AT2G34380

Adipose-regulatory protein, Seipin

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
14512707 .. 14514516
1810 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G34380.1

Sequence Viewer

Length: 1530 bp
ATGGAATCAGAATCAGAATCATCATCAACACATAGCAGCTGCGATCGATTCCTAGACGCAGAAGACGAATTCTTTTACGATAGCTTCTCGAACCACTACGACTGCCTCAATTCGTCTCCCCCCGCGAATCTCCGTCGCCGAAGGTTGCCTATGGATACGGATTCTTCTTCTTCCTCTTCTACGTCTTCATTGGAATCTTGTGAGAAACGGAGCACCGTGGGAGAAAATGACGAGCTTGAGGTTTCTCTAGTGGATTTCGAAACAATTGAAATTGATGTCGATGTTACTGACTCTGCAAATAGCTCAATCGACTCGATTTCGGAAAAAGGAGAAGACTTTGAAGTAATTGACTCGTGTACCGATACGGAGAAGAATATGGGTGAGAATGATTCGGGTCGGGTCGACCCGTTTACAGTGACCACCTTGAATGATGAGCGAGGTGAGATTTATACCGGACCGGAATATACTTCGACGGATTGGTCTTTGACGAGTCTAGTGATCAGGTCAATTGAATTTCAAGTTAGTTTGATGATTACCTTTATAAGGTTTCCTCCATGGTTAATTAGTAAATGTTTGAGCTTTGTTTTTGATCCGTATCGAACAATGAGGCGTGGTAGACGCTATTTAGTATCGTGGATTGTTGGGTTATGTGATTCAGGGTTAAAAGATGATAAGCCTGTGTTGGAGCTTGTGCGTAGAGTAACATGGGGTTTGTTTTGTGCTGTTTATGTGGGGATCATGTTGTTTGCCTTGTTGGTTTCTGCGTTTATGATTAGTGGTTTTGTGATTACCTATTTGGCTCATGAACCACTTGTTATCAAAGAGAGCTTGAATTTTGATTACACCAAGAGTAGTCCTGAAGCTTATGTGCCCATAAGTTCATGTGCTGGTGTTGCCTTTGGTTTGAGTGGCAAGGAGAGTATTGAAACTGGGAAGGTCAAAGGGTTGAAAGACAGGACAGAGATAACTGTGTCAATGACATTGCCTGAGTCCGAGTACAATAGAAATCTCGGGATGTTTCAGGTTCGGGTGGACTTCTTATCCGCGAGTGGTCATGTGCTTGCTAGTTCAAGGCGGCCGTGTATGGTAAAATTTAGTAGCGAGCCTATACGTCTTGTCCAGACTTTGCTAAAGATTGCTCCGCTTGTCACGGGCTATGTCTCTGAAATCCAAACCTTGAACTTGAAGCTTAAAGGCTTGGTCGAAAAGGACATTATTCCTACTGCTTGCTTGAAGATCATGATCGAACAACGTGCAGAGTTTCGTCCTGGAGCAGGTATTCCTGAGATTTACGATGCATCTCTGTTCCTTGAATCCAAACTTCCTTTCTTGAAAAGGATCATATGGAACTGGAGGAAAACTTTGTTTGTCTGGATCAGCATGAGTTTGTTCATTATGGAATTACTTTTCGCCTTAGTTTTCTTCAGACCTCTGATCATCCCAAGAACAGGTCAGAGAACACAACAAAGAGATGGAACACATTCTATCAACAACAACTTATATCTTGACGGTCAGGCGGGAAGTAGATGA

Protein Analysis

509

Amino Acids

57.41

Weight (kDa)

5.0

Isoelectric Point (pI)

