Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003506

Physical Location & Seq

Genomic Coordinates Forward (+)

6532178 .. 6532777

Gene Structure 600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G087700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAAGGCAGGAGAACCAGAGGCAGGCAAAAGATCGATATCAAGAAGATAGAAAATGAAGATGATCGACTTATTACTTTTTCAAAACGGAGATCCGGAATATACAAGAAGGCTAGTGAGTTAGCGGCTCTATGCGGCGCAGAAGTTGGCGTTGTAGTTTTTTCCCCAAAAGGAAAACCTTATTCGTATGGTAGCCCTGGTATTGAGTATGTGGCGAACCGATTTTTAAATGTTGTTGCTGATCAAAATGCTGATGAGAGGATCTCTCATGGCATTCTGGAGGTGTACCGGCAGGCAAGAGTCTATGAGGTGAACGAGAACCATAATGAGCTGGTAGGGCAGCTTGAGGCTGTGAAAGAGCAGAGCAAGGCGCTGCAACAGTTGGTAGAAGAAAGGGGAAGCGGGGAGCAACAGTGTTGGTGGGAGCCTGCTCTTCATAATCAGGACTTGCAAGGTGTCAAGAATATTCATGAGTCCTTTAAAGGACTGGTAAATCATGTGTGCACCCATCTCAAGCTCAGATATGGGAGCAGCAGCAACAGCTTTGATATTGGCATTGCTTCTTCTTCTGCAGCACTACCCTTCCATGCAGCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04011 ko04111 map04011 map04111

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

200

Amino Acids

22.26

Weight (kDa)

7.76

Isoelectric Point (pI)

