Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002519.1

Orthogroup ID

OG0003222

Physical Location & Seq

Genomic Coordinates Reverse (-)

25679 .. 26635

Gene Structure 957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002519.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

atggaacaagatacccaactcccaatcccaagcaaccaccaaaacgtcgacgttttcttcgacgccctcgacgatttccctccctcctccgccgacgccgacgaccaacccgatcaatccacgtcatcctccaccctcgatggccccgattccaaaccctctccgacctcccacctccgtctccggccctcccgccgagaactctccggcgacgactccaagacctccactttacaatcctcccaaaccgacccaatcaacgacgccaggctcaattaccgaggcagaaagctcagacttcgccggaatttgaggccgccggagtcgattcaggacccggtcgaaccggtgccagctccgagcgaccagaaagacgagggctcgactgtaactaccgccgccgacgatgaccgaggcggtgactcggccgactcggccatgcaactcggtgacacttcttttaaccctcttgtgttcgtagctggattgataatcaaagcaattgggctccaaattaatctgataattagcattgtaacgttcccagcttggattttgtataattcttacatgcttttggttgaccctttacaaattgtgggtagagggagagagttttttagggcaaagttggtaaatttatcggcattggctgccggagcggttagtcctttggttggtgagtgggtgaaggacaaggactcggtttggaaggtggcattgcgattcgggtggggtttggtttgggcgttttatgtaggttttttgttgtgtggtcttttggtgtcgtcgcttgtgtttagtggggtttttatgaggtacattgtggtcgagccgctgcagatggaggaaatgttgaaccttgattacacaaagtatagtccagtggcctatgtgccggtggtgtcgtgtgcaggggtcggttgtggtgtggattgtaaagaaaacacactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006996 GO:0007275 GO:0008150 GO:0009791 GO:0009846 GO:0009856 GO:0009987 GO:0010154 GO:0010162 GO:0010431 GO:0010876 GO:0012505 GO:0016043 GO:0019915 GO:0021700 GO:0022414 GO:0022607 GO:0022611 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0034389 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051235 GO:0051704 GO:0061458 GO:0065007 GO:0065008 GO:0070925 GO:0071695 GO:0071840 GO:0080154 GO:0080155 GO:0140042 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Seipin

Protein Analysis

318

Amino Acids

34.82

Weight (kDa)

