
BmtI	GCTAGC	1 cut(s)	123
Bsa29I	ATCGAT	1 cut(s)	226
BsaBI	GATNNNNATC	1 cut(s)	579
Bsc4I	CCNNNNNNNGG	3 cut(s)	277, 511, 620
Bse1I	ACTGG	2 cut(s)	6, 252
Bse8I	GATNNNNATC	1 cut(s)	579
BseCI	ATCGAT	1 cut(s)	226
BseGI	GGATG	2 cut(s)	203, 312
BseJI	GATNNNNATC	1 cut(s)	579
BseLI	CCNNNNNNNGG	3 cut(s)	277, 511, 620
BseNI	ACTGG	2 cut(s)	6, 252
BseRI	GAGGAG	2 cut(s)	529, 532
Bsh1236I	CGCG	1 cut(s)	305
BshFI	GGCC	3 cut(s)	5, 155, 624
BshVI	ATCGAT	1 cut(s)	226
BsiHKAI	GWGCWC	1 cut(s)	264
BslI	CCNNNNNNNGG	3 cut(s)	277, 511, 620
BsmI	GAATGC	1 cut(s)	427
BsnI	GGCC	3 cut(s)	5, 155, 624
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	4 cut(s)	54, 70, 98, 307
BspACI	CCGC	1 cut(s)	305
BspANI	GGCC	3 cut(s)	5, 155, 624
BspDI	ATCGAT	1 cut(s)	226
BspFNI	CGCG	1 cut(s)	305
BspOI	GCTAGC	1 cut(s)	123
BspPI	GGATC	2 cut(s)	62, 315
BspTI	CTTAAG	1 cut(s)	509
BsrI	ACTGG	2 cut(s)	6, 252
BssMI	GATC	4 cut(s)	54, 70, 98, 307
Bst6I	CTCTTC	2 cut(s)	44, 547
BstAFI	CTTAAG	1 cut(s)	509
BstC8I	GCNNGC	1 cut(s)	121
BstDEI	CTNAG	1 cut(s)	387
BstEII	GGTNACC	1 cut(s)	197
BstF5I	GGATG	2 cut(s)	203, 312
BstFNI	CGCG	1 cut(s)	305
BstKTI	GATC	4 cut(s)	57, 73, 101, 310
BstMBI	GATC	4 cut(s)	54, 70, 98, 307
BstMWI	GCNNNNNNNGC	2 cut(s)	476, 533
BstPI	GGTNACC	1 cut(s)	197
BstUI	CGCG	1 cut(s)	305
BstX2I	RGATCY	2 cut(s)	98, 307
BstYI	RGATCY	2 cut(s)	98, 307
Bsu15I	ATCGAT	1 cut(s)	226
BsuRI	GGCC	3 cut(s)	5, 155, 624
BsuTUI	ATCGAT	1 cut(s)	226
BtsCI	GGATG	2 cut(s)	203, 312
BtsIMutI	CAGTG	2 cut(s)	13, 245
Cac8I	GCNNGC	1 cut(s)	121
ClaI	ATCGAT	1 cut(s)	226
CviAII	CATG	2 cut(s)	277, 490
DdeI	CTNAG	1 cut(s)	387
DpnI	GATC	4 cut(s)	56, 72, 100, 309
DpnII	GATC	4 cut(s)	54, 70, 98, 307
DraIII	CACNNNGTG	1 cut(s)	140
EaeI	YGGCCR	3 cut(s)	3, 153, 622
Eam1104I	CTCTTC	2 cut(s)	44, 547
EarI	CTCTTC	2 cut(s)	44, 547
Eco32I	GATATC	2 cut(s)	108, 384
Eco57I	CTGAAG	1 cut(s)	374
Eco91I	GGTNACC	1 cut(s)	197
EcoO65I	GGTNACC	1 cut(s)	197
EcoRV	GATATC	2 cut(s)	108, 384
EcoT22I	ATGCAT	2 cut(s)	427, 607
FaeI	CATG	2 cut(s)	280, 493
FaiI	YATR	9 cut(s)	128, 139, 278, 296, 466, 468, 491, 603, 621
FalI	AAGNNNNNCTT	2 cut(s)	57, 89
FatI	CATG	2 cut(s)	276, 489
FauNDI	CATATG	1 cut(s)	466
FokI	GGATG	2 cut(s)	190, 299
FspBI	CTAG	4 cut(s)	77, 120, 177, 615
HaeIII	GGCC	3 cut(s)	5, 155, 624
Hin1II	CATG	2 cut(s)	280, 493
HinfI	GANTC	2 cut(s)	228, 300
HphI	GGTGA	4 cut(s)	162, 191, 260, 490
