Rroxscaffold_1G00050020

Putative adipose-regulatory protein (Seipin)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003222
Physical Location & Seq
Reverse (-)
70311928 .. 70313713
1786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00050020.1

Sequence Viewer

Length: 1155 bp
ATGGAGGATTCAAGAATTCTCGAAGCTCATGATCTTTCTCATGATGGCGGCGAAGGGTTCTCGTGGGGTTTTGAACCCGAATGTGATGTTGAATCACAAAGATTGTTCCATGTGCTGAAATGTTATATGCTCAAATTGGCTCTGGATGGGGCTGACAAGGTGTTCAAGGATCATAGAACACTGAATAGTAACATATCTGTACTTCAATGTCGAGCTAGATTTGCTGGTGATCATGGAGGAGAAAGGAGGTCTAGTCTGGATTCAACCCAAGTATTTGAAGAAAATGCTGTTGAAGAAAGAAGAGATGGAGCTATAAGTCCCCCTTCGGAGGGAAACAAACCTGCTAACTCTTTGCTACATCATCAATCGAGCAAAGAGCCAAAGATTGCGTTAATGTATCACAAGTGGTCAATCCATGTGTGTTGCATGCTTTTGGGGATTCTGGCATCTGGATTTGTGCCAAGTGGGTTTGTGATGAAACACCTGGTTGAGAAGCCTATTAAGACCATAGAGACCCTCAACTTTGATTACACCAAGCCAAGTCCAGTAGCTTTGGTGCCACTGATGTCTTCTAATGCTGGTGTTATACCTTATGGTCACAAATTGAAGATGATTGTTTCGTTGACTGTGCCTGACTCGGAATACAATCACAGACTTGGTGTCTTTCAGGTAAGAGTAGAGTTCTTGTCAGCTAATGGTGATGTCACTGCTAGTTCGAGCCATCCATGCATGCTGCAATTCAAAAGCCGACCAATTCAATACATTCAGACCTTTCTGAGAAGTGCTCCTCTTATTGGTGGTTTACAATCAGAAACCCAAGTTCTGAACATCAAAATCAATGAACACGCTGAAGGACTTGAGCCAACTACCCGCTTGAAGGTGATACTGGAACAAAGAGCAGAATTCCACCATGGTGAAGGCATACCTCAAACTTACGCTGGGTCATTACTCCTAGAATCTGAGCTTCCCCAATTGAAAAGATTTGTGTGGTATTGGAGGAGAACAATATTCGTGTGGACAAGCATTGGATCATTTTTGGCAGAGTTGGTGTTCATCCTAGTCTTTTTTAGACCTATGCTTGTCCCAAGAGGGAGACCAGACATGAGTAGGGAGACTAGACGCTCAAATATCATCTTCAGACATAAAAGCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Seipin

Protein Analysis

384

Amino Acids

43.54

Weight (kDa)

8.46

Isoelectric Point (pI)

