Rh3CG238500
MADS Family

Agamous-like MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0003506
Physical Location & Seq
Forward (+)
22821167 .. 22822405
1239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG238500.1

Sequence Viewer

Length: 612 bp
ATGGAAGGAGGCAAGAAAACAAAAGGCAGGCAAAAGATTCCAATAAAAAAGATTGAGAACGTTAACGAACGTCAAGTGACGTTTTCTAAAAGAAAATCTGGCGTTATAAAAAAAGCCAGTGAAATGTCGACCCTCACTGGTGCACATGTTTGTTTAGTGATATTCTCCGAGGCCGGGAAACCCTACTCTTTCGGCAGTCCCTCTATTGAATCTGTAGCCGGCCGATTCTTGCCGGAGCTACAAAACCAAAACCAAATTAGTGATGATGCCCGGGCTGTACTTGAGGCTAATCGCCAGGCAAGAGTGGACGGTATCCTCAGGATACACAACGACTTAGAAAGCAAGCTGAAAGAAGACAGAGATCGAGCAAAGGAGCTTCGGAAAAGAGAAAGGGCAGGAACAAGCAAAGATCAGGGCGGCCTTTGCTGGTGGGAGAAACCTATGGAGGGGCTTGAGTTGGCGGAACTCAAACAGATGCATTCTTCATTTGAACGTCTCCAGAATTATCTAGCCTCCTATCTCAAAAGCACCGCCTCTGCTGGTGGCTCCTCATCTGGCGGCGCAACCGGTATCCCTCCTGGTACATTGCCTGCACGCTTCGGATTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

203

Amino Acids

22.33

Weight (kDa)

