Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003222

Physical Location & Seq

Genomic Coordinates Forward (+)

10315867 .. 10318713

Gene Structure 2847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0116300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGGAACTCTGCAAGGACTCTTTCATGTGGAGCAAGATTGACATGCGAAACGATGGTGAGATTAACTATGACTTGGAGGAGATGTGCCGCCACGCCGTTGATCGGAGCTCCGGTAATCTTGTTGATATTAACATCGAGTATTTCGGCACCGATGAGCTTCTCGAATACATCACTGAAAGTTCGCGTGGAATCAGACGCCTCCGCCTATTATATTGTGATGACATATCTGATGGGGGATTGAGTAAAGTGGCTTCAAAACTTCTGTTGTTGGAGGAACTTGACATTTCTCTATGTCAGAATATCTCGCATAAAGCTGTGGAAATGGTTGGGAGCTCTTGCTCTCTTTTGAAATCATTCAAGTTCAACAAAGAGTGGTGTCAGTTCTCACATGATGGACGTGGACCTTATGAGTTTCATTTCAGTAATCATTATCCACGTATTCTTAAAGCTTACCGGAAAAGAAATCAAGTAACTTTTCATGGGATTTTAGATTACGATGCAGAGGCACTTGCTATAGCAGGAACCATGCATGGTTTACGACACCTCCAGCTTTTTGGGAATAAGTTGACAGATGATGGCTTGAGAAGTATTCTTGATTGTTGTCCTGATCTTGGCTCACTTGATCTGCGCCATTGTTTCATTCTTAATATGGAGGGAGATTTGAGAAGAATATGTGATGAACGAATTGAGAAATTGTGGCTTCCCCATGATTCCACTGAGGGCAAACAATTTGTTGCTAGATCTGAAGCTTATTGCTTTAAATGGACAGAACTCCCAGACCATGTTACAGCGCTGATACTGTCACAGCTGGGAGGGATTGACATCCTCACCTCCGCTCAGAAGCCCTTCTTCTTCCATGAGTTGTGCGAACATGCAATTGAACGTAGCTGTGGTAAGATGGTCGATATCAATGTTGAGAACTTTGGAACCAATGAGCTCCTTAAATATCATATCGCTGAGAGTTCTACTGGACTCAAACGCCTCAGGTTAGTGACTTCTTTTAGAATAACAGATGAAGGATTTCGTGAAGTGGCTTCAAAATTTCCGCTGTTGGAGGACCTTGACCTTTCAATACATGAGGATATCTCACATGAAACTCTAGCATTGGTTGGACGCTCATGCCCTCTTCTGAAATCATTGAAATTTAACAAAAGGTGGTTTGATGAAGGCCGATATAATAACCGGTACAAGCTTGAGCGGAATGACTGTGCACTTGCTATAGCAGGGATGATGCATGGTTTACACCACCTCATGCTTTTTAGGAATACACTGACTAATAAAGGTTTGTGTGCCATTCTTGATGGTTGTCCTCATCTTGAGTCGCTTGATATGCGCCAGTGTTTTAATCTTAGATTGGGAGGAAAGGTGGGAAGAAGATGCGCTGAGCAAATTAAAGAACTGCGGCTTCGCCATGATTCTGTCGATGACATTGACCCATCATATCAATTTTTCTTTGATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Seipin

Protein Analysis

487

Amino Acids

56.13

Weight (kDa)