4.65

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29760 AT2G34380
fragaria_vesca	FvH4_3g07070 FvH4_3g17950 FvH4_3g17960 FvH4_6g08010
malus_domestica	MD00G1007100.v1.1 MD03G1246800.v1.1 MD11G1267400.v1.1
prunus_persica	Prupe.4G068800_v2.0.a1 Prupe.4G068800_v2.0.a1 Prupe.4G158100_v2.0.a1 Prupe.4G158200_v2.0.a1
pyrus_communis	pycom03g19590 pycom05g27230 pycom10g22850
rosa_chinensis	RchiOBHm_Chr5g0012061
rosa_laevigata	RLG00000031882 RLG00000033207 RLG00000033208 RLG00000034416
rosa_multiflora	Rmu_sc0002519.1_g000007 Rmu_sc0003368.1_g000013 Rmu_sc0018966.1_g000004
rosa_roxburghii	Rroxscaffold_1G00050020 Rroxscaffold_1G00064530
rosa_rugosa	Rorug04G0460500 Rorug05G0116300
rosa_samantha	Rh5AG092700 Rh5AG209300 Rh5BG088700 Rh5BG208200 Rh5CG102400 Rh5CG232000 Rh5DG089100
rosa_wichuraiana	Rw5G008100 Rw5G019060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	349
AccBSI	CCGCTC	1 cut(s)	662
AccI	GTMKAC	1 cut(s)	48
AciI	CCGC	8 cut(s)	90, 193, 317, 396, 399, 417, 662, 836
AclI	AACGTT	1 cut(s)	539
AcoI	YGGCCR	2 cut(s)	426, 435
AcsI	RAATTY	2 cut(s)	307, 637
AcyI	GRCGYC	3 cut(s)	63, 96, 264
AfaI	GTAC	1 cut(s)	821
AfiI	CCNNNNNNNGG	1 cut(s)	677
AgeI	ACCGGT	1 cut(s)	346
AgsI	TTSAA	1 cut(s)	859
AjiI	CACGTC	1 cut(s)	123
AjnI	CCWGG	1 cut(s)	266
AluBI	AGCT	4 cut(s)	292, 356, 482, 548
AluI	AGCT	4 cut(s)	292, 356, 482, 548
Alw26I	GTCTC	1 cut(s)	185
AoxI	GGCC	6 cut(s)	142, 185, 314, 426, 435, 888
ApeKI	GCWGC	2 cut(s)	653, 838
ApoI	RAATTY	2 cut(s)	307, 637
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
AseI	ATTAAT	1 cut(s)	516
AsiGI	ACCGGT	1 cut(s)	346
AspS9I	GGNCC	3 cut(s)	143, 186, 334
AsuC2I	CCSGG	1 cut(s)	338
AsuHPI	GGTGA	4 cut(s)	431, 461, 692, 700
AvaII	GGWCC	1 cut(s)	334
BanI	GGYRCC	1 cut(s)	349
BanII	GRGCYC	2 cut(s)	383, 510
BbvI	GCAGC	2 cut(s)	640, 825
BccI	CCATC	2 cut(s)	134, 838
BciT130I	CCWGG	1 cut(s)	268
BcnI	CCSGG	1 cut(s)	338
BcoDI	GTCTC	1 cut(s)	185
BfmI	CTRYAG	1 cut(s)	839
BglI	GCCNNNNNGGC	1 cut(s)	434
BisI	GCNGC	5 cut(s)	317, 399, 654, 836, 839
BlsI	GCNGC	5 cut(s)	318, 400, 655, 837, 840
Bme1390I	CCNGG	2 cut(s)	268, 338
Bme18I	GGWCC	1 cut(s)	334
BmgBI	CACGTC	1 cut(s)	123
BmgT120I	GGNCC	3 cut(s)	143, 186, 334
BmiI	GGNNCC	4 cut(s)	145, 336, 351, 509
BmrFI	CCNGG	2 cut(s)	268, 338
BpuMI	CCSGG	1 cut(s)	338
BsaHI	GRCGYC	3 cut(s)	63, 96, 264
BsaJI	CCNNGG	2 cut(s)	280, 412
BsaWI	WCCGGW	1 cut(s)	346
BsaXI	ACNNNNNCTCC	2 cut(s)	839, 869
Bsc4I	CCNNNNNNNGG	1 cut(s)	677
Bse118I	RCCGGY	2 cut(s)	346, 898
Bse1I	ACTGG	1 cut(s)	884
Bse3DI	GCAATG	1 cut(s)	719
BseBI	CCWGG	1 cut(s)	268
BseDI	CCNNGG	2 cut(s)	280, 412
BseGI	GGATG	1 cut(s)	125
BseLI	CCNNNNNNNGG	1 cut(s)	677
BseMI	GCAATG	1 cut(s)	719
BseMII	CTCAG	1 cut(s)	307
BseNI	ACTGG	1 cut(s)	884
BseRI	GAGGAG	1 cut(s)	76
BseX3I	CGGCCG	1 cut(s)	426
BseXI	GCAGC	2 cut(s)	640, 825
BseYI	CCCAGC	1 cut(s)	544
BsgI	GTGCAG	1 cut(s)	933
Bsh1285I	CGRYCG	2 cut(s)	342, 429
BshFI	GGCC	6 cut(s)	144, 187, 316, 428, 437, 890
BshNI	GGYRCC	1 cut(s)	349
BshTI	ACCGGT	1 cut(s)	346
BsiEI	CGRYCG	2 cut(s)	342, 429
BsiSI	CCGG	8 cut(s)	184, 207, 304, 320, 338, 347, 657, 899