49.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28450 AT1G28460 AT1G29962 AT1G54760 AT3G04100
fragaria_vesca	FvH4_6g21070
malus_domestica	MD05G1287200.v1.1 MD10G1264600.v1.1 MD13G1257500.v1.1
prunus_persica	Prupe.1G087700_v2.0.a1 Prupe.4G077700_v2.0.a1 Prupe.5G243900_v2.0.a1
pyrus_communis	pycom05g26570 pycom10g22070
rosa_chinensis	RchiOBHm_Chr3g0477441 RchiOBHm_Chr3g0477451
rosa_laevigata	RLG00000023719 RLG00000023721
rosa_multiflora	Rmu_sc0005234.1_g000012 Rmu_ssc0000341.1_g000014 Rmu_ssc0000341.1_g000016
rosa_roxburghii	Rroxscaffold_6G00404150 Rroxscaffold_6G00404620 Rroxscaffold_6G00404630
rosa_rugosa	Rorug03G0160800 Rorug03G0160900
rosa_samantha	Rh3AG211100 Rh3AG211200 Rh3BG244500 Rh3BG244600 Rh3CG238300 Rh3CG238500 Rh3DG238000
rosa_wichuraiana	Rw3G019130 Rw3G019140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	95
AciI	CCGC	3 cut(s)	125, 135, 402
AclWI	GGATC	2 cut(s)	87, 269
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	24
AgsI	TTSAA	1 cut(s)	84
AjnI	CCWGG	1 cut(s)	196
AluBI	AGCT	4 cut(s)	331, 343, 517, 543
AluI	AGCT	4 cut(s)	331, 343, 517, 543
Alw21I	GWGCWC	1 cut(s)	506
Alw44I	GTGCAC	1 cut(s)	502
AlwI	GGATC	2 cut(s)	87, 269
Aor13HI	TCCGGA	1 cut(s)	95
ApaLI	GTGCAC	1 cut(s)	502
ApeKI	GCWGC	6 cut(s)	340, 373, 531, 534, 572, 590
AspLEI	GCGC	2 cut(s)	140, 373
AsuHPI	GGTGA	1 cut(s)	322
BaeGI	GKGCMC	1 cut(s)	506
Bbv12I	GWGCWC	1 cut(s)	506
BbvI	GCAGC	5 cut(s)	352, 360, 543, 546, 584
BccI	CCATC	1 cut(s)	516
BciT130I	CCWGG	1 cut(s)	198
BclI	TGATCA	1 cut(s)	241
BfaI	CTAG	1 cut(s)	114
BfmI	CTRYAG	1 cut(s)	570
BfoI	RGCGCY	1 cut(s)	374
BisI	GCNGC	8 cut(s)	126, 136, 341, 374, 532, 535, 573, 591
BlsI	GCNGC	8 cut(s)	127, 137, 342, 375, 533, 536, 574, 592
Bme1390I	CCNGG	1 cut(s)	198
BmiI	GGNNCC	1 cut(s)	426
BmrFI	CCNGG	1 cut(s)	198
BplI	GAGNNNNNCTC	4 cut(s)	248, 280, 250, 282
BpmI	CTGGAG	1 cut(s)	299
BpuEI	CTTGAG	2 cut(s)	365, 497
Bsa29I	ATCGAT	1 cut(s)	36
BsaBI	GATNNNNATC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	196
BsaWI	WCCGGW	1 cut(s)	95
BsaXI	ACNNNNNCTCC	2 cut(s)	398, 428
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse118I	RCCGGY	1 cut(s)	288
Bse1I	ACTGG	1 cut(s)	492
Bse3DI	GCAATG	1 cut(s)	555
Bse8I	GATNNNNATC	1 cut(s)	38
BseAI	TCCGGA	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	198
BseCI	ATCGAT	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	196
BseJI	GATNNNNATC	1 cut(s)	38
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMI	GCAATG	1 cut(s)	555
BseMII	CTCAG	1 cut(s)	532
BseNI	ACTGG	1 cut(s)	492
BseSI	GKGCMC	1 cut(s)	506
BseXI	GCAGC	5 cut(s)	352, 360, 543, 546, 584
BshVI	ATCGAT	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	506
BsiSI	CCGG	2 cut(s)	96, 289
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmI	GAATGC	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	506
Bsp13I	TCCGGA	1 cut(s)	95
Bsp143I	GATC	5 cut(s)	33, 64, 92, 241, 261
BspACI	CCGC	3 cut(s)	125, 135, 402
BspCNI	CTCAG	1 cut(s)	531
BspDI	ATCGAT	1 cut(s)	36
BspEI	TCCGGA	1 cut(s)	95
BspHI	TCATGA	1 cut(s)	469
BspLI	GGNNCC	1 cut(s)	426
BspMAI	CTGCAG	1 cut(s)	574
BspPI	GGATC	2 cut(s)	87, 269
BspQI	GCTCTTC	1 cut(s)	438
BsrDI	GCAATG	1 cut(s)	555
BsrFI	RCCGGY	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	492
BssAI	RCCGGY	1 cut(s)	288
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	5 cut(s)	33, 64, 92, 241, 261
Bst2UI	CCWGG	1 cut(s)	198
Bst4CI	ACNGT	2 cut(s)	381, 414
Bst6I	CTCTTC	1 cut(s)	438
BstC8I	GCNNGC	3 cut(s)	26, 294, 429
BstDEI	CTNAG	1 cut(s)	518
BstH2I	RGCGCY	1 cut(s)	374
BstHHI	GCGC	2 cut(s)	140, 373
BstKTI	GATC	5 cut(s)	36, 67, 95, 244, 264
BstMBI	GATC	5 cut(s)	33, 64, 92, 241, 261
BstMWI	GCNNNNNNNGC	2 cut(s)	337, 540
BstNI	CCWGG	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	196
BstSFI	CTRYAG	1 cut(s)	570
BstSLI	GKGCMC	1 cut(s)	506
BstV1I	GCAGC	5 cut(s)	352, 360, 543, 546, 584
BstX2I	RGATCY	2 cut(s)	92, 261
BstYI	RGATCY	2 cut(s)	92, 261
Bsu15I	ATCGAT	1 cut(s)	36