58.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Seipin PF06775 147 - 342 9.9e-48 Putative adipose-regulatory protein (Seipin)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 349
AccB1I GGYRCC 1 cut(s) 556
AciI CCGC 2 cut(s) 48, 871
AclWI GGATC 2 cut(s) 177, 1036
AcsI RAATTY 2 cut(s) 15, 902
AcuI CTGAAG 2 cut(s) 870, 1120
AfaI GTAC 1 cut(s) 201
AfiI CCNNNNNNNGG 4 cut(s) 328, 329, 794, 877
AhdI GACNNNNNGTC 1 cut(s) 659
AjnI CCWGG 1 cut(s) 483
AleI CACNNNNGTG 1 cut(s) 912
AluBI AGCT 6 cut(s) 26, 215, 311, 551, 692, 964
AluI AGCT 6 cut(s) 26, 215, 311, 551, 692, 964
Alw21I GWGCWC 1 cut(s) 787
Alw26I GTCTC 3 cut(s) 506, 1087, 1106
AlwI GGATC 2 cut(s) 177, 1036
ApeKI GCWGC 1 cut(s) 733
ApoI RAATTY 2 cut(s) 15, 902
AsuHPI GGTGA 4 cut(s) 239, 710, 892, 926
BanI GGYRCC 1 cut(s) 556
BauI CACGAG 1 cut(s) 61
BbsI GAAGAC 1 cut(s) 561
Bbv12I GWGCWC 1 cut(s) 787
BbvI GCAGC 1 cut(s) 720
BccI CCATC 4 cut(s) 38, 140, 299, 729
BciT130I CCWGG 1 cut(s) 485
BclI TGATCA 1 cut(s) 229
BcoDI GTCTC 3 cut(s) 506, 1087, 1106
BfaI CTAG 6 cut(s) 216, 252, 711, 953, 1058, 1116
BfuAI ACCTGC 1 cut(s) 349
BisI GCNGC 2 cut(s) 49, 734
BlsI GCNGC 2 cut(s) 50, 735
Bme1390I CCNGG 1 cut(s) 485
BmeRI GACNNNNNGTC 1 cut(s) 659
BmiI GGNNCC 1 cut(s) 558
BmrFI CCNGG 1 cut(s) 485
BmsI GCATC 1 cut(s) 455
BpiI GAAGAC 1 cut(s) 561
BplI GAGNNNNNCTC 2 cut(s) 769, 801
BpuEI CTTGAG 1 cut(s) 878
BsaI GGTCTC 2 cut(s) 506, 1087
BsaJI CCNNGG 1 cut(s) 910
BsaXI ACNNNNNCTCC 2 cut(s) 238, 268
Bsc4I CCNNNNNNNGG 4 cut(s) 328, 329, 794, 877
Bse1I ACTGG 2 cut(s) 545, 891
BseBI CCWGG 1 cut(s) 485
BseDI CCNNGG 1 cut(s) 910
BseGI GGATG 3 cut(s) 151, 721, 1053
BseLI CCNNNNNNNGG 4 cut(s) 328, 329, 794, 877
BseMII CTCAG 2 cut(s) 767, 951
BseNI ACTGG 2 cut(s) 545, 891
BseRI GAGGAG 3 cut(s) 252, 777, 1012
BseXI GCAGC 1 cut(s) 720
BseYI CCCAGC 1 cut(s) 938
BshNI GGYRCC 1 cut(s) 556
BsiHKAI GWGCWC 1 cut(s) 787
BslFI GGGAC 2 cut(s) 303, 1067
BslI CCNNNNNNNGG 4 cut(s) 328, 329, 794, 877
BsmAI GTCTC 3 cut(s) 506, 1087, 1106
BsmFI GGGAC 2 cut(s) 303, 1067
Bso31I GGTCTC 2 cut(s) 506, 1087
Bsp1286I GDGCHC 1 cut(s) 787
Bsp143I GATC 4 cut(s) 31, 169, 229, 1028
Bsp19I CCATGG 1 cut(s) 910
BspACI CCGC 2 cut(s) 48, 871
BspCNI CTCAG 2 cut(s) 768, 952
BspHI TCATGA 2 cut(s) 28, 40
BspLI GGNNCC 1 cut(s) 558
BspMI ACCTGC 1 cut(s) 349
BspPI GGATC 2 cut(s) 177, 1036
BspT107I GGYRCC 1 cut(s) 556
BspTNI GGTCTC 2 cut(s) 506, 1087
BsrI ACTGG 2 cut(s) 545, 891