5.91

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29760 AT2G34380
fragaria_vesca	FvH4_3g07070 FvH4_3g17950 FvH4_3g17960 FvH4_6g08010
malus_domestica	MD00G1007100.v1.1 MD03G1246800.v1.1 MD11G1267400.v1.1
prunus_persica	Prupe.4G068800_v2.0.a1 Prupe.4G068800_v2.0.a1 Prupe.4G158100_v2.0.a1 Prupe.4G158200_v2.0.a1
pyrus_communis	pycom03g19590 pycom05g27230 pycom10g22850
rosa_chinensis	RchiOBHm_Chr5g0012061
rosa_laevigata	RLG00000031882 RLG00000033207 RLG00000033208 RLG00000034416
rosa_multiflora	Rmu_sc0002519.1_g000007 Rmu_sc0003368.1_g000013 Rmu_sc0018966.1_g000004
rosa_roxburghii	Rroxscaffold_1G00050020 Rroxscaffold_1G00064530
rosa_rugosa	Rorug04G0460500 Rorug05G0116300
rosa_samantha	Rh5AG092700 Rh5AG209300 Rh5BG088700 Rh5BG208200 Rh5CG102400 Rh5CG232000 Rh5DG089100
rosa_wichuraiana	Rw5G008100 Rw5G019060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	146
AccBSI	CCGCTC	2 cut(s)	836, 1198
AccII	CGCG	1 cut(s)	184
AciI	CCGC	6 cut(s)	88, 202, 834, 1046, 1198, 1402
AcsI	RAATTY	2 cut(s)	1040, 1142
AcuI	CTGAAG	1 cut(s)	765
AcyI	GRCGYC	1 cut(s)	196
AfaI	GTAC	1 cut(s)	1187
AfeI	AGCGCT	1 cut(s)	792
AfiI	CCNNNNNNNGG	2 cut(s)	102, 611
AgeI	ACCGGT	1 cut(s)	1182
AgsI	TTSAA	8 cut(s)	255, 349, 358, 364, 881, 1038, 1071, 1141
AjiI	CACGTC	1 cut(s)	398
Alw21I	GWGCWC	4 cut(s)	110, 335, 939, 1213
Alw44I	GTGCAC	1 cut(s)	1209
Aor51HI	AGCGCT	1 cut(s)	792
AoxI	GGCC	1 cut(s)	1168
ApaLI	GTGCAC	1 cut(s)	1209
ApoI	RAATTY	2 cut(s)	1040, 1142
AsiGI	ACCGGT	1 cut(s)	1182
Asp700I	GAANNNNTTC	3 cut(s)	353, 845, 1020
AspLEI	GCGC	4 cut(s)	630, 793, 1335, 1382
AspS9I	GGNCC	2 cut(s)	401, 1057
AsuHPI	GGTGA	2 cut(s)	68, 820
AvaII	GGWCC	2 cut(s)	401, 1057
AxyI	CCTNAGG	1 cut(s)	983
BaeGI	GKGCMC	1 cut(s)	1213
BanI	GGYRCC	1 cut(s)	146
BanII	GRGCYC	3 cut(s)	110, 335, 939
BarI	GAAGNNNNNNTAC	2 cut(s)	235, 267
Bbv12I	GWGCWC	4 cut(s)	110, 335, 939, 1213
BccI	CCATC	7 cut(s)	47, 224, 386, 569, 892, 1295, 1444
BceAI	ACGGC	1 cut(s)	80
BclI	TGATCA	1 cut(s)	1456
BfaI	CTAG	2 cut(s)	738, 1100
BfmI	CTRYAG	2 cut(s)	513, 1218
BfoI	RGCGCY	1 cut(s)	794
BglII	AGATCT	1 cut(s)	740
BisI	GCNGC	2 cut(s)	88, 1403
BlpI	GCTNAGC	1 cut(s)	1383
BlsI	GCNGC	2 cut(s)	89, 1404
Bme18I	GGWCC	2 cut(s)	401, 1057
BmgBI	CACGTC	1 cut(s)	398
BmgT120I	GGNCC	2 cut(s)	401, 1057
BmiI	GGNNCC	3 cut(s)	148, 523, 928
BmsI	GCATC	3 cut(s)	487, 1221, 1367
BplI	GAGNNNNNCTC	2 cut(s)	1070, 1102
BpmI	CTGGAG	1 cut(s)	530
Bpu1102I	GCTNAGC	1 cut(s)	1383
BpuEI	CTTGAG	3 cut(s)	601, 1214, 1337
BsaAI	YACGTR	1 cut(s)	437
BsaBI	GATNNNNATC	1 cut(s)	821
