Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003368.1

Orthogroup ID

OG0003222

Physical Location & Seq

Genomic Coordinates Reverse (-)

54517 .. 57447

Gene Structure 2931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003368.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atggaggattcaagaattctcgaagctcatgatctttctgataatggccccgaagggttctcgcggggttttgaactcgaatgtgatgttgaatcacaaaggttgttccatgtgctgaaatgttctatgctcaaattggctctggatggggctgacaaggtgttcaaggatcatagaacactgaatagtaacatatctgtacttcgatgtcgagctagatttgctggtgatcatggaggagaaaggaggtctagtctggattcaacccaagtatttgaagaaaatgttgttgaagaaagaagagatggagctataagacccccttcggagggaaacaaacctgctaactctttgctacatcatcaatcgagcaaagattgcgttaatgtatcacaagtgctccaaaaccagcttggtgtgcaaaccgtctcttttgctgctgtgattgcgtgggagtgccagcaccgtggggggattctggcatctggatttgtgctaagtgggtttgtgatgaaacacctggttgagaagcctattaagaccatagagaccctcaactttgattacaccaagccaagtccagtagctttggtgccactcatgtcttctaatgttggtgttataccttatggtcacaaattgaagatgattgtttcgttgactgtgcctgactcggaatacaatcacagacttggtgtctttcatccatccatgcatgctgcaattcaatacattcagacctttctgagaagtgctcctcttatcgctggtttacaatcagaaacccaagttctgaacatcaaaatcaatgaacacgctgaaggacttgagccaactacccgcttgaaggatactggaacaaagagcagaattccaccatggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Seipin

Protein Analysis

294

Amino Acids

32.63

Weight (kDa)

6.67

Isoelectric Point (pI)

