FvH4_3g17960

Adipose-regulatory protein, Seipin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003222
Physical Location & Seq
Forward (+)
11426942 .. 11428081
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g17960.t1

Sequence Viewer

Length: 807 bp
ATGCTGTTGAGAATGTGGAATGCTACATTCACCACTGTTACTTCAGCTGTATGTGGAGGATTAGAAACCCAAAAGTCACTAGCAGTGAATGTAGGTTTCGCCTTGTTCAAGTCGATCTATGTGTTTTCCATGCTTTTGGGGATTCTGTTATCTGGATTTGTTCTAAGTGGGTTTATGATGAAACACCTGGTTGAGAAGCCTATTAAGACCATAGAGAGCCTCAGCTTCGATTACACCAAGCCAAGTTCAGTAGCTCTTGTGCCACTCAGGTCTTCTAGTGTTGGTGTTATACCTTATGGTCACAAAGTGCAGATGACTGTTTCATTGACTATGCCTGACTCAGAATACAATAACAGACTTGGTGTTTTTCAGGTAAGGGTGGAGTTCTTGTCAGCTAATGGTGATGTCACTGCTAGTTCGAGCCATCCATGCATGCTGCAATTCAAAAGCCTACCAATTCACTACATGCAAACCTTTCTGAGAAGTGCTCCTCTTATTGCTGGTATACAATCAGAAACACAAGTTCTGAACATCAAAATCGATGAGCACACTGAAGGACTTCAGTCAACTGCCTCCTTGAAGGTGATACTGGAACAAAGAGCAGAATTCTACCATGACGGAGGCATACCTCAAATTTATGCTGGATCATTACACCTCCAATCTGAGCCTCCCCAATTGAAAAGACTTGTGTGGTACTGGAGGAGAATTTGTTCGTCTGGACAAGTATTGTGTCATTTTTGGCAGAGTTGGTGTTCATCCTGGCCTTTTTTAGACCTGTGCTTGTCCCAAGAGGGAGACAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Seipin

Protein Analysis

269

Amino Acids

30.02

Weight (kDa)

8.49

Isoelectric Point (pI)