BsaHI	GRCGYC	1 cut(s)	196
BsaWI	WCCGGW	3 cut(s)	110, 453, 1182
BsaXI	ACNNNNNCTCC	8 cut(s)	68, 97, 98, 127, 528, 558, 1350, 1380
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 611
Bse118I	RCCGGY	1 cut(s)	1182
Bse1I	ACTGG	2 cut(s)	973, 1336
Bse21I	CCTNAGG	1 cut(s)	983
Bse8I	GATNNNNATC	1 cut(s)	821
BseGI	GGATG	2 cut(s)	822, 1233
BseJI	GATNNNNATC	1 cut(s)	821
BseLI	CCNNNNNNNGG	2 cut(s)	102, 611
BseMII	CTCAG	5 cut(s)	708, 851, 948, 997, 1374
BseNI	ACTGG	2 cut(s)	973, 1336
BseRI	GAGGAG	1 cut(s)	92
BseSI	GKGCMC	1 cut(s)	1213
BseYI	CCCAGC	1 cut(s)	808
Bsh1236I	CGCG	1 cut(s)	184
BshFI	GGCC	1 cut(s)	1170
BshNI	GGYRCC	1 cut(s)	146
BshTI	ACCGGT	1 cut(s)	1182
BsiHKAI	GWGCWC	4 cut(s)	110, 335, 939, 1213
BsiSI	CCGG	3 cut(s)	111, 454, 1183
BslI	CCNNNNNNNGG	2 cut(s)	102, 611
BsnI	GGCC	1 cut(s)	1170
Bsp1286I	GDGCHC	4 cut(s)	110, 335, 939, 1213
Bsp143I	GATC	5 cut(s)	100, 607, 622, 740, 1456
Bsp1720I	GCTNAGC	1 cut(s)	1383
BspACI	CCGC	6 cut(s)	88, 202, 834, 1046, 1198, 1402
BspANI	GGCC	1 cut(s)	1170
BspCNI	CTCAG	5 cut(s)	709, 850, 949, 996, 1375
BspFNI	CGCG	1 cut(s)	184
BspLI	GGNNCC	3 cut(s)	148, 523, 928
BspT107I	GGYRCC	1 cut(s)	146
BsrBI	CCGCTC	2 cut(s)	836, 1198
BsrFI	RCCGGY	1 cut(s)	1182
BsrI	ACTGG	2 cut(s)	973, 1336
BssAI	RCCGGY	1 cut(s)	1182
BssMI	GATC	5 cut(s)	100, 607, 622, 740, 1456
BssNI	GRCGYC	1 cut(s)	196
Bst4CI	ACNGT	2 cut(s)	801, 1208
Bst6I	CTCTTC	1 cut(s)	1131
BstACI	GRCGYC	1 cut(s)	196
BstBAI	YACGTR	1 cut(s)	437
BstDEI	CTNAG	6 cut(s)	717, 837, 957, 983, 1349, 1383
BstF5I	GGATG	2 cut(s)	822, 1233
BstFNI	CGCG	1 cut(s)	184
BstH2I	RGCGCY	1 cut(s)	794
BstHHI	GCGC	4 cut(s)	630, 793, 1335, 1382
BstKTI	GATC	5 cut(s)	103, 610, 625, 743, 1459
BstMBI	GATC	5 cut(s)	100, 607, 622, 740, 1456
BstMWI	GCNNNNNNNGC	1 cut(s)	1330
BstNSI	RCATGY	2 cut(s)	46, 875
BstSFI	CTRYAG	2 cut(s)	513, 1218
BstSLI	GKGCMC	1 cut(s)	1213
BstUI	CGCG	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	740
BstXI	CCANNNNNNTGG	1 cut(s)	554
BstYI	RGATCY	1 cut(s)	740
Bsu36I	CCTNAGG	1 cut(s)	983
BsuRI	GGCC	1 cut(s)	1170
BtrI	CACGTC	1 cut(s)	398
BtsCI	GGATG	2 cut(s)	822, 1233
BtsIMutI	CAGTG	4 cut(s)	171, 714, 1268, 1343
CfoI	GCGC	4 cut(s)	630, 793, 1335, 1382
Cfr10I	RCCGGY	1 cut(s)	1182
Cfr13I	GGNCC	2 cut(s)	401, 1057
CseI	GACGC	2 cut(s)	204, 1122
Csp6I	GTAC	1 cut(s)	1186
CspAI	ACCGGT	1 cut(s)	1182
CviQI	GTAC	1 cut(s)	1186
DdeI	CTNAG	6 cut(s)	717, 837, 957, 983, 1349, 1383
DpnI	GATC	5 cut(s)	102, 609, 624, 742, 1458
DpnII	GATC	5 cut(s)	100, 607, 622, 740, 1456
DraI	TTTAAA	1 cut(s)	760
Eam1104I	CTCTTC	1 cut(s)	1131