BssECI CCNNGG 1 cut(s) 910
BssMI GATC 4 cut(s) 31, 169, 229, 1028
BssSI CACGAG 1 cut(s) 61
BssT1I CCWWGG 1 cut(s) 910
Bst2BI CACGAG 1 cut(s) 61
Bst2UI CCWGG 1 cut(s) 485
Bst4CI ACNGT 1 cut(s) 628
Bst6I CTCTTC 1 cut(s) 295
BstC8I GCNNGC 2 cut(s) 428, 731
BstDEI CTNAG 2 cut(s) 776, 960
BstDSI CCRYGG 1 cut(s) 910
BstF5I GGATG 3 cut(s) 151, 721, 1053
BstKTI GATC 4 cut(s) 34, 172, 232, 1031
BstMAI GTCTC 3 cut(s) 506, 1087, 1106
BstMBI GATC 4 cut(s) 31, 169, 229, 1028
BstMWI GCNNNNNNNGC 2 cut(s) 221, 726
BstNI CCWGG 1 cut(s) 485
BstNSI RCATGY 2 cut(s) 430, 733
BstSCI CCNGG 1 cut(s) 483
BstV1I GCAGC 1 cut(s) 720
BstV2I GAAGAC 1 cut(s) 561
BtgI CCRYGG 1 cut(s) 910
BtsCI GGATG 3 cut(s) 151, 721, 1053
BtsI GCAGTG 1 cut(s) 705
BtsIMutI CAGTG 3 cut(s) 179, 560, 705
BveI ACCTGC 1 cut(s) 349
Cac8I GCNNGC 2 cut(s) 428, 731
CciI TCATGA 2 cut(s) 28, 40
CseI GACGC 1 cut(s) 1128
CsiI ACCWGGT 1 cut(s) 483
Csp6I GTAC 1 cut(s) 200
CviQI GTAC 1 cut(s) 200
DdeI CTNAG 2 cut(s) 776, 960
DpnI GATC 4 cut(s) 33, 171, 231, 1030
DpnII GATC 4 cut(s) 31, 169, 229, 1028
DriI GACNNNNNGTC 1 cut(s) 659
Eam1104I CTCTTC 1 cut(s) 295
Eam1105I GACNNNNNGTC 1 cut(s) 659
EarI CTCTTC 1 cut(s) 295
Eco130I CCWWGG 1 cut(s) 910
Eco31I GGTCTC 2 cut(s) 506, 1087
Eco57I CTGAAG 2 cut(s) 870, 1120
EcoRI GAATTC 2 cut(s) 15, 902
EcoRII CCWGG 1 cut(s) 483
EcoT14I CCWWGG 1 cut(s) 910
EcoT22I ATGCAT 1 cut(s) 731
ErhI CCWWGG 1 cut(s) 910
FalI AAGNNNNNCTT 2 cut(s) 307, 339
FaqI GGGAC 2 cut(s) 303, 1067
FauI CCCGC 1 cut(s) 878
FbaI TGATCA 1 cut(s) 229
Fnu4HI GCNGC 2 cut(s) 49, 734
FokI GGATG 3 cut(s) 158, 708, 1040
Fsp4HI GCNGC 2 cut(s) 49, 734
FspBI CTAG 6 cut(s) 216, 252, 711, 953, 1058, 1116
GluI GCNGC 2 cut(s) 49, 734
GsaI CCCAGC 1 cut(s) 942
HgaI GACGC 1 cut(s) 1128
HincII GTYRAC 1 cut(s) 624
HindII GTYRAC 1 cut(s) 624
HinfI GANTC 6 cut(s) 8, 92, 260, 439, 635, 956
HphI GGTGA 4 cut(s) 239, 710, 892, 926
Hpy166II GTNNAC 3 cut(s) 624, 803, 1017
Hpy188I TCNGA 8 cut(s) 328, 640, 768, 777, 811, 825, 961, 1139
Hpy188III TCNNGA 7 cut(s) 12, 20, 29, 41, 143, 257, 450
Hpy8I GTNNAC 3 cut(s) 624, 803, 1017
HpyAV CCTTC 5 cut(s) 47, 333, 845, 871, 911
HpyCH4III ACNGT 1 cut(s) 628
HpyCH4V TGCA 3 cut(s) 426, 729, 736
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 726
HpyF3I CTNAG 2 cut(s) 776, 960
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 4 cut(s) 31, 169, 229, 1028
LmnI GCTCC 2 cut(s) 308, 790