54.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Seipin PF06775 48 - 237 1.6e-45 Putative adipose-regulatory protein (Seipin)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 505
AclWI GGATC 1 cut(s) 652
AcsI RAATTY 3 cut(s) 605, 633, 705
AcuI CTGAAG 3 cut(s) 27, 545, 573
AdeI CACNNNGTG 1 cut(s) 307
AfaI GTAC 1 cut(s) 695
AgsI TTSAA 4 cut(s) 109, 445, 580, 679
AjnI CCWGG 2 cut(s) 186, 758
AloI GAACNNNNNNTCC 2 cut(s) 694, 726
AluBI AGCT 4 cut(s) 47, 225, 254, 395
AluI AGCT 4 cut(s) 47, 225, 254, 395
Alw21I GWGCWC 2 cut(s) 490, 549
Alw26I GTCTC 1 cut(s) 789
AlwI GGATC 1 cut(s) 652
AoxI GGCC 1 cut(s) 761
ApeKI GCWGC 1 cut(s) 436
ApoI RAATTY 3 cut(s) 605, 633, 705
Asp700I GAANNNNTTC 2 cut(s) 558, 709
AsuHPI GGTGA 3 cut(s) 22, 413, 595
BbsI GAAGAC 1 cut(s) 264
Bbv12I GWGCWC 2 cut(s) 490, 549
BbvCI CCTCAGC 1 cut(s) 221
BbvI GCAGC 1 cut(s) 423
BccI CCATC 1 cut(s) 432
BciT130I CCWGG 2 cut(s) 188, 760
BcoDI GTCTC 1 cut(s) 789
BfaI CTAG 3 cut(s) 80, 276, 414
BisI GCNGC 1 cut(s) 437
BlsI GCNGC 1 cut(s) 438
Bme1390I CCNGG 2 cut(s) 188, 760
BmrFI CCNGG 2 cut(s) 188, 760
BoxI GACNNNNGTC 1 cut(s) 562
BpiI GAAGAC 1 cut(s) 264
BplI GAGNNNNNCTC 2 cut(s) 472, 504
BpmI CTGGAG 1 cut(s) 718
Bpu10I CCTNAGC 1 cut(s) 221
Bsa29I ATCGAT 1 cut(s) 540
BsaXI ACNNNNNCTCC 4 cut(s) 374, 404, 694, 724
Bse1I ACTGG 2 cut(s) 594, 701
BseBI CCWGG 2 cut(s) 188, 760
BseCI ATCGAT 1 cut(s) 540
BseGI GGATG 2 cut(s) 424, 755
BseMII CTCAG 5 cut(s) 235, 280, 354, 470, 654
BseNI ACTGG 2 cut(s) 594, 701
BseRI GAGGAG 2 cut(s) 480, 715
BseXI GCAGC 1 cut(s) 423
BsgI GTGCAG 1 cut(s) 329
BshFI GGCC 1 cut(s) 763
BshVI ATCGAT 1 cut(s) 540
BsiHKAI GWGCWC 2 cut(s) 490, 549
BslFI GGGAC 1 cut(s) 769
BsmAI GTCTC 1 cut(s) 789
BsmFI GGGAC 1 cut(s) 769
BsmI GAATGC 1 cut(s) 25
BsnI GGCC 1 cut(s) 763
Bsp1286I GDGCHC 2 cut(s) 490, 549
Bsp143I GATC 2 cut(s) 114, 644
BspANI GGCC 1 cut(s) 763
BspCNI CTCAG 5 cut(s) 234, 279, 353, 471, 655
BspDI ATCGAT 1 cut(s) 540
BspPI GGATC 1 cut(s) 652
BsrI ACTGG 2 cut(s) 594, 701
BssMI GATC 2 cut(s) 114, 644
BssNAI GTATAC 1 cut(s) 506
Bst1107I GTATAC 1 cut(s) 506
Bst2UI CCWGG 2 cut(s) 188, 760
Bst4CI ACNGT 2 cut(s) 37, 319
BstC8I GCNNGC 1 cut(s) 434
BstDEI CTNAG 6 cut(s) 164, 221, 266, 340, 479, 663
BstF5I GGATG 2 cut(s) 424, 755
BstKTI GATC 2 cut(s) 117, 647
BstMAI GTCTC 1 cut(s) 789
BstMBI GATC 2 cut(s) 114, 644
BstMWI GCNNNNNNNGC 1 cut(s) 429
BstNI CCWGG 2 cut(s) 188, 760
BstNSI RCATGY 2 cut(s) 436, 469
BstPAI GACNNNNGTC 1 cut(s) 562
BstSCI CCNGG 2 cut(s) 186, 758
BstV1I GCAGC 1 cut(s) 423
BstV2I GAAGAC 1 cut(s) 264
BstXI CCANNNNNNTGG 1 cut(s) 136
BstZ17I GTATAC 1 cut(s) 506
Bsu15I ATCGAT 1 cut(s) 540
BsuRI GGCC 1 cut(s) 763
BsuTUI ATCGAT 1 cut(s) 540
BtsCI GGATG 2 cut(s) 424, 755
BtsI GCAGTG 2 cut(s) 90, 408
BtsIMutI CAGTG 4 cut(s) 33, 90, 408, 549
Cac8I GCNNGC 1 cut(s) 434
ClaI ATCGAT 1 cut(s) 540
CsiI ACCWGGT 1 cut(s) 186
Csp6I GTAC 1 cut(s) 694
CviAII CATG 5 cut(s) 130, 429, 433, 466, 614
CviQI GTAC 1 cut(s) 694
DdeI CTNAG 6 cut(s) 164, 221, 266, 340, 479, 663
DpnI GATC 2 cut(s) 116, 646
DpnII GATC 2 cut(s) 114, 644
DraIII CACNNNGTG 1 cut(s) 307
Eco57I CTGAAG 3 cut(s) 27, 545, 573
