AT1G29760

Adipose-regulatory protein, Seipin

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
10422292 .. 10424513
2222 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G29760.1

Sequence Viewer

Length: 1581 bp
ATGGACTCCGAGTCCGAGTCCGAGTCAAACCCTAGCACCACGGACGAATTCGATCGATTCCTCGACGCACCTGACGAATTTTACTACGATTGCTTACCGATTCGTTCCAATTCCCATCAACCTTCGTCTCTCTTACGGCGGCGAAAGTCGGCACATCGCCGGGATTTAATTTCGTCCGATATTGAAACGGAGCCATCTTCTTCTTCCGATGGATTTGATGTCGGTGAGAAATCCAGCTATGTGGAAAAGAACGCTGAGCTTAGAGGGGATATTGATACAAGCGACGTAATTGAATCAACTAAGGACTCAATTGATCTATCTTCAGAAAAGGAGAACGATTTGGATGTAATTAGTTCGTCTGGGAATGATATGGATGTAATTGATTCGGGTCGGAACCGGGTTGACCCGTTTCAGGAAGAATCCACGGTGACTACCGTGAGCAGCGATGATCAAGGAGACGACGACTACGCCGGATCGGTACCACAGTTTCGGGAGCCACCTAATTCCACTGAGTGGTCTCTCCTTGGGTTTTTGGTTGGGCTAGTGATCAAAGCAATCGAATTTCAAGTCAGTTTCATGACAAGCTTACTCACATTTCCTCCATGGCTTCTCCGTAACTGTTTTCTCTTCTTTTTCGATCCCTTTAGCACGATTAGGTTTGGCAGACGCTTTTTAATGGCAAGAGTAGCAGGAATAAGTGATATGATCTTTGGTTATATGAATCCTTTTAGGTTAAAAGATACAAAACAAATGTTGAGTATTGTGTGCAAGTTTGGTTGGGGTATGTTTTGGGCTGTTTATGTAGGCATTGTGTTGTTTGGCTTGTTGGTTTCGTCGCTTATGATTGGTGGTTATGTGATTAACCGTATAGCGGATAAACCATTTGAGGTCAAGGAGACCTTGAATTTTGATTACACCAAGAATAGTCCAGAAGCATATGTGCCCATATCCTCGTGTGCTGGTGTTGAATGTGAGGGAAGTTGCAAGGAAAGTAATGAAATGTCGAAGATCAGGGGTTTGCGAGTTATCCCTCGAGACCAGAAGTTAGATATCATTCTTTCAATGACATTACCTGAGTCTGCGTACAATAAAAATCTCGGCATGTTTCAGGTTCGGGTGGACTTCTTATCTGTGGATGGTCAAACGATTGCTAGTATAAGGCGTCCGTGCATGTTAAGATTCAGAAGTGAGCCTATTCGTCTTGTTCAGACATTCTTCAAAGTGGTTCCGTTAGTGACAGGATATGTCTCTGAGATCCAAACCTTGAGCTTGAAGTTGAAAGGCTTTGTAGAAAAGGACATTCCCACTGCTTGCTTAAAGATAATAATCGAACAACGGGCAGAATTTCGACCCGGAGCAGGTATTCCAGAGCTGTACGATGCATCCCTATCGGTTGAATCCGGTCTTCCCTTCTTCAGAAAAATTATATGGAAATGGCGGAAGACTTTGTTCGTCTGGATCAGCATGAGTTTGTTCATTACGGAATTGCTTTTCACGTTGGTTTGTTGTAGACCTCTTATCATCCCAAGAACACAACCTAGAGACAGATCGCCTTCAAACCCAACTGGAGTCTGGAGGTAG

Protein Analysis

526

Amino Acids

59.68

Weight (kDa)

5.05

Isoelectric Point (pI)