BslI	CCNNNNNNNGG	1 cut(s)	677
BsmAI	GTCTC	1 cut(s)	185
BsmBI	CGTCTC	1 cut(s)	185
BsnI	GGCC	6 cut(s)	144, 187, 316, 428, 437, 890
Bsp1286I	GDGCHC	2 cut(s)	383, 510
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	8 cut(s)	90, 193, 317, 396, 399, 417, 662, 836
BspANI	GGCC	6 cut(s)	144, 187, 316, 428, 437, 890
BspCNI	CTCAG	1 cut(s)	306
BspLI	GGNNCC	4 cut(s)	145, 336, 351, 509
BspMAI	CTGCAG	1 cut(s)	843
BspT107I	GGYRCC	1 cut(s)	349
BsrBI	CCGCTC	1 cut(s)	662
BsrDI	GCAATG	1 cut(s)	719
BsrFI	RCCGGY	2 cut(s)	346, 898
BsrI	ACTGG	1 cut(s)	884
BssAI	RCCGGY	2 cut(s)	346, 898
BssECI	CCNNGG	2 cut(s)	280, 412
BssMI	GATC	1 cut(s)	112
BssNI	GRCGYC	3 cut(s)	63, 96, 264
Bst2UI	CCWGG	1 cut(s)	268
Bst4CI	ACNGT	1 cut(s)	388
BstACI	GRCGYC	3 cut(s)	63, 96, 264
BstAPI	GCANNNNNTGC	1 cut(s)	653
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	1 cut(s)	293
BstF5I	GGATG	1 cut(s)	125
BstKTI	GATC	1 cut(s)	115
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	1 cut(s)	112
BstMCI	CGRYCG	2 cut(s)	342, 429
BstMWI	GCNNNNNNNGC	3 cut(s)	434, 653, 659
BstNI	CCWGG	1 cut(s)	268
BstNSI	RCATGY	1 cut(s)	574
BstSCI	CCNGG	2 cut(s)	266, 336
BstSFI	CTRYAG	1 cut(s)	839
BstV1I	GCAGC	2 cut(s)	640, 825
BstZI	CGGCCG	1 cut(s)	426
BsuRI	GGCC	6 cut(s)	144, 187, 316, 428, 437, 890
BtrI	CACGTC	1 cut(s)	123
BtsCI	GGATG	1 cut(s)	125
BtsIMutI	CAGTG	1 cut(s)	891
Cac8I	GCNNGC	1 cut(s)	354
Cfr10I	RCCGGY	2 cut(s)	346, 898
Cfr13I	GGNCC	3 cut(s)	143, 186, 334
CseI	GACGC	3 cut(s)	71, 104, 272
Csp6I	GTAC	1 cut(s)	820
CspAI	ACCGGT	1 cut(s)	346
CviAII	CATG	2 cut(s)	439, 571
CviQI	GTAC	1 cut(s)	820
DdeI	CTNAG	1 cut(s)	293
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
EaeI	YGGCCR	2 cut(s)	426, 435
EagI	CGGCCG	1 cut(s)	426
EciI	GGCGGA	1 cut(s)	79
EclXI	CGGCCG	1 cut(s)	426
Eco24I	GRGCYC	2 cut(s)	383, 510
Eco47I	GGWCC	1 cut(s)	334
Eco52I	CGGCCG	1 cut(s)	426
EcoO109I	RGGNCCY	1 cut(s)	334
EcoRII	CCWGG	1 cut(s)	266
EcoT38I	GRGCYC	2 cut(s)	383, 510
Esp3I	CGTCTC	1 cut(s)	185
FaeI	CATG	2 cut(s)	442, 574
FaiI	YATR	7 cut(s)	440, 561, 572, 756, 815, 879, 894
FatI	CATG	2 cut(s)	438, 570
FauI	CCCGC	1 cut(s)	200
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	5 cut(s)	317, 399, 654, 836, 839
FokI	GGATG	1 cut(s)	112
FriOI	GRGCYC	2 cut(s)	383, 510
Fsp4HI	GCNGC	5 cut(s)	317, 399, 654, 836, 839
GluI	GCNGC	5 cut(s)	317, 399, 654, 836, 839
GsaI	CCCAGC	1 cut(s)	548
HaeIII	GGCC	6 cut(s)	144, 187, 316, 428, 437, 890
HapII	CCGG	8 cut(s)	184, 207, 304, 320, 338, 347, 657, 899
HgaI	GACGC	3 cut(s)	71, 104, 272
Hin1I	GRCGYC	3 cut(s)	63, 96, 264
Hin1II	CATG	2 cut(s)	442, 574
HincII	GTYRAC	2 cut(s)	49, 583
HindII	GTYRAC	2 cut(s)	49, 583
HinfI	GANTC	8 cut(s)	149, 215, 323, 328, 422, 431, 701, 726
HpaII	CCGG	8 cut(s)	184, 207, 304, 320, 338, 347, 657, 899
HphI	GGTGA	4 cut(s)	431, 461, 692, 700
Hpy166II	GTNNAC	2 cut(s)	49, 583
Hpy188I	TCNGA	4 cut(s)	165, 296, 360, 522
Hpy188III	TCNNGA	1 cut(s)	332
Hpy8I	GTNNAC	2 cut(s)	49, 583
HpyAV	CCTTC	2 cut(s)	685, 706
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4IV	ACGT	4 cut(s)	45, 51, 122, 539
HpyCH4V	TGCA	3 cut(s)	442, 841, 914
