Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003222

Physical Location & Seq

Genomic Coordinates Reverse (-)

7701135 .. 7703618

Gene Structure 2484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG088700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGAACAAGATACCCAACTCCCAATCCCAAGCAACGATCAAAACGTCGACGTTTTCTTCGACGCCCTCGACGATTTCCCTCCCTCCTCCGCCGACGACGACGACGACCAACCCGATCAATCCACGTCATCCTCCACCCTCGATGTCCCCGATTCCAAACCCTCTCCGATCTCCCACCTCCGTCTCCGGCCCTCCCGCCGAGAACTCTCCGGCGACGACTCCAAGACCTCCGCTTTACACTCCTCCCAAACCGACCCAATCAACGACGCCAGGCTCAATTACCGAGGCAGAAAGTTCTTACTTCGCCGGAATTTGAAGCCGCCGGAGTCGATTCAGGACCCGGTCGGACCGGTGCCAGCTCCGAGCGACCAGAAAGACGAGGGCTCGACTGTAACTACCGCCGCCGACGATGACCGAGGTGGCGACTCGGCCGACTCGGCCATGCAACTCGGTGACACTTCTTTTAACCCTCTTGTGTTCATAGCTGGATTGATAATCAAAGCAATTGGGCTCCAAATTAATCTGATAATTAGCATTGTGACATTCCCAGCTTGGATTTTGTATAATTCTTACATGCTTTTGGTTGACCCTTTACAAATTGTGGGTAGAGGGAGAGAGTTTTTGAGGGCAAAGTTGGTAAATTTATCGGCATTGGCTGCCGGAGCGGTTAGTCCTTTGGTTGGTGAGTGGGTGAAGGACAAGGACTCGGTTTGGAAGGTGGCATTGCAATTCGGGTGGGGTTTGCTATGGGCGTGTTATGTAGGTTTCTTGTTGTGTGGTCTTTTGGTGTCGTCGCTTGTGTTTAGTGGGGTTTTTATGAGGTACATTGTGGTCGAGCCGCTGCAGATGAAGGAAATGTTGAACTTTGATTACACAAAGCATAGTCCGGTGGCCTATGTGCCGGTGGTGACGTGTGCAGGGGTCGGTTGTGGTGTGGATTGTAAAGAGAAGGTTCATGATGGGGGGATTTTCGGGTATAGGGTCATACCTCCTGGTCACAAATTGGCGGCTAGTGTTAAGTTTGTGTTGCCTGAATCGGAGTACAACAGGAATCTTGGGATCTTTCAGACCTCTAGTTATTCCGAGAGCAAGGCCAAGGGCTGCTTCTGTCAGCACCAGTCCCACTCAAACTCAAAGCAGCCCGCCGGTACGAAACTAGCTGGAAGATGCTGGTATTTATTAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009846 GO:0009856 GO:0009987 GO:0010154 GO:0010162 GO:0010431 GO:0010876 GO:0012505 GO:0016043 GO:0019915 GO:0021700 GO:0022414 GO:0022607 GO:0022611 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0034389 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051235 GO:0051704 GO:0061458 GO:0065007 GO:0065008 GO:0070925 GO:0071695 GO:0071840 GO:0080154 GO:0080155 GO:0140042 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Seipin

Protein Analysis

395

Amino Acids

43.23

Weight (kDa)