51.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Seipin PF06775 274 - 492 4.4e-52 Putative adipose-regulatory protein (Seipin)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1349
Acc65I GGTACC 1 cut(s) 478
AccB1I GGYRCC 1 cut(s) 478
AccB7I CCANNNNNTGG 1 cut(s) 513
AccI GTMKAC 1 cut(s) 1510
AciI CCGC 3 cut(s) 139, 872, 1438
AclWI GGATC 4 cut(s) 481, 632, 1249, 1466
AcsI RAATTY 5 cut(s) 47, 77, 560, 904, 1343
AcuI CTGAAG 2 cut(s) 306, 1399
AcyI GRCGYC 1 cut(s) 1162
AdeI CACNNNGTG 1 cut(s) 513
AfaI GTAC 3 cut(s) 480, 1085, 1376
AfiI CCNNNNNNNGG 4 cut(s) 412, 513, 871, 1358
AhdI GACNNNNNGTC 1 cut(s) 10
AluBI AGCT 5 cut(s) 237, 259, 585, 1269, 1372
AluI AGCT 5 cut(s) 237, 259, 585, 1269, 1372
Alw26I GTCTC 7 cut(s) 132, 450, 522, 890, 1029, 1252, 1536
AlwI GGATC 4 cut(s) 481, 632, 1249, 1466
Ama87I CYCGRG 1 cut(s) 1032
ApeKI GCWGC 1 cut(s) 441
ApoI RAATTY 5 cut(s) 47, 77, 560, 904, 1343
ArsI GACNNNNNNTTYG 2 cut(s) 552, 584
Asp718I GGTACC 1 cut(s) 478
AsuC2I CCSGG 3 cut(s) 161, 398, 1353
AsuHPI GGTGA 2 cut(s) 236, 439
AvaI CYCGRG 1 cut(s) 1032
BaeGI GKGCMC 1 cut(s) 945
BaeI ACNNNNGTAYC 2 cut(s) 470, 503
BanI GGYRCC 1 cut(s) 478
BauI CACGAG 1 cut(s) 952
BbsI GAAGAC 2 cut(s) 1397, 1448
BbvI GCAGC 1 cut(s) 453
BccI CCATC 4 cut(s) 123, 202, 203, 1130
BceAI ACGGC 1 cut(s) 152
BcgI CGANNNNNNTGC 2 cut(s) 1371, 1405
BclI TGATCA 2 cut(s) 448, 546
BcnI CCSGG 3 cut(s) 161, 398, 1353
BcoDI GTCTC 7 cut(s) 132, 450, 522, 890, 1029, 1252, 1536
BfaI CTAG 4 cut(s) 33, 542, 1152, 1539
BfuAI ACCTGC 1 cut(s) 1349
BisI GCNGC 2 cut(s) 140, 442
BlpI GCTNAGC 1 cut(s) 255
BlsI GCNGC 2 cut(s) 141, 443
Bme1390I CCNGG 3 cut(s) 161, 398, 1353
BmeRI GACNNNNNGTC 1 cut(s) 10
BmeT110I CYCGRG 1 cut(s) 1032
BmiI GGNNCC 5 cut(s) 192, 395, 480, 495, 1227
BmrFI CCNGG 3 cut(s) 161, 398, 1353
BmsI GCATC 2 cut(s) 1369, 1391
BpiI GAAGAC 2 cut(s) 1397, 1448
Bpu1102I GCTNAGC 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 1285
BpuMI CCSGG 3 cut(s) 161, 398, 1353
Bsa29I ATCGAT 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 1325
BsaHI GRCGYC 1 cut(s) 1162
BsaI GGTCTC 3 cut(s) 522, 890, 1029
BsaJI CCNNGG 4 cut(s) 39, 423, 523, 602
BsaWI WCCGGW 1 cut(s) 1400
BsaXI ACNNNNNCTCC 2 cut(s) 583, 613
Bsc4I CCNNNNNNNGG 4 cut(s) 412, 513, 871, 1358
Bse1I ACTGG 1 cut(s) 1570
Bse8I GATNNNNATC 1 cut(s) 1325
BseCI ATCGAT 1 cut(s) 55