9.61

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 17 - 64 6.6e-23 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 107
AccI GTMKAC 1 cut(s) 128
AciI CCGC 4 cut(s) 417, 461, 531, 558
AclI AACGTT 1 cut(s) 60
AcoI YGGCCR 1 cut(s) 220
AfaI GTAC 2 cut(s) 279, 583
AfiI CCNNNNNNNGG 2 cut(s) 174, 446
AflIII ACRYGT 1 cut(s) 145
AgeI ACCGGT 1 cut(s) 566
AgsI TTSAA 2 cut(s) 209, 491
AjnI CCWGG 2 cut(s) 294, 577
AluBI AGCT 3 cut(s) 238, 346, 376
AluI AGCT 3 cut(s) 238, 346, 376
Alw21I GWGCWC 1 cut(s) 145
Alw26I GTCTC 1 cut(s) 500
Alw44I GTGCAC 1 cut(s) 141
Ama87I CYCGRG 1 cut(s) 270
AoxI GGCC 3 cut(s) 171, 220, 418
ApaLI GTGCAC 1 cut(s) 141
AsiGI ACCGGT 1 cut(s) 566
AspLEI GCGC 1 cut(s) 563
AsuC2I CCSGG 3 cut(s) 175, 271, 272
AvaI CYCGRG 1 cut(s) 270
AxyI CCTNAGG 1 cut(s) 317
BaeGI GKGCMC 1 cut(s) 145
BbsI GAAGAC 1 cut(s) 360
Bbv12I GWGCWC 1 cut(s) 145
BciT130I CCWGG 2 cut(s) 296, 579
BciVI GTATCC 3 cut(s) 315, 323, 581
BcnI CCSGG 3 cut(s) 175, 271, 272
BcoDI GTCTC 1 cut(s) 500
BfaI CTAG 1 cut(s) 509
BfmI CTRYAG 1 cut(s) 213
BfuI GTATCC 3 cut(s) 315, 323, 581
BisI GCNGC 2 cut(s) 418, 559
BlsI GCNGC 2 cut(s) 419, 560
Bme1390I CCNGG 5 cut(s) 175, 271, 272, 296, 579
BmeT110I CYCGRG 1 cut(s) 270
BmiI GGNNCC 1 cut(s) 547
BmrFI CCNGG 5 cut(s) 175, 271, 272, 296, 579
BmsI GCATC 2 cut(s) 256, 465
BpiI GAAGAC 1 cut(s) 360
BpmI CTGGAG 1 cut(s) 482
BpuEI CTTGAG 2 cut(s) 302, 473
BpuMI CCSGG 3 cut(s) 175, 271, 272
BsaJI CCNNGG 2 cut(s) 168, 270
BsaWI WCCGGW 1 cut(s) 566
Bsc4I CCNNNNNNNGG 2 cut(s) 174, 446
Bse118I RCCGGY 2 cut(s) 218, 566
Bse1I ACTGG 2 cut(s) 117, 142
Bse21I CCTNAGG 1 cut(s) 317
Bse3DI GCAATG 1 cut(s) 584
BseBI CCWGG 2 cut(s) 296, 579
BseDI CCNNGG 2 cut(s) 168, 270
BseLI CCNNNNNNNGG 2 cut(s) 174, 446
BseMI GCAATG 1 cut(s) 584
BseMII CTCAG 1 cut(s) 331
BseNI ACTGG 2 cut(s) 117, 142
BseRI GAGGAG 1 cut(s) 538
BseSI GKGCMC 1 cut(s) 145
BseX3I CGGCCG 1 cut(s) 220
BsgI GTGCAG 1 cut(s) 576
Bsh1285I CGRYCG 1 cut(s) 223
BshFI GGCC 3 cut(s) 173, 222, 420
BshTI ACCGGT 1 cut(s) 566
BsiEI CGRYCG 1 cut(s) 223
BsiHKAI GWGCWC 1 cut(s) 145
BsiHKCI CYCGRG 1 cut(s) 270
BsiSI CCGG 5 cut(s) 174, 219, 233, 271, 567
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 2 cut(s) 174, 446
BsmAI GTCTC 1 cut(s) 500
BsmBI CGTCTC 1 cut(s) 500
BsmFI GGGAC 1 cut(s) 183
BsmI GAATGC 1 cut(s) 478
BsnI GGCC 3 cut(s) 173, 222, 420
BsoBI CYCGRG 1 cut(s) 270
Bsp1286I GDGCHC 1 cut(s) 145
Bsp143I GATC 2 cut(s) 361, 409
BspACI CCGC 4 cut(s) 417, 461, 531, 558