5.55

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Seipin	PF06775	260 - 368	3.6e-15	Putative adipose-regulatory protein (Seipin)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29760 AT2G34380
fragaria_vesca	FvH4_3g07070 FvH4_3g17950 FvH4_3g17960 FvH4_6g08010
malus_domestica	MD00G1007100.v1.1 MD03G1246800.v1.1 MD11G1267400.v1.1
prunus_persica	Prupe.4G068800_v2.0.a1 Prupe.4G068800_v2.0.a1 Prupe.4G158100_v2.0.a1 Prupe.4G158200_v2.0.a1
pyrus_communis	pycom03g19590 pycom05g27230 pycom10g22850
rosa_chinensis	RchiOBHm_Chr5g0012061
rosa_laevigata	RLG00000031882 RLG00000033207 RLG00000033208 RLG00000034416
rosa_multiflora	Rmu_sc0002519.1_g000007 Rmu_sc0003368.1_g000013 Rmu_sc0018966.1_g000004
rosa_roxburghii	Rroxscaffold_1G00050020 Rroxscaffold_1G00064530
rosa_rugosa	Rorug04G0460500 Rorug05G0116300
rosa_samantha	Rh5AG092700 Rh5AG209300 Rh5BG088700 Rh5BG208200 Rh5CG102400 Rh5CG232000 Rh5DG089100
rosa_wichuraiana	Rw5G008100 Rw5G019060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	352
AccBSI	CCGCTC	1 cut(s)	665
AccI	GTMKAC	1 cut(s)	48
AclWI	GGATC	1 cut(s)	1067
AcoI	YGGCCR	2 cut(s)	429, 438
AcsI	RAATTY	2 cut(s)	310, 640
AcyI	GRCGYC	2 cut(s)	63, 267
AfaI	GTAC	3 cut(s)	824, 1043, 1150
AfiI	CCNNNNNNNGG	1 cut(s)	680
AflIII	ACRYGT	1 cut(s)	911
AgeI	ACCGGT	1 cut(s)	349
AgsI	TTSAA	2 cut(s)	316, 862
AjiI	CACGTC	2 cut(s)	126, 912
AjnI	CCWGG	2 cut(s)	269, 991
AjuI	GAANNNNNNNTTGG	2 cut(s)	1088, 1120
AluBI	AGCT	4 cut(s)	359, 485, 551, 1160
AluI	AGCT	4 cut(s)	359, 485, 551, 1160
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	1 cut(s)	1067
AoxI	GGCC	5 cut(s)	188, 429, 438, 891, 1092
ApeKI	GCWGC	4 cut(s)	656, 841, 1101, 1138
ApoI	RAATTY	2 cut(s)	310, 640
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
AseI	ATTAAT	1 cut(s)	519
AsiGI	ACCGGT	1 cut(s)	349
AspS9I	GGNCC	3 cut(s)	189, 337, 347
AsuC2I	CCSGG	1 cut(s)	341
AsuHPI	GGTGA	4 cut(s)	464, 695, 703, 919
AvaII	GGWCC	2 cut(s)	337, 347
BanI	GGYRCC	1 cut(s)	352
BanII	GRGCYC	2 cut(s)	386, 513
BbvI	GCAGC	4 cut(s)	643, 828, 1088, 1150
BccI	CCATC	1 cut(s)	953
BciT130I	CCWGG	2 cut(s)	271, 993
BcnI	CCSGG	1 cut(s)	341
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	3 cut(s)	1011, 1074, 1157
BfmI	CTRYAG	1 cut(s)	842
BglI	GCCNNNNNGGC	1 cut(s)	437
BisI	GCNGC	8 cut(s)	320, 402, 657, 839, 842, 1008, 1102, 1139
BlsI	GCNGC	8 cut(s)	321, 403, 658, 840, 843, 1009, 1103, 1140
Bme1390I	CCNGG	3 cut(s)	271, 341, 993
Bme18I	GGWCC	2 cut(s)	337, 347
BmgBI	CACGTC	2 cut(s)	126, 912
BmgT120I	GGNCC	3 cut(s)	189, 337, 347
BmiI	GGNNCC	3 cut(s)	339, 354, 512