BseDI CCNNGG 4 cut(s) 39, 423, 523, 602
BseGI GGATG 5 cut(s) 349, 379, 1141, 1382, 1521
BseJI GATNNNNATC 1 cut(s) 1325
BseLI CCNNNNNNNGG 4 cut(s) 412, 513, 871, 1358
BseMII CTCAG 4 cut(s) 246, 501, 1065, 1242
BseNI ACTGG 1 cut(s) 1570
BseSI GKGCMC 1 cut(s) 945
BseXI GCAGC 1 cut(s) 453
Bsh1285I CGRYCG 1 cut(s) 55
BshNI GGYRCC 1 cut(s) 478
BshVI ATCGAT 1 cut(s) 55
BsiEI CGRYCG 1 cut(s) 55
BsiHKCI CYCGRG 1 cut(s) 1032
BsiSI CCGG 5 cut(s) 160, 397, 471, 1353, 1401
BslI CCNNNNNNNGG 4 cut(s) 412, 513, 871, 1358
BsmAI GTCTC 7 cut(s) 132, 450, 522, 890, 1029, 1252, 1536
BsmBI CGTCTC 2 cut(s) 132, 450
Bso31I GGTCTC 3 cut(s) 522, 890, 1029
BsoBI CYCGRG 1 cut(s) 1032
Bsp1286I GDGCHC 1 cut(s) 945
Bsp1720I GCTNAGC 1 cut(s) 255
Bsp19I CCATGG 1 cut(s) 602
BspACI CCGC 3 cut(s) 139, 872, 1438
BspCNI CTCAG 4 cut(s) 247, 502, 1066, 1243
BspDI ATCGAT 1 cut(s) 55
BspHI TCATGA 1 cut(s) 576
BspLI GGNNCC 5 cut(s) 192, 395, 480, 495, 1227
BspMI ACCTGC 1 cut(s) 1349
BspPI GGATC 4 cut(s) 481, 632, 1249, 1466
BspT107I GGYRCC 1 cut(s) 478
BspTNI GGTCTC 3 cut(s) 522, 890, 1029
BsrI ACTGG 1 cut(s) 1570
BssECI CCNNGG 4 cut(s) 39, 423, 523, 602
BssNI GRCGYC 1 cut(s) 1162
BssSI CACGAG 1 cut(s) 952
BssT1I CCWWGG 2 cut(s) 523, 602
Bst2BI CACGAG 1 cut(s) 952
Bst4CI ACNGT 5 cut(s) 427, 436, 486, 620, 866
Bst6I CTCTTC 1 cut(s) 632
BstACI GRCGYC 1 cut(s) 1162
BstC8I GCNNGC 1 cut(s) 1312
BstDEI CTNAG 6 cut(s) 255, 260, 300, 510, 1074, 1251
BstDSI CCRYGG 3 cut(s) 39, 423, 602
BstF5I GGATG 5 cut(s) 349, 379, 1141, 1382, 1521
BstMAI GTCTC 7 cut(s) 132, 450, 522, 890, 1029, 1252, 1536
BstMCI CGRYCG 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 686
BstNSI RCATGY 2 cut(s) 1105, 1174
BstSCI CCNGG 3 cut(s) 159, 396, 1351
BstSLI GKGCMC 1 cut(s) 945
BstV1I GCAGC 1 cut(s) 453
BstV2I GAAGAC 2 cut(s) 1397, 1448
BstX2I RGATCY 1 cut(s) 1254
BstXI CCANNNNNNTGG 1 cut(s) 241
BstYI RGATCY 1 cut(s) 1254
Bsu15I ATCGAT 1 cut(s) 55
BsuTUI ATCGAT 1 cut(s) 55
BtgI CCRYGG 3 cut(s) 39, 423, 602
BtgZI GCGATG 2 cut(s) 140, 459
BtsCI GGATG 5 cut(s) 349, 379, 1141, 1382, 1521
BtsI GCAGTG 1 cut(s) 1305
BtsIMutI CAGTG 2 cut(s) 507, 1305
BveI ACCTGC 1 cut(s) 1349
Cac8I GCNNGC 1 cut(s) 1312
CciI TCATGA 1 cut(s) 576
ClaI ATCGAT 1 cut(s) 55
CseI GACGC 3 cut(s) 74, 675, 1151
Csp6I GTAC 3 cut(s) 479, 1084, 1375
CviAII CATG 5 cut(s) 577, 603, 1102, 1171, 1465
CviQI GTAC 3 cut(s) 479, 1084, 1375