BspANI GGCC 3 cut(s) 173, 222, 420
BspCNI CTCAG 1 cut(s) 330
BspLI GGNNCC 1 cut(s) 547
BsrDI GCAATG 1 cut(s) 584
BsrFI RCCGGY 2 cut(s) 218, 566
BsrI ACTGG 2 cut(s) 117, 142
BssAI RCCGGY 2 cut(s) 218, 566
BssECI CCNNGG 2 cut(s) 168, 270
BssMI GATC 2 cut(s) 361, 409
Bst2UI CCWGG 2 cut(s) 296, 579
Bst4CI ACNGT 1 cut(s) 311
BstC8I GCNNGC 5 cut(s) 29, 220, 344, 591, 595
BstDEI CTNAG 2 cut(s) 317, 334
BstHHI GCGC 1 cut(s) 563
BstKTI GATC 2 cut(s) 364, 412
BstMAI GTCTC 1 cut(s) 500
BstMBI GATC 2 cut(s) 361, 409
BstMCI CGRYCG 1 cut(s) 223
BstMWI GCNNNNNNNGC 1 cut(s) 423
BstNI CCWGG 2 cut(s) 296, 579
BstNSI RCATGY 1 cut(s) 149
BstSCI CCNGG 5 cut(s) 173, 269, 270, 294, 577
BstSFI CTRYAG 1 cut(s) 213
BstSLI GKGCMC 1 cut(s) 145
BstV2I GAAGAC 1 cut(s) 360
BstZI CGGCCG 1 cut(s) 220
Bsu36I CCTNAGG 1 cut(s) 317
BsuI GTATCC 3 cut(s) 315, 323, 581
BsuRI GGCC 3 cut(s) 173, 222, 420
BtsIMutI CAGTG 2 cut(s) 124, 135
Cac8I GCNNGC 5 cut(s) 29, 220, 344, 591, 595
CfoI GCGC 1 cut(s) 563
Cfr10I RCCGGY 2 cut(s) 218, 566
Cfr9I CCCGGG 1 cut(s) 270
Csp6I GTAC 2 cut(s) 278, 582
CspAI ACCGGT 1 cut(s) 566
CviAII CATG 1 cut(s) 146
CviQI GTAC 2 cut(s) 278, 582
DdeI CTNAG 2 cut(s) 317, 334
DpnI GATC 2 cut(s) 363, 411
DpnII GATC 2 cut(s) 361, 409
EaeI YGGCCR 1 cut(s) 220
EagI CGGCCG 1 cut(s) 220
EciI GGCGGA 1 cut(s) 476
EclXI CGGCCG 1 cut(s) 220
Eco52I CGGCCG 1 cut(s) 220
Eco81I CCTNAGG 1 cut(s) 317
Eco88I CYCGRG 1 cut(s) 270
EcoRII CCWGG 2 cut(s) 294, 577
EcoT22I ATGCAT 1 cut(s) 480
Esp3I CGTCTC 1 cut(s) 500
FaeI CATG 1 cut(s) 149
FaiI YATR 3 cut(s) 107, 147, 443
FaqI GGGAC 1 cut(s) 183
FatI CATG 1 cut(s) 145
FblI GTMKAC 1 cut(s) 128
Fnu4HI GCNGC 2 cut(s) 418, 559
Fsp4HI GCNGC 2 cut(s) 418, 559
FspBI CTAG 1 cut(s) 509
GlaI GCGC 1 cut(s) 562
GluI GCNGC 2 cut(s) 418, 559
GsuI CTGGAG 1 cut(s) 482
HaeIII GGCC 3 cut(s) 173, 222, 420
HapII CCGG 5 cut(s) 174, 219, 233, 271, 567
HhaI GCGC 1 cut(s) 563
Hin1II CATG 1 cut(s) 149
Hin6I GCGC 1 cut(s) 561
HinP1I GCGC 1 cut(s) 561
HincII GTYRAC 2 cut(s) 64, 129
HindII GTYRAC 2 cut(s) 64, 129
HinfI GANTC 3 cut(s) 37, 209, 225
HpaI GTTAAC 1 cut(s) 64
HpaII CCGG 5 cut(s) 174, 219, 233, 271, 567
Hpy166II GTNNAC 4 cut(s) 64, 129, 143, 307
Hpy188I TCNGA 3 cut(s) 169, 381, 602
Hpy188III TCNNGA 2 cut(s) 319, 499
Hpy8I GTNNAC 4 cut(s) 64, 129, 143, 307
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4IV ACGT 4 cut(s) 60, 70, 80, 493
HpyCH4V TGCA 3 cut(s) 143, 478, 593
HpyF10VI GCNNNNNNNGC 1 cut(s) 423
HpyF3I CTNAG 2 cut(s) 317, 334
HpySE526I ACGT 4 cut(s) 60, 70, 80, 493