BmrFI	CCNGG	3 cut(s)	271, 341, 993
BmsI	GCATC	1 cut(s)	1157
BpuMI	CCSGG	1 cut(s)	341
BsaHI	GRCGYC	2 cut(s)	63, 267
BsaJI	CCNNGG	3 cut(s)	283, 415, 1095
BsaWI	WCCGGW	2 cut(s)	349, 886
Bsc4I	CCNNNNNNNGG	1 cut(s)	680
Bse118I	RCCGGY	3 cut(s)	349, 901, 1145
Bse1I	ACTGG	1 cut(s)	1117
Bse3DI	GCAATG	1 cut(s)	722
BseBI	CCWGG	2 cut(s)	271, 993
BseDI	CCNNGG	3 cut(s)	283, 415, 1095
BseGI	GGATG	1 cut(s)	128
BseLI	CCNNNNNNNGG	1 cut(s)	680
BseMI	GCAATG	1 cut(s)	722
BseNI	ACTGG	1 cut(s)	1117
BseRI	GAGGAG	2 cut(s)	76, 232
BseX3I	CGGCCG	1 cut(s)	429
BseXI	GCAGC	4 cut(s)	643, 828, 1088, 1150
BseYI	CCCAGC	1 cut(s)	547
BsgI	GTGCAG	1 cut(s)	936
Bsh1285I	CGRYCG	2 cut(s)	345, 432
BshFI	GGCC	5 cut(s)	190, 431, 440, 893, 1094
BshNI	GGYRCC	1 cut(s)	352
BshTI	ACCGGT	1 cut(s)	349
BsiEI	CGRYCG	2 cut(s)	345, 432
BslFI	GGGAC	2 cut(s)	131, 1105
BslI	CCNNNNNNNGG	1 cut(s)	680
BsmAI	GTCTC	1 cut(s)	188
BsmBI	CGTCTC	1 cut(s)	188
BsmFI	GGGAC	2 cut(s)	131, 1105
BsnI	GGCC	5 cut(s)	190, 431, 440, 893, 1094
Bsp1286I	GDGCHC	2 cut(s)	386, 513
Bsp143I	GATC	4 cut(s)	37, 115, 168, 1059
BspANI	GGCC	5 cut(s)	190, 431, 440, 893, 1094
BspHI	TCATGA	1 cut(s)	955
BspLI	GGNNCC	3 cut(s)	339, 354, 512
BspMAI	CTGCAG	1 cut(s)	846
BspPI	GGATC	1 cut(s)	1067
BspT107I	GGYRCC	1 cut(s)	352
BsrBI	CCGCTC	1 cut(s)	665
BsrDI	GCAATG	1 cut(s)	722
BsrFI	RCCGGY	3 cut(s)	349, 901, 1145
BsrI	ACTGG	1 cut(s)	1117
BssAI	RCCGGY	3 cut(s)	349, 901, 1145
BssECI	CCNNGG	3 cut(s)	283, 415, 1095
BssMI	GATC	4 cut(s)	37, 115, 168, 1059
BssNI	GRCGYC	2 cut(s)	63, 267
BssT1I	CCWWGG	1 cut(s)	1095
Bst2UI	CCWGG	2 cut(s)	271, 993
Bst4CI	ACNGT	1 cut(s)	391
BstACI	GRCGYC	2 cut(s)	63, 267
BstAPI	GCANNNNNTGC	1 cut(s)	656
BstC8I	GCNNGC	2 cut(s)	357, 1143
BstF5I	GGATG	1 cut(s)	128
BstKTI	GATC	4 cut(s)	40, 118, 171, 1062
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	4 cut(s)	37, 115, 168, 1059
BstMCI	CGRYCG	2 cut(s)	345, 432
BstMWI	GCNNNNNNNGC	3 cut(s)	437, 656, 662
BstNI	CCWGG	2 cut(s)	271, 993
BstNSI	RCATGY	1 cut(s)	577
BstSCI	CCNGG	3 cut(s)	269, 339, 991
BstSFI	CTRYAG	1 cut(s)	842
BstV1I	GCAGC	4 cut(s)	643, 828, 1088, 1150
BstX2I	RGATCY	1 cut(s)	1059
BstYI	RGATCY	1 cut(s)	1059
BstZI	CGGCCG	1 cut(s)	429
BsuRI	GGCC	5 cut(s)	190, 431, 440, 893, 1094
BtrI	CACGTC	2 cut(s)	126, 912
BtsCI	GGATG	1 cut(s)	128
Cac8I	GCNNGC	2 cut(s)	357, 1143
CciI	TCATGA	1 cut(s)	955
Cfr10I	RCCGGY	3 cut(s)	349, 901, 1145
Cfr13I	GGNCC	3 cut(s)	189, 337, 347
CpoI	CGGWCCG	1 cut(s)	347
CseI	GACGC	2 cut(s)	71, 275
Csp6I	GTAC	3 cut(s)	823, 1042, 1149
CspAI	ACCGGT	1 cut(s)	349
CspCI	CAANNNNNGTGG	2 cut(s)	716, 751