Lsp1109I GCAGC 1 cut(s) 720
LweI GCATC 1 cut(s) 455
MabI ACCWGGT 1 cut(s) 483
MaeI CTAG 6 cut(s) 216, 252, 711, 953, 1058, 1116
MaeIII GTNAC 3 cut(s) 188, 596, 703
MalI GATC 4 cut(s) 33, 171, 231, 1030
MboI GATC 4 cut(s) 31, 169, 229, 1028
MboII GAAGA 6 cut(s) 290, 305, 312, 561, 619, 1126
MfeI CAATTG 1 cut(s) 971
MhlI GDGCHC 1 cut(s) 787
MluCI AATT 7 cut(s) 15, 134, 602, 737, 753, 902, 971
MlyI GAGTC 1 cut(s) 629
MnlI CCTC 8 cut(s) 230, 240, 322, 527, 798, 936, 990, 1082
Mph1103I ATGCAT 1 cut(s) 731
MseI TTAA 2 cut(s) 392, 501
MslI CAYNNNNRTG 1 cut(s) 912
MspR9I CCNGG 1 cut(s) 485
MunI CAATTG 1 cut(s) 971
MvaI CCWGG 1 cut(s) 485
MwoI GCNNNNNNNGC 2 cut(s) 221, 726
NcoI CCATGG 1 cut(s) 910
NdeII GATC 4 cut(s) 31, 169, 229, 1028
NlaIV GGNNCC 1 cut(s) 558
NmuCI GTSAC 2 cut(s) 596, 703
NsiI ATGCAT 1 cut(s) 731
NspI RCATGY 2 cut(s) 430, 733
OliI CACNNNNGTG 1 cut(s) 912
PaeI GCATGC 2 cut(s) 430, 733
PagI TCATGA 2 cut(s) 28, 40
PfeI GAWTC 5 cut(s) 8, 92, 260, 439, 956
PkrI GCNGC 2 cut(s) 50, 735
PleI GAGTC 1 cut(s) 629
PpsI GAGTC 1 cut(s) 629
Psp6I CCWGG 1 cut(s) 483
PspFI CCCAGC 1 cut(s) 938
PspGI CCWGG 1 cut(s) 483
PspN4I GGNNCC 1 cut(s) 558
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
RseI CAYNNNNRTG 1 cut(s) 912
SaqAI TTAA 2 cut(s) 392, 501
SatI GCNGC 2 cut(s) 49, 734
Sau3AI GATC 4 cut(s) 31, 169, 229, 1028
SchI GAGTC 1 cut(s) 629
ScrFI CCNGG 1 cut(s) 485
SduI GDGCHC 1 cut(s) 787
SexAI ACCWGGT 1 cut(s) 483
SfaNI GCATC 1 cut(s) 455
SmiMI CAYNNNNRTG 1 cut(s) 912
SmlI CTYRAG 1 cut(s) 857
SmoI CTYRAG 1 cut(s) 857
SphI GCATGC 2 cut(s) 430, 733
Sse9I AATT 7 cut(s) 15, 134, 602, 737, 753, 902, 971
SsiI CCGC 2 cut(s) 48, 871
SspI AATATT 1 cut(s) 1008
SspMI CTAG 6 cut(s) 216, 252, 711, 953, 1058, 1116
StyD4I CCNGG 1 cut(s) 483
StyI CCWWGG 1 cut(s) 910
TaaI ACNGT 1 cut(s) 628
TaqI TCGA 4 cut(s) 21, 211, 368, 716
TasI AATT 7 cut(s) 15, 134, 602, 737, 753, 902, 971
TatI WGTACW 1 cut(s) 199
TauI GCSGC 1 cut(s) 51
TfiI GAWTC 5 cut(s) 8, 92, 260, 439, 956
Tru1I TTAA 2 cut(s) 392, 501
Tru9I TTAA 2 cut(s) 392, 501
TscAI CASTG 3 cut(s) 186, 567, 712
TseFI GTSAC 2 cut(s) 596, 703
TseI GCWGC 1 cut(s) 733
Tsp45I GTSAC 2 cut(s) 596, 703
TspDTI ATGAA 3 cut(s) 491, 855, 1042
TspRI CASTG 3 cut(s) 186, 567, 712
XapI RAATTY 2 cut(s) 15, 902
XceI RCATGY 2 cut(s) 430, 733
XspI CTAG 6 cut(s) 216, 252, 711, 953, 1058, 1116
Zsp2I ATGCAT 1 cut(s) 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.