Agamous-like MADS-box protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G28450 AT1G28460 AT1G29962 AT1G54760 AT3G04100 |
| fragaria_vesca | FvH4_6g21070 |
| malus_domestica | MD05G1287200.v1.1 MD10G1264600.v1.1 MD13G1257500.v1.1 |
| prunus_persica | Prupe.1G087700_v2.0.a1 Prupe.4G077700_v2.0.a1 Prupe.5G243900_v2.0.a1 |
| pyrus_communis | pycom05g26570 pycom10g22070 |
| rosa_chinensis | RchiOBHm_Chr3g0477441 RchiOBHm_Chr3g0477451 |
| rosa_laevigata | RLG00000023719 RLG00000023721 |
| rosa_multiflora | Rmu_sc0005234.1_g000012 Rmu_ssc0000341.1_g000014 Rmu_ssc0000341.1_g000016 |
| rosa_roxburghii | Rroxscaffold_6G00404150 Rroxscaffold_6G00404620 Rroxscaffold_6G00404630 |
| rosa_rugosa | Rorug03G0160800 Rorug03G0160900 |
| rosa_samantha | Rh3AG211100 Rh3AG211200 Rh3BG244500 Rh3BG244600 Rh3CG238300 Rh3CG238500 Rh3DG238000 |
| rosa_wichuraiana | Rw3G019130 Rw3G019140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 23 |
| AciI | CCGC | 2 cut(s) | 48, 384 |
| AclWI | GGATC | 2 cut(s) | 55, 114 |
| AcvI | CACGTG | 1 cut(s) | 214 |
| AfaI | GTAC | 1 cut(s) | 57 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 23 |
| AgsI | TTSAA | 2 cut(s) | 40, 244 |
| AjnI | CCWGG | 2 cut(s) | 63, 147 |
| AluBI | AGCT | 4 cut(s) | 20, 94, 205, 316 |
| AluI | AGCT | 4 cut(s) | 20, 94, 205, 316 |
| Alw21I | GWGCWC | 1 cut(s) | 207 |
| AlwI | GGATC | 2 cut(s) | 55, 114 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 23, 154 |
| Ama87I | CYCGRG | 1 cut(s) | 336 |
| AsuHPI | GGTGA | 1 cut(s) | 6 |
| AvaI | CYCGRG | 1 cut(s) | 336 |
| BanII | GRGCYC | 1 cut(s) | 207 |
| BbrPI | CACGTG | 1 cut(s) | 214 |
| BbsI | GAAGAC | 1 cut(s) | 357 |
| Bbv12I | GWGCWC | 1 cut(s) | 207 |
| BccI | CCATC | 1 cut(s) | 151 |
| BciT130I | CCWGG | 2 cut(s) | 65, 149 |
| BfaI | CTAG | 1 cut(s) | 95 |
| BisI | GCNGC | 1 cut(s) | 385 |
| BlsI | GCNGC | 1 cut(s) | 386 |
| Bme1390I | CCNGG | 2 cut(s) | 65, 149 |
| BmeT110I | CYCGRG | 1 cut(s) | 336 |
| BmrFI | CCNGG | 2 cut(s) | 65, 149 |
| BpiI | GAAGAC | 1 cut(s) | 357 |
| BpuEI | CTTGAG | 1 cut(s) | 283 |
| BsaAI | YACGTR | 2 cut(s) | 214, 403 |
| BsaJI | CCNNGG | 4 cut(s) | 64, 147, 148, 337 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 23 |
| Bse3DI | GCAATG | 1 cut(s) | 76 |
| BseBI | CCWGG | 2 cut(s) | 65, 149 |
| BseDI | CCNNGG | 4 cut(s) | 64, 147, 148, 337 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 23 |
| BseMI | GCAATG | 1 cut(s) | 76 |
| BseRI | GAGGAG | 1 cut(s) | 292 |
| BsiHKAI | GWGCWC | 1 cut(s) | 207 |
| BsiHKCI | CYCGRG | 1 cut(s) | 336 |