51.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Seipin PF06775 250 - 464 1.3e-51 Putative adipose-regulatory protein (Seipin)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 542
AasI GACNNNNNNGTC 1 cut(s) 478
Acc36I ACCTGC 1 cut(s) 1265
AccI GTMKAC 2 cut(s) 402, 616
AccII CGCG 2 cut(s) 125, 1046
AciI CCGC 5 cut(s) 123, 1044, 1075, 1142, 1517
AclWI GGATC 4 cut(s) 584, 743, 1346, 1382
AcoI YGGCCR 1 cut(s) 1076
AcsI RAATTY 4 cut(s) 68, 512, 832, 1091
AcuI CTGAAG 2 cut(s) 879, 1408
AfaI GTAC 2 cut(s) 358, 998
AfiI CCNNNNNNNGG 3 cut(s) 543, 1274, 1448
AjnI CCWGG 1 cut(s) 1267
AjuI GAANNNNNNNTTGG 2 cut(s) 1310, 1342
AluBI AGCT 9 cut(s) 39, 84, 235, 303, 579, 688, 828, 863, 1189
AluI AGCT 9 cut(s) 39, 84, 235, 303, 579, 688, 828, 863, 1189
Alw21I GWGCWC 1 cut(s) 215
Alw26I GTCTC 2 cut(s) 120, 1165
AlwI GGATC 4 cut(s) 584, 743, 1346, 1382
Ama87I CYCGRG 1 cut(s) 1010
AoxI GGCC 1 cut(s) 1076
ApeKI GCWGC 2 cut(s) 36, 39
ApoI RAATTY 4 cut(s) 68, 512, 832, 1091
Asp700I GAANNNNTTC 1 cut(s) 1480
AspS9I GGNCC 1 cut(s) 455
AsuHPI GGTGA 2 cut(s) 392, 452
AsuII TTCGAA 1 cut(s) 258
AvaI CYCGRG 1 cut(s) 1010
AvaII GGWCC 1 cut(s) 455
BaeGI GKGCMC 1 cut(s) 873
BaeI ACNNNNGTAYC 2 cut(s) 340, 373
BauI CACGAG 1 cut(s) 352
BbsI GAAGAC 3 cut(s) 69, 177, 339
Bbv12I GWGCWC 1 cut(s) 215
BbvI GCAGC 2 cut(s) 26, 48
BccI CCATC 1 cut(s) 1466
BceAI ACGGC 1 cut(s) 1063
BcgI CGANNNNNNTGC 2 cut(s) 1235, 1269
BciT130I CCWGG 1 cut(s) 1269
BciVI GTATCC 1 cut(s) 148
BclI TGATCA 2 cut(s) 498, 1434
BcoDI GTCTC 2 cut(s) 120, 1165
BfaI CTAG 4 cut(s) 53, 248, 494, 1065
BfuAI ACCTGC 1 cut(s) 1265
BfuI GTATCC 1 cut(s) 148
BisI GCNGC 3 cut(s) 37, 40, 1076
BlsI GCNGC 3 cut(s) 38, 41, 1077
Bme1390I CCNGG 1 cut(s) 1269
Bme18I GGWCC 1 cut(s) 455
BmeT110I CYCGRG 1 cut(s) 1010
BmgT120I GGNCC 1 cut(s) 455
BmrFI CCNGG 1 cut(s) 1269
BmrI ACTGGG 1 cut(s) 939
BmsI GCATC 2 cut(s) 1285, 1307
BmuI ACTGGG 1 cut(s) 939
BpiI GAAGAC 3 cut(s) 69, 177, 339
BpmI CTGGAG 2 cut(s) 1290, 1372
Bpu14I TTCGAA 1 cut(s) 258
BpuEI CTTGAG 1 cut(s) 257
Bsa29I ATCGAT 1 cut(s) 46
BsaBI GATNNNNATC 2 cut(s) 594, 1241
BsaJI CCNNGG 2 cut(s) 216, 554
BsaWI WCCGGW 2 cut(s) 452, 457
Bsc4I CCNNNNNNNGG 3 cut(s) 543, 1274, 1448
Bse1I ACTGG 2 cut(s) 934, 1355
Bse3DI GCAATG 1 cut(s) 980
Bse8I GATNNNNATC 2 cut(s) 594, 1241
BseBI CCWGG 1 cut(s) 1269
BseCI ATCGAT 1 cut(s) 46
BseDI CCNNGG 2 cut(s) 216, 554
BseGI GGATG 2 cut(s) 1020, 1437
BseJI GATNNNNATC 2 cut(s) 594, 1241
BseLI CCNNNNNNNGG 3 cut(s) 543, 1274, 1448
BseMI GCAATG 1 cut(s) 980