EcoRI GAATTC 1 cut(s) 605
EcoRII CCWGG 2 cut(s) 186, 758
EcoT22I ATGCAT 1 cut(s) 434
FaeI CATG 5 cut(s) 133, 432, 436, 469, 617
FaqI GGGAC 1 cut(s) 769
FatI CATG 5 cut(s) 129, 428, 432, 465, 613
FblI GTMKAC 1 cut(s) 505
Fnu4HI GCNGC 1 cut(s) 437
FokI GGATG 2 cut(s) 411, 742
Fsp4HI GCNGC 1 cut(s) 437
FspBI CTAG 3 cut(s) 80, 276, 414
GluI GCNGC 1 cut(s) 437
GsuI CTGGAG 1 cut(s) 718
HaeIII GGCC 1 cut(s) 763
Hin1II CATG 5 cut(s) 133, 432, 436, 469, 617
HincII GTYRAC 1 cut(s) 567
HindII GTYRAC 1 cut(s) 567
HinfI GANTC 2 cut(s) 142, 338
HphI GGTGA 3 cut(s) 22, 413, 595
Hpy166II GTNNAC 2 cut(s) 506, 567
Hpy188I TCNGA 5 cut(s) 343, 480, 514, 528, 664
Hpy188III TCNNGA 2 cut(s) 153, 717
Hpy8I GTNNAC 2 cut(s) 506, 567
HpyAV CCTTC 2 cut(s) 548, 574
HpyCH4III ACNGT 2 cut(s) 37, 319
HpyCH4V TGCA 4 cut(s) 310, 432, 439, 469
HpyF10VI GCNNNNNNNGC 1 cut(s) 429
HpyF3I CTNAG 6 cut(s) 164, 221, 266, 340, 479, 663
Hsp92II CATG 5 cut(s) 133, 432, 436, 469, 617
Kzo9I GATC 2 cut(s) 114, 644
LmnI GCTCC 1 cut(s) 493
Lsp1109I GCAGC 1 cut(s) 423
MabI ACCWGGT 1 cut(s) 186
MaeI CTAG 3 cut(s) 80, 276, 414
MaeIII GTNAC 4 cut(s) 37, 75, 299, 406
MalI GATC 2 cut(s) 116, 646
MboI GATC 2 cut(s) 114, 644
MboII GAAGA 1 cut(s) 264
MfeI CAATTG 1 cut(s) 674
MhlI GDGCHC 2 cut(s) 490, 549
MluCI AATT 6 cut(s) 440, 456, 605, 633, 674, 705
MlyI GAGTC 1 cut(s) 332
Mph1103I ATGCAT 1 cut(s) 434
MroXI GAANNNNTTC 2 cut(s) 558, 709
MseI TTAA 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 47
MspR9I CCNGG 2 cut(s) 188, 760
MunI CAATTG 1 cut(s) 674
Mva1269I GAATGC 1 cut(s) 25
MvaI CCWGG 2 cut(s) 188, 760
MwoI GCNNNNNNNGC 1 cut(s) 429
NdeII GATC 2 cut(s) 114, 644
NlaIII CATG 5 cut(s) 133, 432, 436, 469, 617
NmuCI GTSAC 3 cut(s) 75, 299, 406
NsiI ATGCAT 1 cut(s) 434
NspI RCATGY 2 cut(s) 436, 469
PaeI GCATGC 1 cut(s) 436
PctI GAATGC 1 cut(s) 25
PdmI GAANNNNTTC 2 cut(s) 558, 709
PfeI GAWTC 1 cut(s) 142
PkrI GCNGC 1 cut(s) 438
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
PshAI GACNNNNGTC 1 cut(s) 562
Psp6I CCWGG 2 cut(s) 186, 758
PspGI CCWGG 2 cut(s) 186, 758
PvuII CAGCTG 1 cut(s) 47
RsaI GTAC 1 cut(s) 695
RsaNI GTAC 1 cut(s) 694
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 1 cut(s) 437
Sau3AI GATC 2 cut(s) 114, 644
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 2 cut(s) 188, 760
SduI GDGCHC 2 cut(s) 490, 549
SexAI ACCWGGT 1 cut(s) 186
SphI GCATGC 1 cut(s) 436
Sse9I AATT 6 cut(s) 440, 456, 605, 633, 674, 705
SspMI CTAG 3 cut(s) 80, 276, 414
StyD4I CCNGG 2 cut(s) 186, 758
TaaI ACNGT 2 cut(s) 37, 319
TaqI TCGA 4 cut(s) 113, 228, 419, 540
TasI AATT 6 cut(s) 440, 456, 605, 633, 674, 705
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 4 cut(s) 40, 90, 415, 556
TseFI GTSAC 3 cut(s) 75, 299, 406
TseI GCWGC 1 cut(s) 436
Tsp45I GTSAC 3 cut(s) 75, 299, 406
TspDTI ATGAA 3 cut(s) 194, 312, 744
TspGWI ACGGA 1 cut(s) 633
TspRI CASTG 4 cut(s) 40, 90, 415, 556
XapI RAATTY 3 cut(s) 605, 633, 705
XceI RCATGY 2 cut(s) 436, 469
XmiI GTMKAC 1 cut(s) 505
XmnI GAANNNNTTC 2 cut(s) 558, 709
XspI CTAG 3 cut(s) 80, 276, 414
Zsp2I ATGCAT 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.