EarI	CTCTTC	1 cut(s)	1131
EciI	GGCGGA	1 cut(s)	191
Ecl136II	GAGCTC	3 cut(s)	108, 333, 937
Eco24I	GRGCYC	3 cut(s)	110, 335, 939
Eco32I	GATATC	2 cut(s)	907, 1084
Eco47I	GGWCC	2 cut(s)	401, 1057
Eco47III	AGCGCT	1 cut(s)	792
Eco53kI	GAGCTC	3 cut(s)	108, 333, 937
Eco57I	CTGAAG	1 cut(s)	765
Eco81I	CCTNAGG	1 cut(s)	983
EcoICRI	GAGCTC	3 cut(s)	108, 333, 937
EcoO109I	RGGNCCY	1 cut(s)	1057
EcoRV	GATATC	2 cut(s)	907, 1084
EcoT22I	ATGCAT	2 cut(s)	531, 1236
EcoT38I	GRGCYC	3 cut(s)	110, 335, 939
FalI	AAGNNNNNCTT	2 cut(s)	833, 865
FbaI	TGATCA	1 cut(s)	1456
Fnu4HI	GCNGC	2 cut(s)	88, 1403
FokI	GGATG	2 cut(s)	809, 1240
FriOI	GRGCYC	3 cut(s)	110, 335, 939
Fsp4HI	GCNGC	2 cut(s)	88, 1403
FspBI	CTAG	2 cut(s)	738, 1100
GlaI	GCGC	4 cut(s)	629, 792, 1334, 1381
GluI	GCNGC	2 cut(s)	88, 1403
GsaI	CCCAGC	1 cut(s)	812
GsuI	CTGGAG	1 cut(s)	530
HaeII	RGCGCY	1 cut(s)	794
HaeIII	GGCC	1 cut(s)	1170
HapII	CCGG	3 cut(s)	111, 454, 1183
HgaI	GACGC	2 cut(s)	204, 1122
HhaI	GCGC	4 cut(s)	630, 793, 1335, 1382
Hin1I	GRCGYC	1 cut(s)	196
Hin6I	GCGC	4 cut(s)	628, 791, 1333, 1380
HinP1I	GCGC	4 cut(s)	628, 791, 1333, 1380
HincII	GTYRAC	1 cut(s)	567
HindII	GTYRAC	1 cut(s)	567
HindIII	AAGCTT	3 cut(s)	447, 747, 1190
HinfI	GANTC	6 cut(s)	17, 189, 710, 972, 1319, 1415
HpaII	CCGG	3 cut(s)	111, 454, 1183
HphI	GGTGA	2 cut(s)	68, 820
Hpy166II	GTNNAC	5 cut(s)	401, 536, 567, 1211, 1241
Hpy188I	TCNGA	7 cut(s)	105, 194, 229, 297, 745, 840, 1131
Hpy188III	TCNNGA	6 cut(s)	161, 593, 605, 1025, 1298, 1316
Hpy8I	GTNNAC	5 cut(s)	401, 536, 567, 1211, 1241
HpyAV	CCTTC	3 cut(s)	856, 1010, 1160
HpyCH4III	ACNGT	2 cut(s)	801, 1208
HpyCH4IV	ACGT	3 cut(s)	397, 436, 883
HpyCH4V	TGCA	6 cut(s)	12, 500, 529, 875, 1211, 1234
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1330
HpyF3I	CTNAG	6 cut(s)	717, 837, 957, 983, 1349, 1383
HpySE526I	ACGT	3 cut(s)	397, 436, 883
Hsp92I	GRCGYC	1 cut(s)	196
HspAI	GCGC	4 cut(s)	628, 791, 1333, 1380
Ksp22I	TGATCA	1 cut(s)	1456
Kzo9I	GATC	5 cut(s)	100, 607, 622, 740, 1456
LmnI	GCTCC	5 cut(s)	30, 105, 113, 330, 942
LweI	GCATC	3 cut(s)	487, 1221, 1367
MaeI	CTAG	2 cut(s)	738, 1100
MaeII	ACGT	3 cut(s)	397, 436, 883
MaeIII	GTNAC	4 cut(s)	469, 784, 801, 991
MalI	GATC	5 cut(s)	102, 609, 624, 742, 1458
MbiI	CCGCTC	2 cut(s)	836, 1198
MboI	GATC	5 cut(s)	100, 607, 622, 740, 1456
MboII	GAAGA	6 cut(s)	678, 841, 844, 1118, 1383, 1386
MfeI	CAATTG	1 cut(s)	876
MflI	RGATCY	1 cut(s)	740
MhlI	GDGCHC	4 cut(s)	110, 335, 939, 1213
MluCI	AATT	8 cut(s)	684, 692, 728, 876, 1040, 1142, 1389, 1445
MlyI	GAGTC	3 cut(s)	11, 966, 1328
