Rh5BG208200

Adipose-regulatory protein, Seipin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0003222
Physical Location & Seq
Forward (+)
24083362 .. 24083763
402 bp
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UTR
Exon/CDS
Intron
Rh5BG208200.1

Sequence Viewer

Length: 312 bp
ATGACAATGCTGTTGAGATTGTGGAGTGCTACATTTACCAATTTTACTTCAGCTGGGATTCTGGCATCTGGATTTGTGCTAAGTGGGTTTGTGATTAAACACCTGGTTGAGAAGCCTATTAAGACCATAGAGACCCTCAACTTTGATTACACCAAGCCAAGTCCAGTAGCTTTGGTGCCACTCATGTCTTCTAATGTTGGTGTTATACCTTATGGTCACAAATTGAAGATGATTGTTTCGTTGACTGTGCCTGACTCGGAATACAATCACAGACTTGGTGTCTTTCATGTAAGTTCTTCTCATCAACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Seipin

Protein Analysis

103

Amino Acids

11.36

Weight (kDa)

9.46

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Seipin PF06775 20 - 99 5.2e-15 Putative adipose-regulatory protein (Seipin)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 175
AcuI CTGAAG 1 cut(s) 33
AgsI TTSAA 1 cut(s) 226
AhdI GACNNNNNGTC 1 cut(s) 278
AjnI CCWGG 1 cut(s) 102
AluBI AGCT 2 cut(s) 53, 170
AluI AGCT 2 cut(s) 53, 170
Alw26I GTCTC 1 cut(s) 125
BanI GGYRCC 1 cut(s) 175
BbsI GAAGAC 1 cut(s) 180
BciT130I CCWGG 1 cut(s) 104
BcoDI GTCTC 1 cut(s) 125
Bme1390I CCNGG 1 cut(s) 104
BmeRI GACNNNNNGTC 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 1 cut(s) 74
BpiI GAAGAC 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 164
BseBI CCWGG 1 cut(s) 104
BseNI ACTGG 1 cut(s) 164
BseYI CCCAGC 1 cut(s) 53
BshNI GGYRCC 1 cut(s) 175
BsmAI GTCTC 1 cut(s) 125
Bso31I GGTCTC 1 cut(s) 125
BspLI GGNNCC 1 cut(s) 177
BspT107I GGYRCC 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 125
BsrI ACTGG 1 cut(s) 164
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 1 cut(s) 247
BstDEI CTNAG 1 cut(s) 80
BstMAI GTCTC 1 cut(s) 125
BstNI CCWGG 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 102
BstV2I GAAGAC 1 cut(s) 180
CsiI ACCWGGT 1 cut(s) 102
CviAII CATG 2 cut(s) 184, 287
CviJI RGCY 4 cut(s) 53, 115, 157, 170
CviKI_1 RGCY 4 cut(s) 53, 115, 157, 170
DdeI CTNAG 1 cut(s) 80
DriI GACNNNNNGTC 1 cut(s) 278
Eam1105I GACNNNNNGTC 1 cut(s) 278
Eco31I GGTCTC 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 102
FaeI CATG 2 cut(s) 187, 290
FaiI YATR 5 cut(s) 128, 185, 206, 213, 288
FatI CATG 2 cut(s) 183, 286
GsaI CCCAGC 1 cut(s) 57
Hin1II CATG 2 cut(s) 187, 290
HincII GTYRAC 1 cut(s) 243
HindII GTYRAC 1 cut(s) 243
HinfI GANTC 2 cut(s) 58, 254
Hpy166II GTNNAC 1 cut(s) 243
Hpy188I TCNGA 1 cut(s) 259
Hpy188III TCNNGA 1 cut(s) 69
Hpy8I GTNNAC 1 cut(s) 243
HpyCH4III ACNGT 1 cut(s) 247
HpyF3I CTNAG 1 cut(s) 80
Hsp92II CATG 2 cut(s) 187, 290
LpnPI CCDG 7 cut(s) 39, 47, 54, 89, 116, 177, 264
LweI GCATC 1 cut(s) 74
MabI ACCWGGT 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 215
MboII GAAGA 3 cut(s) 180, 238, 288
MluCI AATT 2 cut(s) 40, 221
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 1 cut(s) 146
MseI TTAA 2 cut(s) 96, 120
MspA1I CMGCKG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 104
MvaI CCWGG 1 cut(s) 104
NlaIII CATG 2 cut(s) 187, 290
NlaIV GGNNCC 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 215
PfeI GAWTC 1 cut(s) 58
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
Psp6I CCWGG 1 cut(s) 102
PspFI CCCAGC 1 cut(s) 53
PspGI CCWGG 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 177
PvuII CAGCTG 1 cut(s) 53
SaqAI TTAA 2 cut(s) 96, 120
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 1 cut(s) 104
SetI ASST 5 cut(s) 55, 105, 172, 211, 310
SexAI ACCWGGT 1 cut(s) 102
SfaNI GCATC 1 cut(s) 74
Sse9I AATT 2 cut(s) 40, 221
StyD4I CCNGG 1 cut(s) 102
TaaI ACNGT 1 cut(s) 247
TasI AATT 2 cut(s) 40, 221
TfiI GAWTC 1 cut(s) 58
Tru1I TTAA 2 cut(s) 96, 120
Tru9I TTAA 2 cut(s) 96, 120
TseFI GTSAC 1 cut(s) 215
Tsp45I GTSAC 1 cut(s) 215
TspDTI ATGAA 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.