HpyF10VI	GCNNNNNNNGC	3 cut(s)	434, 653, 659
HpyF3I	CTNAG	1 cut(s)	293
HpySE526I	ACGT	4 cut(s)	45, 51, 122, 539
Hsp92I	GRCGYC	3 cut(s)	63, 96, 264
Hsp92II	CATG	2 cut(s)	442, 574
Kzo9I	GATC	1 cut(s)	112
LmnI	GCTCC	3 cut(s)	361, 513, 659
Lsp1109I	GCAGC	2 cut(s)	640, 825
MaeII	ACGT	4 cut(s)	45, 51, 122, 539
MaeIII	GTNAC	4 cut(s)	388, 419, 449, 535
MalI	GATC	1 cut(s)	114
MbiI	CCGCTC	1 cut(s)	662
MboI	GATC	1 cut(s)	112
MboII	GAAGA	1 cut(s)	49
MfeI	CAATTG	1 cut(s)	501
MhlI	GDGCHC	2 cut(s)	383, 510
MluCI	AATT	8 cut(s)	274, 307, 501, 513, 525, 562, 594, 637
MlyI	GAGTC	5 cut(s)	209, 332, 416, 425, 695
MmeI	TCCRAC	1 cut(s)	188
MseI	TTAA	2 cut(s)	462, 516
MspA1I	CMGCKG	1 cut(s)	838
MspI	CCGG	8 cut(s)	184, 207, 304, 320, 338, 347, 657, 899
MspR9I	CCNGG	2 cut(s)	268, 338
MunI	CAATTG	1 cut(s)	501
MvaI	CCWGG	1 cut(s)	268
MwoI	GCNNNNNNNGC	3 cut(s)	434, 653, 659
NciI	CCSGG	1 cut(s)	338
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	2 cut(s)	442, 574
NlaIV	GGNNCC	4 cut(s)	145, 336, 351, 509
NmeAIII	GCCGAG	3 cut(s)	221, 404, 413
NmuCI	GTSAC	2 cut(s)	419, 449
NspI	RCATGY	1 cut(s)	574
PcsI	WCGNNNNNNNCGW	5 cut(s)	57, 66, 69, 108, 144
PfeI	GAWTC	3 cut(s)	149, 328, 726
PflFI	GACNNNGTC	1 cut(s)	338
PinAI	ACCGGT	1 cut(s)	346
PkrI	GCNGC	5 cut(s)	318, 400, 655, 837, 840
PleI	GAGTC	5 cut(s)	209, 331, 416, 425, 695
PpsI	GAGTC	5 cut(s)	209, 331, 416, 425, 695
PpuMI	RGGWCCY	1 cut(s)	334
PshBI	ATTAAT	1 cut(s)	516
Psp1406I	AACGTT	1 cut(s)	539
Psp5II	RGGWCCY	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	266
PspFI	CCCAGC	1 cut(s)	544
PspGI	CCWGG	1 cut(s)	266
PspN4I	GGNNCC	4 cut(s)	145, 336, 351, 509
PspPI	GGNCC	3 cut(s)	143, 186, 334
PspPPI	RGGWCCY	1 cut(s)	334
PsrI	GAACNNNNNNTAC	2 cut(s)	851, 883
PstI	CTGCAG	1 cut(s)	843
PsyI	GACNNNGTC	1 cut(s)	338
RsaI	GTAC	1 cut(s)	821
RsaNI	GTAC	1 cut(s)	820
SalI	GTCGAC	1 cut(s)	47
SaqAI	TTAA	2 cut(s)	462, 516
SatI	GCNGC	5 cut(s)	317, 399, 654, 836, 839
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	3 cut(s)	143, 186, 334
SchI	GAGTC	5 cut(s)	209, 332, 416, 425, 695
ScrFI	CCNGG	2 cut(s)	268, 338
SduI	GDGCHC	2 cut(s)	383, 510
SfcI	CTRYAG	1 cut(s)	839
SfiI	GGCCNNNNNGGCC	1 cut(s)	434
SgrDI	CGTCGACG	1 cut(s)	47
SinI	GGWCC	1 cut(s)	334
Sse9I	AATT	8 cut(s)	274, 307, 501, 513, 525, 562, 594, 637
SsiI	CCGC	8 cut(s)	90, 193, 317, 396, 399, 417, 662, 836
StyD4I	CCNGG	2 cut(s)	266, 336
TaaI	ACNGT	1 cut(s)	388
TaiI	ACGT	4 cut(s)	48, 54, 125, 542
TaqI	TCGA	8 cut(s)	48, 60, 69, 138, 326, 342, 383, 831
TaqII	GACCGA	1 cut(s)	426
TasI	AATT	8 cut(s)	274, 307, 501, 513, 525, 562, 594, 637
TauI	GCSGC	3 cut(s)	319, 401, 838
TfiI	GAWTC	3 cut(s)	149, 328, 726
Tru1I	TTAA	2 cut(s)	462, 516
Tru9I	TTAA	2 cut(s)	462, 516
TscAI	CASTG	1 cut(s)	891
TseFI	GTSAC	2 cut(s)	419, 449
TseI	GCWGC	2 cut(s)	653, 838
Tsp45I	GTSAC	2 cut(s)	419, 449
TspGWI	ACGGA	1 cut(s)	167
TspRI	CASTG	1 cut(s)	891
Tth111I	GACNNNGTC	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	334
VspI	ATTAAT	1 cut(s)	516
XapI	RAATTY	2 cut(s)	307, 637
XceI	RCATGY	1 cut(s)	574
XmiI	GTMKAC	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.