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	1 cut(s)	354
Hpy188III	TCNNGA	3 cut(s)	88, 407, 431
Hpy8I	GTNNAC	1 cut(s)	448
HpyAV	CCTTC	3 cut(s)	24, 183, 349
HpyCH4V	TGCA	2 cut(s)	425, 605
HpyF10VI	GCNNNNNNNGC	2 cut(s)	476, 533
HpyF3I	CTNAG	1 cut(s)	387
Hsp92II	CATG	2 cut(s)	280, 493
Kzo9I	GATC	4 cut(s)	54, 70, 98, 307
LmnI	GCTCC	1 cut(s)	358
LpnPI	CCDG	3 cut(s)	19, 87, 233
LweI	GCATC	2 cut(s)	434, 523
MaeI	CTAG	4 cut(s)	77, 120, 177, 615
MaeIII	GTNAC	2 cut(s)	130, 197
MalI	GATC	4 cut(s)	56, 72, 100, 309
MboI	GATC	4 cut(s)	54, 70, 98, 307
MboII	GAAGA	6 cut(s)	61, 65, 77, 108, 534, 537
MflI	RGATCY	2 cut(s)	98, 307
MhlI	GDGCHC	1 cut(s)	264
MlsI	TGGCCA	3 cut(s)	5, 155, 624
MluCI	AATT	1 cut(s)	341
MluNI	TGGCCA	3 cut(s)	5, 155, 624
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	9 cut(s)	4, 20, 45, 142, 274, 510, 547, 550, 621
Mox20I	TGGCCA	3 cut(s)	5, 155, 624
Mph1103I	ATGCAT	2 cut(s)	427, 607
MscI	TGGCCA	3 cut(s)	5, 155, 624
MseI	TTAA	5 cut(s)	233, 324, 456, 510, 628
Msp20I	TGGCCA	3 cut(s)	5, 155, 624
MspCI	CTTAAG	1 cut(s)	509
Mva1269I	GAATGC	1 cut(s)	427
MvnI	CGCG	1 cut(s)	305
MwoI	GCNNNNNNNGC	2 cut(s)	476, 533
NdeI	CATATG	1 cut(s)	466
NdeII	GATC	4 cut(s)	54, 70, 98, 307
NheI	GCTAGC	1 cut(s)	119
NlaIII	CATG	2 cut(s)	280, 493
NmuCI	GTSAC	1 cut(s)	197
NsiI	ATGCAT	2 cut(s)	427, 607
PctI	GAATGC	1 cut(s)	427
PfeI	GAWTC	2 cut(s)	228, 300
PflMI	CCANNNNNTGG	1 cut(s)	277
PspEI	GGTNACC	1 cut(s)	197
PsuI	RGATCY	2 cut(s)	98, 307
SaqAI	TTAA	5 cut(s)	233, 324, 456, 510, 628
Sau3AI	GATC	4 cut(s)	54, 70, 98, 307
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	9 cut(s)	121, 153, 175, 285, 333, 352, 441, 456, 620
SfaNI	GCATC	2 cut(s)	434, 523
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
Sse9I	AATT	1 cut(s)	341
SsiI	CCGC	1 cut(s)	305
SspMI	CTAG	4 cut(s)	77, 120, 177, 615
TaqI	TCGA	6 cut(s)	57, 89, 226, 238, 289, 375
TasI	AATT	1 cut(s)	341
TfiI	GAWTC	2 cut(s)	228, 300
Tru1I	TTAA	5 cut(s)	233, 324, 456, 510, 628
Tru9I	TTAA	5 cut(s)	233, 324, 456, 510, 628
TscAI	CASTG	2 cut(s)	13, 252
TseFI	GTSAC	1 cut(s)	197
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	2 cut(s)	62, 275
TspRI	CASTG	2 cut(s)	13, 252
Van91I	CCANNNNNTGG	1 cut(s)	277
Vha464I	CTTAAG	1 cut(s)	509
XspI	CTAG	4 cut(s)	77, 120, 177, 615
Zsp2I	ATGCAT	2 cut(s)	427, 607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.