BsuTUI	ATCGAT	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	419
Cac8I	GCNNGC	3 cut(s)	26, 294, 429
CciI	TCATGA	1 cut(s)	469
CfoI	GCGC	2 cut(s)	140, 373
Cfr10I	RCCGGY	1 cut(s)	288
ClaI	ATCGAT	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	5 cut(s)	269, 470, 497, 587, 597
CviJI	RGCY	9 cut(s)	113, 128, 195, 331, 343, 350, 427, 517, 543
CviKI_1	RGCY	9 cut(s)	113, 128, 195, 331, 343, 350, 427, 517, 543
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	1 cut(s)	518
DpnI	GATC	5 cut(s)	35, 66, 94, 243, 263
DpnII	GATC	5 cut(s)	33, 64, 92, 241, 261
DraI	TTTAAA	2 cut(s)	228, 481
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Eco32I	GATATC	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	196
EcoRV	GATATC	1 cut(s)	40
FaeI	CATG	5 cut(s)	272, 473, 500, 590, 600
FatI	CATG	5 cut(s)	268, 469, 496, 586, 596
FauI	CCCGC	1 cut(s)	395
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	8 cut(s)	126, 136, 341, 374, 532, 535, 573, 591
Fsp4HI	GCNGC	8 cut(s)	126, 136, 341, 374, 532, 535, 573, 591
FspBI	CTAG	1 cut(s)	114
GlaI	GCGC	2 cut(s)	139, 372
GluI	GCNGC	8 cut(s)	126, 136, 341, 374, 532, 535, 573, 591
GsuI	CTGGAG	1 cut(s)	299
HaeII	RGCGCY	1 cut(s)	374
HapII	CCGG	2 cut(s)	96, 289
HhaI	GCGC	2 cut(s)	140, 373
Hin1II	CATG	5 cut(s)	272, 473, 500, 590, 600
Hin6I	GCGC	2 cut(s)	138, 371
HinP1I	GCGC	2 cut(s)	138, 371
HinfI	GANTC	2 cut(s)	300, 473
HpaII	CCGG	2 cut(s)	96, 289
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	3 cut(s)	286, 313, 504
Hpy188I	TCNGA	1 cut(s)	521
Hpy188III	TCNNGA	6 cut(s)	43, 96, 278, 443, 460, 470
Hpy8I	GTNNAC	3 cut(s)	286, 313, 504
HpyAV	CCTTC	2 cut(s)	103, 592
HpyCH4III	ACNGT	2 cut(s)	381, 414
HpyCH4V	TGCA	5 cut(s)	376, 451, 504, 572, 590
HpyF10VI	GCNNNNNNNGC	2 cut(s)	337, 540
HpyF3I	CTNAG	1 cut(s)	518
Hsp92II	CATG	5 cut(s)	272, 473, 500, 590, 600
HspAI	GCGC	2 cut(s)	138, 371
Kpn2I	TCCGGA	1 cut(s)	95
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	5 cut(s)	33, 64, 92, 241, 261
LguI	GCTCTTC	1 cut(s)	438
LmnI	GCTCC	3 cut(s)	406, 424, 528
Lsp1109I	GCAGC	5 cut(s)	352, 360, 543, 546, 584
MaeI	CTAG	1 cut(s)	114
MalI	GATC	5 cut(s)	35, 66, 94, 243, 263
MboI	GATC	5 cut(s)	33, 64, 92, 241, 261
MboII	GAAGA	6 cut(s)	58, 71, 401, 425, 555, 558
MflI	RGATCY	2 cut(s)	92, 261
MhlI	GDGCHC	1 cut(s)	506
MlyI	GAGTC	2 cut(s)	309, 482
MnlI	CCTC	5 cut(s)	14, 252, 274, 301, 340
MroI	TCCGGA	1 cut(s)	95
MseI	TTAA	2 cut(s)	227, 480
MspI	CCGG	2 cut(s)	96, 289
MspR9I	CCNGG	1 cut(s)	198
Mva1269I	GAATGC	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	2 cut(s)	337, 540
NdeII	GATC	5 cut(s)	33, 64, 92, 241, 261
NlaIII	CATG	5 cut(s)	272, 473, 500, 590, 600
NlaIV	GGNNCC	1 cut(s)	426
PagI	TCATGA	1 cut(s)	469
PciSI	GCTCTTC	1 cut(s)	438
PctI	GAATGC	1 cut(s)	273
PkrI	GCNGC	8 cut(s)	127, 137, 342, 375, 533, 536, 574, 592
PleI	GAGTC	2 cut(s)	308, 481
PpsI	GAGTC	2 cut(s)	308, 481
Psp6I	CCWGG	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	196
PspN4I	GGNNCC	1 cut(s)	426
PstI	CTGCAG	1 cut(s)	574
PsuI	RGATCY	2 cut(s)	92, 261
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SapI	GCTCTTC	1 cut(s)	438
SaqAI	TTAA	2 cut(s)	227, 480
SatI	GCNGC	8 cut(s)	126, 136, 341, 374, 532, 535, 573, 591
Sau3AI	GATC	5 cut(s)	33, 64, 92, 241, 261
SchI	GAGTC	2 cut(s)	309, 482
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	1 cut(s)	506
SetI	ASST	8 cut(s)	181, 285, 312, 333, 345, 457, 519, 545
SfcI	CTRYAG	1 cut(s)	570
SmlI	CTYRAG	2 cut(s)	344, 512
SmoI	CTYRAG	2 cut(s)	344, 512
SsiI	CCGC	3 cut(s)	125, 135, 402
SspI	AATATT	1 cut(s)	466
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	196
TaaI	ACNGT	2 cut(s)	381, 414
TaqI	TCGA	2 cut(s)	36, 67
TauI	GCSGC	2 cut(s)	128, 138
Tru1I	TTAA	2 cut(s)	227, 480
Tru9I	TTAA	2 cut(s)	227, 480
TscAI	CASTG	1 cut(s)	419
TseI	GCWGC	6 cut(s)	340, 373, 531, 534, 572, 590
TspDTI	ATGAA	3 cut(s)	72, 425, 458
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	1 cut(s)	419
VneI	GTGCAC	1 cut(s)	502
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.