DdeI CTNAG 6 cut(s) 255, 260, 300, 510, 1074, 1251
DraIII CACNNNGTG 1 cut(s) 513
DriI GACNNNNNGTC 1 cut(s) 10
Eam1104I CTCTTC 1 cut(s) 632
Eam1105I GACNNNNNGTC 1 cut(s) 10
EarI CTCTTC 1 cut(s) 632
EciI GGCGGA 1 cut(s) 1453
Eco130I CCWWGG 2 cut(s) 523, 602
Eco31I GGTCTC 3 cut(s) 522, 890, 1029
Eco32I GATATC 1 cut(s) 1051
Eco57I CTGAAG 2 cut(s) 306, 1399
Eco88I CYCGRG 1 cut(s) 1032
EcoRI GAATTC 1 cut(s) 47
EcoRV GATATC 1 cut(s) 1051
EcoT14I CCWWGG 2 cut(s) 523, 602
EcoT22I ATGCAT 1 cut(s) 1384
ErhI CCWWGG 2 cut(s) 523, 602
Esp3I CGTCTC 2 cut(s) 132, 450
FaeI CATG 5 cut(s) 580, 606, 1105, 1174, 1468
FalI AAGNNNNNCTT 2 cut(s) 884, 916
FatI CATG 5 cut(s) 576, 602, 1101, 1170, 1464
FauNDI CATATG 1 cut(s) 937
FbaI TGATCA 2 cut(s) 448, 546
FblI GTMKAC 1 cut(s) 1510
Fnu4HI GCNGC 2 cut(s) 140, 442
FokI GGATG 5 cut(s) 356, 386, 1148, 1369, 1508
Fsp4HI GCNGC 2 cut(s) 140, 442
FspBI CTAG 4 cut(s) 33, 542, 1152, 1539
GluI GCNGC 2 cut(s) 140, 442
HapII CCGG 5 cut(s) 160, 397, 471, 1353, 1401
HgaI GACGC 3 cut(s) 74, 675, 1151
Hin1I GRCGYC 1 cut(s) 1162
Hin1II CATG 5 cut(s) 580, 606, 1105, 1174, 1468
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HindIII AAGCTT 1 cut(s) 583
HpaII CCGG 5 cut(s) 160, 397, 471, 1353, 1401
HphI GGTGA 2 cut(s) 236, 439
Hpy166II GTNNAC 3 cut(s) 403, 1120, 1511
Hpy188III TCNNGA 8 cut(s) 413, 491, 577, 929, 1034, 1367, 1456, 1573
Hpy8I GTNNAC 3 cut(s) 403, 1120, 1511
Hpy99I CGWCG 4 cut(s) 68, 287, 464, 838
HpyAV CCTTC 3 cut(s) 132, 1420, 1563
HpyCH4III ACNGT 5 cut(s) 427, 436, 486, 620, 866
HpyCH4IV ACGT 2 cut(s) 285, 1496
HpyCH4V TGCA 4 cut(s) 768, 984, 1170, 1382
HpyF10VI GCNNNNNNNGC 1 cut(s) 686
HpyF3I CTNAG 6 cut(s) 255, 260, 300, 510, 1074, 1251
HpySE526I ACGT 2 cut(s) 285, 1496
Hsp92I GRCGYC 1 cut(s) 1162
Hsp92II CATG 5 cut(s) 580, 606, 1105, 1174, 1468
KpnI GGTACC 1 cut(s) 482
Ksp22I TGATCA 2 cut(s) 448, 546
LmnI GCTCC 3 cut(s) 190, 493, 1355
Lsp1109I GCAGC 1 cut(s) 453
LweI GCATC 2 cut(s) 1369, 1391
MaeI CTAG 4 cut(s) 33, 542, 1152, 1539
MaeII ACGT 2 cut(s) 285, 1496
MaeIII GTNAC 3 cut(s) 427, 614, 1234
MfeI CAATTG 1 cut(s) 309
MflI RGATCY 1 cut(s) 1254
MhlI GDGCHC 1 cut(s) 945
MlyI GAGTC 6 cut(s) 20, 26, 32, 299, 1085, 1578
MmeI TCCRAC 1 cut(s) 371
MnlI CCTC 9 cut(s) 71, 257, 609, 880, 961, 967, 1041, 1524, 1569
Mph1103I ATGCAT 1 cut(s) 1384
MseI TTAA 6 cut(s) 167, 674, 734, 861, 1175, 1316