CspI	CGGWCCG	1 cut(s)	347
CviAII	CATG	3 cut(s)	442, 574, 956
CviQI	GTAC	3 cut(s)	823, 1042, 1149
DpnI	GATC	4 cut(s)	39, 117, 170, 1061
DpnII	GATC	4 cut(s)	37, 115, 168, 1059
EaeI	YGGCCR	2 cut(s)	429, 438
EagI	CGGCCG	1 cut(s)	429
EciI	GGCGGA	1 cut(s)	79
EclXI	CGGCCG	1 cut(s)	429
Eco130I	CCWWGG	1 cut(s)	1095
Eco24I	GRGCYC	2 cut(s)	386, 513
Eco47I	GGWCC	2 cut(s)	337, 347
Eco52I	CGGCCG	1 cut(s)	429
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRII	CCWGG	2 cut(s)	269, 991
EcoT14I	CCWWGG	1 cut(s)	1095
EcoT38I	GRGCYC	2 cut(s)	386, 513
ErhI	CCWWGG	1 cut(s)	1095
Esp3I	CGTCTC	1 cut(s)	188
FaeI	CATG	3 cut(s)	445, 577, 959
FalI	AAGNNNNNCTT	2 cut(s)	1088, 1120
FaqI	GGGAC	2 cut(s)	131, 1105
FatI	CATG	3 cut(s)	441, 573, 955
FauI	CCCGC	2 cut(s)	203, 1150
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	8 cut(s)	320, 402, 657, 839, 842, 1008, 1102, 1139
FokI	GGATG	1 cut(s)	115
FriOI	GRGCYC	2 cut(s)	386, 513
Fsp4HI	GCNGC	8 cut(s)	320, 402, 657, 839, 842, 1008, 1102, 1139
FspBI	CTAG	3 cut(s)	1011, 1074, 1157
GluI	GCNGC	8 cut(s)	320, 402, 657, 839, 842, 1008, 1102, 1139
GsaI	CCCAGC	1 cut(s)	551
HaeIII	GGCC	5 cut(s)	190, 431, 440, 893, 1094
HgaI	GACGC	2 cut(s)	71, 275
Hin1I	GRCGYC	2 cut(s)	63, 267
Hin1II	CATG	3 cut(s)	445, 577, 959
HincII	GTYRAC	2 cut(s)	49, 586
HindII	GTYRAC	2 cut(s)	49, 586
HinfI	GANTC	9 cut(s)	152, 218, 326, 331, 425, 434, 704, 1034, 1051
HphI	GGTGA	4 cut(s)	464, 695, 703, 919
Hpy166II	GTNNAC	2 cut(s)	49, 586
Hpy188I	TCNGA	7 cut(s)	168, 347, 363, 525, 1039, 1068, 1084
Hpy188III	TCNNGA	2 cut(s)	335, 956
Hpy8I	GTNNAC	2 cut(s)	49, 586
HpyAV	CCTTC	4 cut(s)	688, 709, 844, 943
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	4 cut(s)	45, 51, 125, 911
HpyCH4V	TGCA	4 cut(s)	445, 727, 844, 917
HpyF10VI	GCNNNNNNNGC	3 cut(s)	437, 656, 662
HpySE526I	ACGT	4 cut(s)	45, 51, 125, 911
Hsp92I	GRCGYC	2 cut(s)	63, 267
Hsp92II	CATG	3 cut(s)	445, 577, 959
Kzo9I	GATC	4 cut(s)	37, 115, 168, 1059
LmnI	GCTCC	3 cut(s)	364, 516, 662
Lsp1109I	GCAGC	4 cut(s)	643, 828, 1088, 1150
LweI	GCATC	1 cut(s)	1157
MaeI	CTAG	3 cut(s)	1011, 1074, 1157
MaeII	ACGT	4 cut(s)	45, 51, 125, 911
MaeIII	GTNAC	5 cut(s)	391, 452, 538, 907, 995
MalI	GATC	4 cut(s)	39, 117, 170, 1061
MbiI	CCGCTC	1 cut(s)	665
MboI	GATC	4 cut(s)	37, 115, 168, 1059
MboII	GAAGA	2 cut(s)	49, 1176
MfeI	CAATTG	1 cut(s)	504
MflI	RGATCY	1 cut(s)	1059
MhlI	GDGCHC	2 cut(s)	386, 513
MlyI	GAGTC	5 cut(s)	212, 335, 419, 428, 698
MmeI	TCCRAC	1 cut(s)	325
MseI	TTAA	4 cut(s)	465, 519, 1017, 1181
MspA1I	CMGCKG	1 cut(s)	841
MspR9I	CCNGG	3 cut(s)	271, 341, 993
