RLG00000033208

Putative adipose-regulatory protein (Seipin)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003222
Physical Location & Seq
Forward (+)
24485725 .. 24486350
626 bp
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UTR
Exon/CDS
Intron
RLM00000033208

Sequence Viewer

Length: 345 bp
ATGTCTTCTAATGTTGGTGTTATACCTTATGGTCACAAATTGAAGATGATTGTTTCGTTGACTGTGCCTGACTCGGAATACAATCACAGACTTGGGGTCTTTCAGGTAAGAGTAGAGTTCTTGTCAGCTAATGGTGATGTCACTGCTAGTTCGAGCCATCCATGCATGCTGCAAATCAAAAGCCGACCAATTCAATACATTCAGACCTTTCTGAGAAGTGCTCTTCTTATTGCTGGTTTACAATCAGAAACCCAAGTTCTGAACATCAAAATCAATGAACACGCTGAAGCCAACTACCCGCTTGAAGGTGATACTGGAACAAAGAGCAGAATTCCACCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Seipin

Protein Analysis

115

Amino Acids

12.65

Weight (kDa)

7.93

Isoelectric Point (pI)

44.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Seipin PF06775 7 - 97 2e-26 Putative adipose-regulatory protein (Seipin)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 299
AcsI RAATTY 1 cut(s) 330
AcuI CTGAAG 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 305
AgsI TTSAA 3 cut(s) 43, 194, 305
AhdI GACNNNNNGTC 1 cut(s) 95
AleI CACNNNNGTG 1 cut(s) 340
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
Alw21I GWGCWC 1 cut(s) 223
ApeKI GCWGC 1 cut(s) 169
ApoI RAATTY 1 cut(s) 330
AsuHPI GGTGA 2 cut(s) 146, 320
Bbv12I GWGCWC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 156
BccI CCATC 1 cut(s) 165
BfaI CTAG 1 cut(s) 147
BisI GCNGC 1 cut(s) 170
BlsI GCNGC 1 cut(s) 171
BmeRI GACNNNNNGTC 1 cut(s) 95
BplI GAGNNNNNCTC 2 cut(s) 205, 237
BsaJI CCNNGG 1 cut(s) 338
Bsc4I CCNNNNNNNGG 1 cut(s) 305
Bse1I ACTGG 1 cut(s) 319
BseDI CCNNGG 1 cut(s) 338
BseGI GGATG 1 cut(s) 157
BseLI CCNNNNNNNGG 1 cut(s) 305
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 1 cut(s) 319
BseXI GCAGC 1 cut(s) 156
BsiHKAI GWGCWC 1 cut(s) 223
BslI CCNNNNNNNGG 1 cut(s) 305
Bsp1286I GDGCHC 1 cut(s) 223
Bsp19I CCATGG 1 cut(s) 338
BspACI CCGC 1 cut(s) 299
BspCNI CTCAG 1 cut(s) 204
BspQI GCTCTTC 1 cut(s) 228
BsrI ACTGG 1 cut(s) 319
BssECI CCNNGG 1 cut(s) 338
BssT1I CCWWGG 1 cut(s) 338
Bst4CI ACNGT 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 212
BstDSI CCRYGG 1 cut(s) 338
BstF5I GGATG 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstNSI RCATGY 1 cut(s) 169
BstV1I GCAGC 1 cut(s) 156
BtgI CCRYGG 1 cut(s) 338
BtsCI GGATG 1 cut(s) 157
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 167
CviAII CATG 3 cut(s) 162, 166, 339
CviJI RGCY 4 cut(s) 128, 156, 183, 290
CviKI_1 RGCY 4 cut(s) 128, 156, 183, 290
DdeI CTNAG 1 cut(s) 212
DriI GACNNNNNGTC 1 cut(s) 95
Eam1104I CTCTTC 1 cut(s) 228
Eam1105I GACNNNNNGTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 338
Eco57I CTGAAG 1 cut(s) 306
EcoRI GAATTC 1 cut(s) 330
EcoT14I CCWWGG 1 cut(s) 338
EcoT22I ATGCAT 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 338
FaeI CATG 3 cut(s) 165, 169, 342
FaiI YATR 5 cut(s) 23, 30, 163, 167, 340
FatI CATG 3 cut(s) 161, 165, 338
FauI CCCGC 1 cut(s) 306
Fnu4HI GCNGC 1 cut(s) 170
FokI GGATG 1 cut(s) 144
Fsp4HI GCNGC 1 cut(s) 170
FspBI CTAG 1 cut(s) 147
GluI GCNGC 1 cut(s) 170
Hin1II CATG 3 cut(s) 165, 169, 342
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HinfI GANTC 1 cut(s) 71
HphI GGTGA 2 cut(s) 146, 320
Hpy166II GTNNAC 2 cut(s) 60, 239
Hpy188I TCNGA 5 cut(s) 76, 204, 213, 247, 261
Hpy8I GTNNAC 2 cut(s) 60, 239
HpyAV CCTTC 1 cut(s) 299
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4V TGCA 2 cut(s) 165, 172
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 1 cut(s) 212
Hsp92II CATG 3 cut(s) 165, 169, 342
LguI GCTCTTC 1 cut(s) 228
LpnPI CCDG 4 cut(s) 81, 89, 219, 300
Lsp1109I GCAGC 1 cut(s) 156
MaeI CTAG 1 cut(s) 147
MaeIII GTNAC 2 cut(s) 32, 139
MboII GAAGA 2 cut(s) 55, 215
MhlI GDGCHC 1 cut(s) 223
MluCI AATT 3 cut(s) 38, 189, 330
MlyI GAGTC 1 cut(s) 65
Mph1103I ATGCAT 1 cut(s) 167
MslI CAYNNNNRTG 1 cut(s) 340
MwoI GCNNNNNNNGC 1 cut(s) 162
NcoI CCATGG 1 cut(s) 338
NlaIII CATG 3 cut(s) 165, 169, 342
NmuCI GTSAC 2 cut(s) 32, 139
NsiI ATGCAT 1 cut(s) 167
NspI RCATGY 1 cut(s) 169
OliI CACNNNNGTG 1 cut(s) 340
PaeI GCATGC 1 cut(s) 169
PciSI GCTCTTC 1 cut(s) 228
PkrI GCNGC 1 cut(s) 171
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
RseI CAYNNNNRTG 1 cut(s) 340
SapI GCTCTTC 1 cut(s) 228
SatI GCNGC 1 cut(s) 170
SchI GAGTC 1 cut(s) 65
SduI GDGCHC 1 cut(s) 223
SetI ASST 5 cut(s) 28, 108, 130, 209, 310
SmiMI CAYNNNNRTG 1 cut(s) 340
SphI GCATGC 1 cut(s) 169
Sse9I AATT 3 cut(s) 38, 189, 330
SsiI CCGC 1 cut(s) 299
SspMI CTAG 1 cut(s) 147
StyI CCWWGG 1 cut(s) 338
TaaI ACNGT 1 cut(s) 64
TaqI TCGA 1 cut(s) 152
TasI AATT 3 cut(s) 38, 189, 330
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 2 cut(s) 32, 139
TseI GCWGC 1 cut(s) 169
Tsp45I GTSAC 2 cut(s) 32, 139
TspDTI ATGAA 1 cut(s) 291
TspRI CASTG 1 cut(s) 148
XapI RAATTY 1 cut(s) 330
XceI RCATGY 1 cut(s) 169
XspI CTAG 1 cut(s) 147
Zsp2I ATGCAT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.