MspI CCGG 5 cut(s) 160, 397, 471, 1353, 1401
MspR9I CCNGG 3 cut(s) 161, 398, 1353
MunI CAATTG 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 686
NciI CCSGG 3 cut(s) 161, 398, 1353
NcoI CCATGG 1 cut(s) 602
NdeI CATATG 1 cut(s) 937
NlaIII CATG 5 cut(s) 580, 606, 1105, 1174, 1468
NlaIV GGNNCC 5 cut(s) 192, 395, 480, 495, 1227
NmeAIII GCCGAG 1 cut(s) 1077
NmuCI GTSAC 2 cut(s) 427, 1234
NsiI ATGCAT 1 cut(s) 1384
NspI RCATGY 2 cut(s) 1105, 1174
PaeR7I CTCGAG 1 cut(s) 1032
PagI TCATGA 1 cut(s) 576
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PfeI GAWTC 8 cut(s) 57, 100, 293, 383, 419, 721, 1179, 1397
PflMI CCANNNNNTGG 1 cut(s) 513
PkrI GCNGC 2 cut(s) 141, 443
Ple19I CGATCG 1 cut(s) 55
PleI GAGTC 6 cut(s) 19, 25, 31, 299, 1084, 1577
PpsI GAGTC 6 cut(s) 19, 25, 31, 299, 1084, 1577
PspN4I GGNNCC 5 cut(s) 192, 395, 480, 495, 1227
PsuI RGATCY 1 cut(s) 1254
PvuI CGATCG 1 cut(s) 55
RsaI GTAC 3 cut(s) 480, 1085, 1376
RsaNI GTAC 3 cut(s) 479, 1084, 1375
SaqAI TTAA 6 cut(s) 167, 674, 734, 861, 1175, 1316
SatI GCNGC 2 cut(s) 140, 442
SchI GAGTC 6 cut(s) 20, 26, 32, 299, 1085, 1578
ScrFI CCNGG 3 cut(s) 161, 398, 1353
SduI GDGCHC 1 cut(s) 945
SfaNI GCATC 2 cut(s) 1369, 1391
Sfr274I CTCGAG 1 cut(s) 1032
SlaI CTCGAG 1 cut(s) 1032
SmlI CTYRAG 2 cut(s) 1032, 1264
SmoI CTYRAG 2 cut(s) 1032, 1264
SsiI CCGC 3 cut(s) 139, 872, 1438
SspMI CTAG 4 cut(s) 33, 542, 1152, 1539
StyD4I CCNGG 3 cut(s) 159, 396, 1351
StyI CCWWGG 2 cut(s) 523, 602
TaaI ACNGT 5 cut(s) 427, 436, 486, 620, 866
TaiI ACGT 2 cut(s) 288, 1499
TaqI TCGA 9 cut(s) 51, 55, 63, 558, 636, 1004, 1033, 1329, 1348
TauI GCSGC 1 cut(s) 142
TfiI GAWTC 8 cut(s) 57, 100, 293, 383, 419, 721, 1179, 1397
Tru1I TTAA 6 cut(s) 167, 674, 734, 861, 1175, 1316
Tru9I TTAA 6 cut(s) 167, 674, 734, 861, 1175, 1316
TscAI CASTG 2 cut(s) 514, 1312
TseFI GTSAC 2 cut(s) 427, 1234
TseI GCWGC 1 cut(s) 441
Tsp45I GTSAC 2 cut(s) 427, 1234
TspDTI ATGAA 4 cut(s) 565, 734, 1011, 1465
TspGWI ACGGA 6 cut(s) 56, 203, 602, 1155, 1218, 1496
TspRI CASTG 2 cut(s) 514, 1312
Van91I CCANNNNNTGG 1 cut(s) 513
XapI RAATTY 5 cut(s) 47, 77, 560, 904, 1343
XceI RCATGY 2 cut(s) 1105, 1174
XcmI CCANNNNNNNNNTGG 1 cut(s) 1569
XhoI CTCGAG 1 cut(s) 1032
XmiI GTMKAC 1 cut(s) 1510
XspI CTAG 4 cut(s) 33, 542, 1152, 1539
Zsp2I ATGCAT 1 cut(s) 1384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.