MmeI	TCCRAC	3 cut(s)	249, 1032, 1090
Mph1103I	ATGCAT	2 cut(s)	531, 1236
MroXI	GAANNNNTTC	3 cut(s)	353, 845, 1020
MseI	TTAA	9 cut(s)	63, 129, 444, 645, 759, 942, 1146, 1344, 1392
MspA1I	CMGCKG	2 cut(s)	808, 1048
MspI	CCGG	3 cut(s)	111, 454, 1183
MunI	CAATTG	1 cut(s)	876
MvnI	CGCG	1 cut(s)	184
MwoI	GCNNNNNNNGC	1 cut(s)	1330
NdeII	GATC	5 cut(s)	100, 607, 622, 740, 1456
NlaIV	GGNNCC	3 cut(s)	148, 523, 928
NmuCI	GTSAC	2 cut(s)	801, 991
NsiI	ATGCAT	2 cut(s)	531, 1236
NspI	RCATGY	2 cut(s)	46, 875
PdmI	GAANNNNTTC	3 cut(s)	353, 845, 1020
PfeI	GAWTC	3 cut(s)	189, 710, 1415
PinAI	ACCGGT	1 cut(s)	1182
PkrI	GCNGC	2 cut(s)	89, 1404
PleI	GAGTC	3 cut(s)	11, 966, 1327
PpsI	GAGTC	3 cut(s)	11, 966, 1327
Ppu21I	YACGTR	1 cut(s)	437
PpuMI	RGGWCCY	1 cut(s)	1057
Psp124BI	GAGCTC	3 cut(s)	110, 335, 939
Psp5II	RGGWCCY	1 cut(s)	1057
PspFI	CCCAGC	1 cut(s)	808
PspN4I	GGNNCC	3 cut(s)	148, 523, 928
PspPI	GGNCC	2 cut(s)	401, 1057
PspPPI	RGGWCCY	1 cut(s)	1057
PsuI	RGATCY	1 cut(s)	740
PvuII	CAGCTG	1 cut(s)	808
RsaI	GTAC	1 cut(s)	1187
RsaNI	GTAC	1 cut(s)	1186
SacI	GAGCTC	3 cut(s)	110, 335, 939
SaqAI	TTAA	9 cut(s)	63, 129, 444, 645, 759, 942, 1146, 1344, 1392
SatI	GCNGC	2 cut(s)	88, 1403
Sau3AI	GATC	5 cut(s)	100, 607, 622, 740, 1456
Sau96I	GGNCC	2 cut(s)	401, 1057
SchI	GAGTC	3 cut(s)	11, 966, 1328
SduI	GDGCHC	4 cut(s)	110, 335, 939, 1213
SfaNI	GCATC	3 cut(s)	487, 1221, 1367
SfcI	CTRYAG	2 cut(s)	513, 1218
SinI	GGWCC	2 cut(s)	401, 1057
SmlI	CTYRAG	3 cut(s)	580, 1193, 1316
SmoI	CTYRAG	3 cut(s)	580, 1193, 1316
Sse9I	AATT	8 cut(s)	684, 692, 728, 876, 1040, 1142, 1389, 1445
SsiI	CCGC	6 cut(s)	88, 202, 834, 1046, 1198, 1402
SspMI	CTAG	2 cut(s)	738, 1100
SstI	GAGCTC	3 cut(s)	110, 335, 939
TaaI	ACNGT	2 cut(s)	801, 1208
TaiI	ACGT	3 cut(s)	400, 439, 886
TaqI	TCGA	4 cut(s)	135, 162, 903, 1422
TasI	AATT	8 cut(s)	684, 692, 728, 876, 1040, 1142, 1389, 1445
TauI	GCSGC	2 cut(s)	90, 1405
TfiI	GAWTC	3 cut(s)	189, 710, 1415
Tru1I	TTAA	9 cut(s)	63, 129, 444, 645, 759, 942, 1146, 1344, 1392
Tru9I	TTAA	9 cut(s)	63, 129, 444, 645, 759, 942, 1146, 1344, 1392
TscAI	CASTG	4 cut(s)	178, 721, 1275, 1343
TseFI	GTSAC	2 cut(s)	801, 991
Tsp45I	GTSAC	2 cut(s)	801, 991
TspDTI	ATGAA	8 cut(s)	13, 404, 467, 628, 693, 1029, 1107, 1179
TspRI	CASTG	4 cut(s)	178, 721, 1275, 1343
VneI	GTGCAC	1 cut(s)	1209
VpaK11BI	GGWCC	2 cut(s)	401, 1057
XapI	RAATTY	2 cut(s)	1040, 1142
XceI	RCATGY	2 cut(s)	46, 875
XmnI	GAANNNNTTC	3 cut(s)	353, 845, 1020
XspI	CTAG	2 cut(s)	738, 1100
Zsp2I	ATGCAT	2 cut(s)	531, 1236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.