| BslFI | GGGAC | 2 cut(s) | 62, 165 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 23 |
| BsmFI | GGGAC | 2 cut(s) | 62, 165 |
| BsoBI | CYCGRG | 1 cut(s) | 336 |
| Bsp1286I | GDGCHC | 1 cut(s) | 207 |
| Bsp1407I | TGTACA | 1 cut(s) | 55 |
| Bsp143I | GATC | 3 cut(s) | 60, 106, 216 |
| BspACI | CCGC | 2 cut(s) | 48, 384 |
| BspPI | GGATC | 2 cut(s) | 55, 114 |
| BspQI | GCTCTTC | 1 cut(s) | 195 |
| BsrDI | GCAATG | 1 cut(s) | 76 |
| BsrGI | TGTACA | 1 cut(s) | 55 |
| BssECI | CCNNGG | 4 cut(s) | 64, 147, 148, 337 |
| BssMI | GATC | 3 cut(s) | 60, 106, 216 |
| Bst2UI | CCWGG | 2 cut(s) | 65, 149 |
| Bst4CI | ACNGT | 1 cut(s) | 238 |
| Bst6I | CTCTTC | 2 cut(s) | 195, 239 |
| BstAUI | TGTACA | 1 cut(s) | 55 |
| BstBAI | YACGTR | 2 cut(s) | 214, 403 |
| BstKTI | GATC | 3 cut(s) | 63, 109, 219 |
| BstMBI | GATC | 3 cut(s) | 60, 106, 216 |
| BstNI | CCWGG | 2 cut(s) | 65, 149 |
| BstSCI | CCNGG | 2 cut(s) | 63, 147 |
| BstV2I | GAAGAC | 1 cut(s) | 357 |
| BstX2I | RGATCY | 2 cut(s) | 60, 106 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 135 |
| BstYI | RGATCY | 2 cut(s) | 60, 106 |
| BtsIMutI | CAGTG | 1 cut(s) | 366 |
| CaiI | CAGNNNCTG | 2 cut(s) | 23, 154 |
| Csp6I | GTAC | 1 cut(s) | 56 |
| CviAII | CATG | 1 cut(s) | 380 |
| CviJI | RGCY | 6 cut(s) | 20, 94, 161, 205, 272, 316 |
| CviKI_1 | RGCY | 6 cut(s) | 20, 94, 161, 205, 272, 316 |
| CviQI | GTAC | 1 cut(s) | 56 |
| DpnI | GATC | 3 cut(s) | 62, 108, 218 |
| DpnII | GATC | 3 cut(s) | 60, 106, 216 |
| Eam1104I | CTCTTC | 2 cut(s) | 195, 239 |
| EarI | CTCTTC | 2 cut(s) | 195, 239 |
| Ecl136II | GAGCTC | 1 cut(s) | 205 |
| Eco24I | GRGCYC | 1 cut(s) | 207 |
| Eco53kI | GAGCTC | 1 cut(s) | 205 |
| Eco72I | CACGTG | 1 cut(s) | 214 |
| Eco88I | CYCGRG | 1 cut(s) | 336 |
| EcoICRI | GAGCTC | 1 cut(s) | 205 |
| EcoRII | CCWGG | 2 cut(s) | 63, 147 |
| EcoT38I | GRGCYC | 1 cut(s) | 207 |
| FaeI | CATG | 1 cut(s) | 383 |
| FaiI | YATR | 8 cut(s) | 46, 136, 183, 285, 346, 353, 381, 400 |
| FaqI | GGGAC | 2 cut(s) | 62, 165 |
| FatI | CATG | 1 cut(s) | 379 |
| FauI | CCCGC | 1 cut(s) | 41 |
| Fnu4HI | GCNGC | 1 cut(s) | 385 |
| FriOI | GRGCYC | 1 cut(s) | 207 |
| Fsp4HI | GCNGC | 1 cut(s) | 385 |
| FspBI | CTAG | 1 cut(s) | 95 |
| GluI | GCNGC | 1 cut(s) | 385 |
| Hin1II | CATG | 1 cut(s) | 383 |
| HincII | GTYRAC | 1 cut(s) | 377 |
| HindII | GTYRAC | 1 cut(s) | 377 |
| HphI | GGTGA | 1 cut(s) | 6 |
| Hpy166II | GTNNAC | 2 cut(s) | 14, 377 |
| Hpy188I | TCNGA | 1 cut(s) | 310 |
| Hpy188III | TCNNGA | 2 cut(s) | 262, 336 |
| Hpy8I | GTNNAC | 2 cut(s) | 14, 377 |