BseMII CTCAG 2 cut(s) 978, 1275
BseNI ACTGG 2 cut(s) 934, 1355
BseSI GKGCMC 1 cut(s) 873
BseX3I CGGCCG 1 cut(s) 1076
BseXI GCAGC 2 cut(s) 26, 48
BsgI GTGCAG 1 cut(s) 1275
Bsh1236I CGCG 2 cut(s) 125, 1046
Bsh1285I CGRYCG 2 cut(s) 46, 1079
BshFI GGCC 1 cut(s) 1078
BshVI ATCGAT 1 cut(s) 46
BsiEI CGRYCG 2 cut(s) 46, 1079
BsiHKAI GWGCWC 1 cut(s) 215
BsiHKCI CYCGRG 1 cut(s) 1010
BsiSI CCGG 2 cut(s) 453, 458
BslI CCNNNNNNNGG 3 cut(s) 543, 1274, 1448
BsmAI GTCTC 2 cut(s) 120, 1165
BsmBI CGTCTC 1 cut(s) 120
BsnI GGCC 1 cut(s) 1078
BsoBI CYCGRG 1 cut(s) 1010
Bsp119I TTCGAA 1 cut(s) 258
Bsp1286I GDGCHC 2 cut(s) 215, 873
Bsp143I GATC 9 cut(s) 43, 498, 589, 735, 1236, 1242, 1338, 1374, 1434
Bsp19I CCATGG 1 cut(s) 554
BspACI CCGC 5 cut(s) 123, 1044, 1075, 1142, 1517
BspANI GGCC 1 cut(s) 1078
BspCNI CTCAG 2 cut(s) 979, 1276
BspDI ATCGAT 1 cut(s) 46
BspFNI CGCG 2 cut(s) 125, 1046
BspHI TCATGA 2 cut(s) 802, 1239
BspMI ACCTGC 1 cut(s) 1265
BspPI GGATC 4 cut(s) 584, 743, 1346, 1382
BspT104I TTCGAA 1 cut(s) 258
BsrDI GCAATG 1 cut(s) 980
BsrI ACTGG 2 cut(s) 934, 1355
BssECI CCNNGG 2 cut(s) 216, 554
BssMI GATC 9 cut(s) 43, 498, 589, 735, 1236, 1242, 1338, 1374, 1434
BssSI CACGAG 1 cut(s) 352
BssT1I CCWWGG 1 cut(s) 554
Bst2BI CACGAG 1 cut(s) 352
Bst2UI CCWGG 1 cut(s) 1269
Bst4CI ACNGT 4 cut(s) 217, 415, 970, 1511
Bst6I CTCTTC 1 cut(s) 181
BstBI TTCGAA 1 cut(s) 258
BstC8I GCNNGC 3 cut(s) 1062, 1103, 1228
BstDEI CTNAG 3 cut(s) 987, 1284, 1414
BstDSI CCRYGG 2 cut(s) 216, 554
BstENI CCTNNNNNAGG 2 cut(s) 541, 1272
BstF5I GGATG 2 cut(s) 1020, 1437
BstFNI CGCG 2 cut(s) 125, 1046
BstKTI GATC 9 cut(s) 46, 501, 592, 738, 1239, 1245, 1341, 1377, 1437
BstMAI GTCTC 2 cut(s) 120, 1165
BstMBI GATC 9 cut(s) 43, 498, 589, 735, 1236, 1242, 1338, 1374, 1434
BstMCI CGRYCG 2 cut(s) 46, 1079
BstMWI GCNNNNNNNGC 1 cut(s) 893
BstNI CCWGG 1 cut(s) 1269
BstSCI CCNGG 1 cut(s) 1267
BstSLI GKGCMC 1 cut(s) 873
BstUI CGCG 2 cut(s) 125, 1046
BstV1I GCAGC 2 cut(s) 26, 48
BstV2I GAAGAC 3 cut(s) 69, 177, 339
BstZI CGGCCG 1 cut(s) 1076
Bsu15I ATCGAT 1 cut(s) 46
BsuI GTATCC 1 cut(s) 148
BsuRI GGCC 1 cut(s) 1078
BsuTUI ATCGAT 1 cut(s) 46
BtgI CCRYGG 2 cut(s) 216, 554
BtsCI GGATG 2 cut(s) 1020, 1437
BtsIMutI CAGTG 1 cut(s) 420
BveI ACCTGC 1 cut(s) 1265
Cac8I GCNNGC 3 cut(s) 1062, 1103, 1228
CciI TCATGA 2 cut(s) 802, 1239
Cfr13I GGNCC 1 cut(s) 455
ClaI ATCGAT 1 cut(s) 46
CpoI CGGWCCG 1 cut(s) 455
CseI GACGC 2 cut(s) 65, 627
Csp6I GTAC 2 cut(s) 357, 997
CspI CGGWCCG 1 cut(s) 455
CviAII CATG 8 cut(s) 555, 705, 739, 803, 882, 1055, 1240, 1381