MunI	CAATTG	1 cut(s)	504
MvaI	CCWGG	2 cut(s)	271, 993
MwoI	GCNNNNNNNGC	3 cut(s)	437, 656, 662
NciI	CCSGG	1 cut(s)	341
NdeII	GATC	4 cut(s)	37, 115, 168, 1059
NlaIII	CATG	3 cut(s)	445, 577, 959
NlaIV	GGNNCC	3 cut(s)	339, 354, 512
NmeAIII	GCCGAG	3 cut(s)	224, 407, 416
NmuCI	GTSAC	4 cut(s)	452, 538, 907, 995
NspI	RCATGY	1 cut(s)	577
PagI	TCATGA	1 cut(s)	955
PcsI	WCGNNNNNNNCGW	7 cut(s)	42, 57, 66, 69, 102, 111, 147
PfeI	GAWTC	4 cut(s)	152, 331, 1034, 1051
PflFI	GACNNNGTC	1 cut(s)	341
PinAI	ACCGGT	1 cut(s)	349
PkrI	GCNGC	8 cut(s)	321, 403, 658, 840, 843, 1009, 1103, 1140
PleI	GAGTC	5 cut(s)	212, 334, 419, 428, 698
PpsI	GAGTC	5 cut(s)	212, 334, 419, 428, 698
PpuMI	RGGWCCY	1 cut(s)	337
PshBI	ATTAAT	1 cut(s)	519
Psp5II	RGGWCCY	1 cut(s)	337
Psp6I	CCWGG	2 cut(s)	269, 991
PspFI	CCCAGC	1 cut(s)	547
PspGI	CCWGG	2 cut(s)	269, 991
PspN4I	GGNNCC	3 cut(s)	339, 354, 512
PspPI	GGNCC	3 cut(s)	189, 337, 347
PspPPI	RGGWCCY	1 cut(s)	337
PsrI	GAACNNNNNNTAC	2 cut(s)	854, 886
PstI	CTGCAG	1 cut(s)	846
PsuI	RGATCY	1 cut(s)	1059
PsyI	GACNNNGTC	1 cut(s)	341
RsaI	GTAC	3 cut(s)	824, 1043, 1150
RsaNI	GTAC	3 cut(s)	823, 1042, 1149
Rsr2I	CGGWCCG	1 cut(s)	347
RsrII	CGGWCCG	1 cut(s)	347
SalI	GTCGAC	1 cut(s)	47
SaqAI	TTAA	4 cut(s)	465, 519, 1017, 1181
SatI	GCNGC	8 cut(s)	320, 402, 657, 839, 842, 1008, 1102, 1139
Sau3AI	GATC	4 cut(s)	37, 115, 168, 1059
Sau96I	GGNCC	3 cut(s)	189, 337, 347
SchI	GAGTC	5 cut(s)	212, 335, 419, 428, 698
ScrFI	CCNGG	3 cut(s)	271, 341, 993
SduI	GDGCHC	2 cut(s)	386, 513
SfaNI	GCATC	1 cut(s)	1157
SfcI	CTRYAG	1 cut(s)	842
SfiI	GGCCNNNNNGGCC	1 cut(s)	437
SgrDI	CGTCGACG	1 cut(s)	47
SinI	GGWCC	2 cut(s)	337, 347
SspMI	CTAG	3 cut(s)	1011, 1074, 1157
StyD4I	CCNGG	3 cut(s)	269, 339, 991
StyI	CCWWGG	1 cut(s)	1095
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	4 cut(s)	48, 54, 128, 914
TaqI	TCGA	7 cut(s)	48, 60, 69, 141, 329, 386, 834
TaqII	GACCGA	1 cut(s)	429
TatI	WGTACW	1 cut(s)	1041
TauI	GCSGC	4 cut(s)	322, 404, 841, 1010
TfiI	GAWTC	4 cut(s)	152, 331, 1034, 1051
Tru1I	TTAA	4 cut(s)	465, 519, 1017, 1181
Tru9I	TTAA	4 cut(s)	465, 519, 1017, 1181
TseFI	GTSAC	4 cut(s)	452, 538, 907, 995
TseI	GCWGC	4 cut(s)	656, 841, 1101, 1138
Tsp45I	GTSAC	4 cut(s)	452, 538, 907, 995
TspDTI	ATGAA	3 cut(s)	469, 863, 944
TspGWI	ACGGA	1 cut(s)	170
Tth111I	GACNNNGTC	1 cut(s)	341
VpaK11BI	GGWCC	2 cut(s)	337, 347
VspI	ATTAAT	1 cut(s)	519
XapI	RAATTY	2 cut(s)	310, 640
XceI	RCATGY	1 cut(s)	577
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	3 cut(s)	1011, 1074, 1157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.