| HpyCH4III | ACNGT | 1 cut(s) | 238 |
| HpyCH4IV | ACGT | 2 cut(s) | 213, 402 |
| HpyCH4V | TGCA | 2 cut(s) | 211, 328 |
| HpySE526I | ACGT | 2 cut(s) | 213, 402 |
| Hsp92II | CATG | 1 cut(s) | 383 |
| Kzo9I | GATC | 3 cut(s) | 60, 106, 216 |
| LguI | GCTCTTC | 1 cut(s) | 195 |
| MaeI | CTAG | 1 cut(s) | 95 |
| MaeII | ACGT | 2 cut(s) | 213, 402 |
| MaeIII | GTNAC | 3 cut(s) | 115, 140, 232 |
| MalI | GATC | 3 cut(s) | 62, 108, 218 |
| MboI | GATC | 3 cut(s) | 60, 106, 216 |
| MboII | GAAGA | 5 cut(s) | 212, 250, 256, 299, 357 |
| MflI | RGATCY | 2 cut(s) | 60, 106 |
| MhlI | GDGCHC | 1 cut(s) | 207 |
| MluCI | AATT | 1 cut(s) | 224 |
| MnlI | CCTC | 4 cut(s) | 182, 270, 273, 332 |
| MslI | CAYNNNNRTG | 1 cut(s) | 133 |
| MspR9I | CCNGG | 2 cut(s) | 65, 149 |
| MvaI | CCWGG | 2 cut(s) | 65, 149 |
| NdeII | GATC | 3 cut(s) | 60, 106, 216 |
| NlaIII | CATG | 1 cut(s) | 383 |
| NmuCI | GTSAC | 1 cut(s) | 140 |
| PasI | CCCWGGG | 1 cut(s) | 148 |
| PciSI | GCTCTTC | 1 cut(s) | 195 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 23 |
| PkrI | GCNGC | 1 cut(s) | 386 |
| PmaCI | CACGTG | 1 cut(s) | 214 |
| PmlI | CACGTG | 1 cut(s) | 214 |
| Ppu21I | YACGTR | 2 cut(s) | 214, 403 |
| Psp124BI | GAGCTC | 1 cut(s) | 207 |
| Psp6I | CCWGG | 2 cut(s) | 63, 147 |
| PspCI | CACGTG | 1 cut(s) | 214 |
| PspGI | CCWGG | 2 cut(s) | 63, 147 |
| PstNI | CAGNNNCTG | 2 cut(s) | 23, 154 |
| PsuI | RGATCY | 2 cut(s) | 60, 106 |
| RsaI | GTAC | 1 cut(s) | 57 |
| RsaNI | GTAC | 1 cut(s) | 56 |
| RseI | CAYNNNNRTG | 1 cut(s) | 133 |
| SacI | GAGCTC | 1 cut(s) | 207 |
| SapI | GCTCTTC | 1 cut(s) | 195 |
| SatI | GCNGC | 1 cut(s) | 385 |
| Sau3AI | GATC | 3 cut(s) | 60, 106, 216 |
| ScrFI | CCNGG | 2 cut(s) | 65, 149 |
| SduI | GDGCHC | 1 cut(s) | 207 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 133 |
| SmlI | CTYRAG | 1 cut(s) | 262 |
| SmoI | CTYRAG | 1 cut(s) | 262 |
| Sse9I | AATT | 1 cut(s) | 224 |
| SsiI | CCGC | 2 cut(s) | 48, 384 |
| SspMI | CTAG | 1 cut(s) | 95 |
| SstI | GAGCTC | 1 cut(s) | 207 |
| StyD4I | CCNGG | 2 cut(s) | 63, 147 |
| TaaI | ACNGT | 1 cut(s) | 238 |
| TaiI | ACGT | 2 cut(s) | 216, 405 |
| TaqI | TCGA | 1 cut(s) | 187 |
| TaqII | GACCGA | 1 cut(s) | 20 |
| TasI | AATT | 1 cut(s) | 224 |
| TatI | WGTACW | 1 cut(s) | 55 |
| TauI | GCSGC | 1 cut(s) | 387 |
| TscAI | CASTG | 1 cut(s) | 366 |
| TseFI | GTSAC | 1 cut(s) | 140 |
| Tsp45I | GTSAC | 1 cut(s) | 140 |
| TspDTI | ATGAA | 1 cut(s) | 300 |
| TspRI | CASTG | 1 cut(s) | 366 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 23 |
| XspI | CTAG | 1 cut(s) | 95 |