CviQI GTAC 2 cut(s) 357, 997
DdeI CTNAG 3 cut(s) 987, 1284, 1414
DpnI GATC 9 cut(s) 45, 500, 591, 737, 1238, 1244, 1340, 1376, 1436
DpnII GATC 9 cut(s) 43, 498, 589, 735, 1236, 1242, 1338, 1374, 1434
DrdI GACNNNNNNGTC 1 cut(s) 478
DseDI GACNNNNNNGTC 1 cut(s) 478
EaeI YGGCCR 1 cut(s) 1076
EagI CGGCCG 1 cut(s) 1076
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
EclXI CGGCCG 1 cut(s) 1076
Eco130I CCWWGG 1 cut(s) 554
Eco47I GGWCC 1 cut(s) 455
Eco52I CGGCCG 1 cut(s) 1076
Eco57I CTGAAG 2 cut(s) 879, 1408
Eco88I CYCGRG 1 cut(s) 1010
EcoNI CCTNNNNNAGG 2 cut(s) 541, 1272
EcoRI GAATTC 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 1267
EcoT14I CCWWGG 1 cut(s) 554
EcoT22I ATGCAT 1 cut(s) 1300
ErhI CCWWGG 1 cut(s) 554
Esp3I CGTCTC 1 cut(s) 120
FaeI CATG 8 cut(s) 558, 708, 742, 806, 885, 1058, 1243, 1384
FatI CATG 8 cut(s) 554, 704, 738, 802, 881, 1054, 1239, 1380
FauI CCCGC 2 cut(s) 130, 1510
FauNDI CATATG 1 cut(s) 1343
FbaI TGATCA 2 cut(s) 498, 1434
FblI GTMKAC 2 cut(s) 402, 616
Fnu4HI GCNGC 3 cut(s) 37, 40, 1076
FokI GGATG 2 cut(s) 1027, 1424
Fsp4HI GCNGC 3 cut(s) 37, 40, 1076
FspBI CTAG 4 cut(s) 53, 248, 494, 1065
GluI GCNGC 3 cut(s) 37, 40, 1076
GsuI CTGGAG 2 cut(s) 1290, 1372
HaeIII GGCC 1 cut(s) 1078
HapII CCGG 2 cut(s) 453, 458
HgaI GACGC 2 cut(s) 65, 627
Hin1II CATG 8 cut(s) 558, 708, 742, 806, 885, 1058, 1243, 1384
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HindIII AAGCTT 2 cut(s) 861, 1187
HpaII CCGG 2 cut(s) 453, 458
HphI GGTGA 2 cut(s) 392, 452
Hpy166II GTNNAC 5 cut(s) 357, 403, 411, 617, 1033
Hpy188I TCNGA 8 cut(s) 10, 16, 322, 994, 1165, 1427, 1434, 1455
Hpy8I GTNNAC 5 cut(s) 357, 403, 411, 617, 1033
Hpy99I CGWCG 2 cut(s) 138, 475
HpyAV CCTTC 2 cut(s) 135, 928
HpyCH4III ACNGT 4 cut(s) 217, 415, 970, 1511
HpyCH4IV ACGT 3 cut(s) 182, 1111, 1252
HpyCH4V TGCA 3 cut(s) 296, 1256, 1298
HpyF10VI GCNNNNNNNGC 1 cut(s) 893
HpyF3I CTNAG 3 cut(s) 987, 1284, 1414
HpySE526I ACGT 3 cut(s) 182, 1111, 1252
Hsp92II CATG 8 cut(s) 558, 708, 742, 806, 885, 1058, 1243, 1384
Ksp22I TGATCA 2 cut(s) 498, 1434
Kzo9I GATC 9 cut(s) 43, 498, 589, 735, 1236, 1242, 1338, 1374, 1434
LmnI GCTCC 4 cut(s) 210, 685, 1144, 1271
Lsp1109I GCAGC 2 cut(s) 26, 48
LweI GCATC 2 cut(s) 1285, 1307
MaeI CTAG 4 cut(s) 53, 248, 494, 1065
MaeII ACGT 3 cut(s) 182, 1111, 1252
MaeIII GTNAC 4 cut(s) 283, 415, 700, 1147
MalI GATC 9 cut(s) 45, 500, 591, 737, 1238, 1244, 1340, 1376, 1436
MboI GATC 9 cut(s) 43, 498, 589, 735, 1236, 1242, 1338, 1374, 1434
MfeI CAATTG 2 cut(s) 264, 507
MhlI GDGCHC 2 cut(s) 215, 873