Hsp92II CATG 1 cut(s) 149
HspAI GCGC 1 cut(s) 561
KroI GCCGGC 1 cut(s) 218
KroNI GCCGGC 1 cut(s) 220
KspAI GTTAAC 1 cut(s) 64
Kzo9I GATC 2 cut(s) 361, 409
LmnI GCTCC 3 cut(s) 235, 373, 551
LweI GCATC 2 cut(s) 256, 465
MaeI CTAG 1 cut(s) 509
MaeII ACGT 4 cut(s) 60, 70, 80, 493
MaeIII GTNAC 1 cut(s) 76
MalI GATC 2 cut(s) 363, 411
MboI GATC 2 cut(s) 361, 409
MboII GAAGA 2 cut(s) 365, 474
MhlI GDGCHC 1 cut(s) 145
MluCI AATT 2 cut(s) 255, 502
Mph1103I ATGCAT 1 cut(s) 480
MroNI GCCGGC 1 cut(s) 218
MseI TTAA 1 cut(s) 63
MspI CCGG 5 cut(s) 174, 219, 233, 271, 567
MspR9I CCNGG 5 cut(s) 175, 271, 272, 296, 579
Mva1269I GAATGC 1 cut(s) 478
MvaI CCWGG 2 cut(s) 296, 579
MwoI GCNNNNNNNGC 1 cut(s) 423
NaeI GCCGGC 1 cut(s) 220
NciI CCSGG 3 cut(s) 175, 271, 272
NdeII GATC 2 cut(s) 361, 409
NgoMIV GCCGGC 1 cut(s) 218
NlaIII CATG 1 cut(s) 149
NlaIV GGNNCC 1 cut(s) 547
NmuCI GTSAC 1 cut(s) 76
NsiI ATGCAT 1 cut(s) 480
NspI RCATGY 1 cut(s) 149
PciI ACATGT 1 cut(s) 145
PctI GAATGC 1 cut(s) 478
PdiI GCCGGC 1 cut(s) 220
PfeI GAWTC 3 cut(s) 37, 209, 225
PinAI ACCGGT 1 cut(s) 566
PkrI GCNGC 2 cut(s) 419, 560
PscI ACATGT 1 cut(s) 145
PsiI TTATAA 1 cut(s) 107
Psp1406I AACGTT 1 cut(s) 60
Psp6I CCWGG 2 cut(s) 294, 577
PspGI CCWGG 2 cut(s) 294, 577
PspN4I GGNNCC 1 cut(s) 547
RsaI GTAC 2 cut(s) 279, 583
RsaNI GTAC 2 cut(s) 278, 582
SalI GTCGAC 1 cut(s) 127
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 2 cut(s) 418, 559
Sau3AI GATC 2 cut(s) 361, 409
ScrFI CCNGG 5 cut(s) 175, 271, 272, 296, 579
SduI GDGCHC 1 cut(s) 145
SetI ASST 8 cut(s) 63, 73, 83, 240, 348, 378, 442, 496
SfaNI GCATC 2 cut(s) 256, 465
SfcI CTRYAG 1 cut(s) 213
SmaI CCCGGG 1 cut(s) 272
SmlI CTYRAG 2 cut(s) 281, 452
SmoI CTYRAG 2 cut(s) 281, 452
SrfI GCCCGGGC 1 cut(s) 272
Sse9I AATT 2 cut(s) 255, 502
SsiI CCGC 4 cut(s) 417, 461, 531, 558
SspMI CTAG 1 cut(s) 509
StyD4I CCNGG 5 cut(s) 173, 269, 270, 294, 577
TaaI ACNGT 1 cut(s) 311
TaiI ACGT 4 cut(s) 63, 73, 83, 496
TaqI TCGA 2 cut(s) 128, 364
TasI AATT 2 cut(s) 255, 502
TatI WGTACW 1 cut(s) 277
TauI GCSGC 2 cut(s) 420, 561
TfiI GAWTC 3 cut(s) 37, 209, 225
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 2 cut(s) 124, 142
TseFI GTSAC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 474
TspMI CCCGGG 1 cut(s) 270
TspRI CASTG 2 cut(s) 124, 142
VneI GTGCAC 1 cut(s) 141
XceI RCATGY 1 cut(s) 149
XmaI CCCGGG 1 cut(s) 270
XmiI GTMKAC 1 cut(s) 128
XspI CTAG 1 cut(s) 509
Zsp2I ATGCAT 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.