MlyI GAGTC 5 cut(s) 284, 305, 344, 499, 998
MmeI TCCRAC 1 cut(s) 663
MnlI CCTC 8 cut(s) 116, 184, 232, 431, 561, 600, 1347, 1440
Mph1103I ATGCAT 1 cut(s) 1300
MroXI GAANNNNTTC 1 cut(s) 1480
MseI TTAA 3 cut(s) 560, 662, 1191
MspA1I CMGCKG 1 cut(s) 39
MspI CCGG 2 cut(s) 453, 458
MspR9I CCNGG 1 cut(s) 1269
MunI CAATTG 2 cut(s) 264, 507
MvaI CCWGG 1 cut(s) 1269
MvnI CGCG 2 cut(s) 125, 1046
MwoI GCNNNNNNNGC 1 cut(s) 893
NcoI CCATGG 1 cut(s) 554
NdeI CATATG 1 cut(s) 1343
NdeII GATC 9 cut(s) 43, 498, 589, 735, 1236, 1242, 1338, 1374, 1434
NlaIII CATG 8 cut(s) 558, 708, 742, 806, 885, 1058, 1243, 1384
NmuCI GTSAC 2 cut(s) 415, 1147
NsiI ATGCAT 1 cut(s) 1300
NspV TTCGAA 1 cut(s) 258
PagI TCATGA 2 cut(s) 802, 1239
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 1480
PfoI TCCNGGA 1 cut(s) 1267
PkrI GCNGC 3 cut(s) 38, 41, 1077
Ple19I CGATCG 1 cut(s) 46
PleI GAGTC 5 cut(s) 284, 305, 344, 498, 997
PpsI GAGTC 5 cut(s) 284, 305, 344, 498, 997
PsiI TTATAA 1 cut(s) 542
Psp6I CCWGG 1 cut(s) 1267
PspGI CCWGG 1 cut(s) 1267
PspPI GGNCC 1 cut(s) 455
PvuI CGATCG 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 39
RsaI GTAC 2 cut(s) 358, 998
RsaNI GTAC 2 cut(s) 357, 997
Rsr2I CGGWCCG 1 cut(s) 455
RsrII CGGWCCG 1 cut(s) 455
SalI GTCGAC 1 cut(s) 401
SaqAI TTAA 3 cut(s) 560, 662, 1191
SatI GCNGC 3 cut(s) 37, 40, 1076
Sau3AI GATC 9 cut(s) 43, 498, 589, 735, 1236, 1242, 1338, 1374, 1434
Sau96I GGNCC 1 cut(s) 455
SchI GAGTC 5 cut(s) 284, 305, 344, 499, 998
ScrFI CCNGG 1 cut(s) 1269
SduI GDGCHC 2 cut(s) 215, 873
SfaNI GCATC 2 cut(s) 1285, 1307
SfuI TTCGAA 1 cut(s) 258
SinI GGWCC 1 cut(s) 455
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
SsiI CCGC 5 cut(s) 123, 1044, 1075, 1142, 1517
SspMI CTAG 4 cut(s) 53, 248, 494, 1065
StyD4I CCNGG 1 cut(s) 1267
StyI CCWWGG 1 cut(s) 554
TaaI ACNGT 4 cut(s) 217, 415, 970, 1511
TaiI ACGT 3 cut(s) 185, 1114, 1255
TatI WGTACW 1 cut(s) 996
TauI GCSGC 1 cut(s) 1078
Tru1I TTAA 3 cut(s) 560, 662, 1191
Tru9I TTAA 3 cut(s) 560, 662, 1191
TscAI CASTG 1 cut(s) 420
TseFI GTSAC 2 cut(s) 415, 1147
TseI GCWGC 2 cut(s) 36, 39
Tsp45I GTSAC 2 cut(s) 415, 1147
TspDTI ATGAA 4 cut(s) 177, 819, 870, 1381
TspGWI ACGGA 6 cut(s) 122, 173, 223, 380, 488, 582
TspRI CASTG 1 cut(s) 420
VpaK11BI GGWCC 1 cut(s) 455
XagI CCTNNNNNAGG 2 cut(s) 541, 1272
XapI RAATTY 4 cut(s) 68, 512, 832, 1091
XmiI GTMKAC 2 cut(s) 402, 616
XmnI GAANNNNTTC 1 cut(s) 1480
XspI CTAG 4 cut(s) 53, 248, 494, 1065
Zsp2I ATGCAT 1 cut(s) 1300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.