49.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003222)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29760 AT2G34380
fragaria_vesca	FvH4_3g07070 FvH4_3g17950 FvH4_3g17960 FvH4_6g08010
malus_domestica	MD00G1007100.v1.1 MD03G1246800.v1.1 MD11G1267400.v1.1
prunus_persica	Prupe.4G068800_v2.0.a1 Prupe.4G068800_v2.0.a1 Prupe.4G158100_v2.0.a1 Prupe.4G158200_v2.0.a1
pyrus_communis	pycom03g19590 pycom05g27230 pycom10g22850
rosa_chinensis	RchiOBHm_Chr5g0012061
rosa_laevigata	RLG00000031882 RLG00000033207 RLG00000033208 RLG00000034416
rosa_multiflora	Rmu_sc0002519.1_g000007 Rmu_sc0003368.1_g000013 Rmu_sc0018966.1_g000004
rosa_roxburghii	Rroxscaffold_1G00050020 Rroxscaffold_1G00064530
rosa_rugosa	Rorug04G0460500 Rorug05G0116300
rosa_samantha	Rh5AG092700 Rh5AG209300 Rh5BG088700 Rh5BG208200 Rh5CG102400 Rh5CG232000 Rh5DG089100
rosa_wichuraiana	Rw5G008100 Rw5G019060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	349
AccB1I	GGYRCC	1 cut(s)	592
AccII	CGCG	1 cut(s)	64
AciI	CCGC	2 cut(s)	64, 841
AclWI	GGATC	1 cut(s)	177
AcsI	RAATTY	2 cut(s)	15, 870
AcuI	CTGAAG	1 cut(s)	840
AfaI	GTAC	1 cut(s)	201
AfiI	CCNNNNNNNGG	3 cut(s)	328, 329, 847
AhdI	GACNNNNNGTC	1 cut(s)	695
AjnI	CCWGG	1 cut(s)	519
AleI	CACNNNNGTG	1 cut(s)	880
AluBI	AGCT	5 cut(s)	26, 215, 311, 412, 587
AluI	AGCT	5 cut(s)	26, 215, 311, 412, 587
Alw21I	GWGCWC	2 cut(s)	402, 757
Alw26I	GTCTC	2 cut(s)	433, 542
AlwI	GGATC	1 cut(s)	177
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	2 cut(s)	437, 719
ApoI	RAATTY	2 cut(s)	15, 870
AspS9I	GGNCC	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	239
BanI	GGYRCC	1 cut(s)	592
BbsI	GAAGAC	1 cut(s)	597
Bbv12I	GWGCWC	2 cut(s)	402, 757
BbvI	GCAGC	2 cut(s)	424, 706
BccI	CCATC	3 cut(s)	140, 299, 715
BciT130I	CCWGG	1 cut(s)	521
BciVI	GTATCC	1 cut(s)	844
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	2 cut(s)	433, 542
BfaI	CTAG	2 cut(s)	216, 252
BfuAI	ACCTGC	1 cut(s)	349
BfuI	GTATCC	1 cut(s)	844
BisI	GCNGC	2 cut(s)	438, 720
BlsI	GCNGC	2 cut(s)	439, 721
Bme1390I	CCNGG	1 cut(s)	521
BmeRI	GACNNNNNGTC	1 cut(s)	695
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	2 cut(s)	49, 594
BmrFI	CCNGG	1 cut(s)	521
BmsI	GCATC	1 cut(s)	491
BpiI	GAAGAC	1 cut(s)	597
BplI	GAGNNNNNCTC	2 cut(s)	739, 771
BpuEI	CTTGAG	1 cut(s)	848
BsaI	GGTCTC	1 cut(s)	542
BsaJI	CCNNGG	2 cut(s)	466, 878
BsaXI	ACNNNNNCTCC	4 cut(s)	238, 268, 384, 414
Bsc4I	CCNNNNNNNGG	3 cut(s)	328, 329, 847
Bse1I	ACTGG	2 cut(s)	581, 859
BseBI	CCWGG	1 cut(s)	521
BseDI	CCNNGG	2 cut(s)	466, 878
BseGI	GGATG	3 cut(s)	151, 703, 707
BseLI	CCNNNNNNNGG	3 cut(s)	328, 329, 847
BseMII	CTCAG	1 cut(s)	737
BseNI	ACTGG	2 cut(s)	581, 859
BseRI	GAGGAG	2 cut(s)	252, 747
BseXI	GCAGC	2 cut(s)	424, 706
Bsh1236I	CGCG	1 cut(s)	64
BshFI	GGCC	1 cut(s)	48
BshNI	GGYRCC	1 cut(s)	592
BsiHKAI	GWGCWC	2 cut(s)	402, 757
BslI	CCNNNNNNNGG	3 cut(s)	328, 329, 847
BsmAI	GTCTC	2 cut(s)	433, 542
BsmBI	CGTCTC	1 cut(s)	433
BsnI	GGCC	1 cut(s)	48
Bso31I	GGTCTC	1 cut(s)	542
Bsp1286I	GDGCHC	2 cut(s)	402, 757
Bsp143I	GATC	3 cut(s)	31, 169, 229
Bsp19I	CCATGG	1 cut(s)	878
BspACI	CCGC	2 cut(s)	64, 841
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	738
BspFNI	CGCG	1 cut(s)	64
BspHI	TCATGA	1 cut(s)	28
BspLI	GGNNCC	2 cut(s)	49, 594
BspMI	ACCTGC	1 cut(s)	349
BspPI	GGATC	1 cut(s)	177
BspT107I	GGYRCC	1 cut(s)	592
BspTNI	GGTCTC	1 cut(s)	542
BsrI	ACTGG	2 cut(s)	581, 859
BssECI	CCNNGG	2 cut(s)	466, 878
BssMI	GATC	3 cut(s)	31, 169, 229
BssT1I	CCWWGG	1 cut(s)	878
Bst2UI	CCWGG	1 cut(s)	521
Bst4CI	ACNGT	3 cut(s)	427, 467, 664
Bst6I	CTCTTC	1 cut(s)	295
BstAPI	GCANNNNNTGC	1 cut(s)	378
BstC8I	GCNNGC	2 cut(s)	461, 717
BstDEI	CTNAG	2 cut(s)	497, 746
BstDSI	CCRYGG	2 cut(s)	466, 878
BstF5I	GGATG	3 cut(s)	151, 703, 707
BstFNI	CGCG	1 cut(s)	64
BstKTI	GATC	3 cut(s)	34, 172, 232
BstMAI	GTCTC	2 cut(s)	433, 542
BstMBI	GATC	3 cut(s)	31, 169, 229
BstMWI	GCNNNNNNNGC	4 cut(s)	221, 378, 418, 446
BstNI	CCWGG	1 cut(s)	521
BstNSI	RCATGY	1 cut(s)	719
BstSCI	CCNGG	1 cut(s)	519
BstUI	CGCG	1 cut(s)	64
BstV1I	GCAGC	2 cut(s)	424, 706
BstV2I	GAAGAC	1 cut(s)	597
BstXI	CCANNNNNNTGG	1 cut(s)	467
BsuI	GTATCC	1 cut(s)	844
BsuRI	GGCC	1 cut(s)	48
BtgI	CCRYGG	2 cut(s)	466, 878
BtsCI	GGATG	3 cut(s)	151, 703, 707
BtsIMutI	CAGTG	1 cut(s)	179
BveI	ACCTGC	1 cut(s)	349
Cac8I	GCNNGC	2 cut(s)	461, 717
CciI	TCATGA	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	47
CsiI	ACCWGGT	1 cut(s)	519
Csp6I	GTAC	1 cut(s)	200
CviAII	CATG	7 cut(s)	29, 110, 233, 601, 712, 716, 879
CviQI	GTAC	1 cut(s)	200
DdeI	CTNAG	2 cut(s)	497, 746
DpnI	GATC	3 cut(s)	33, 171, 231
DpnII	GATC	3 cut(s)	31, 169, 229
DriI	GACNNNNNGTC	1 cut(s)	695
Eam1104I	CTCTTC	1 cut(s)	295
Eam1105I	GACNNNNNGTC	1 cut(s)	695
EarI	CTCTTC	1 cut(s)	295
Eco130I	CCWWGG	1 cut(s)	878
Eco31I	GGTCTC	1 cut(s)	542
Eco57I	CTGAAG	1 cut(s)	840
EcoRI	GAATTC	2 cut(s)	15, 870
EcoRII	CCWGG	1 cut(s)	519
EcoT14I	CCWWGG	1 cut(s)	878
EcoT22I	ATGCAT	1 cut(s)	717
ErhI	CCWWGG	1 cut(s)	878
Esp3I	CGTCTC	1 cut(s)	433
FaeI	CATG	7 cut(s)	32, 113, 236, 604, 715, 719, 882
FalI	AAGNNNNNCTT	2 cut(s)	307, 339
FatI	CATG	7 cut(s)	28, 109, 232, 600, 711, 715, 878
FauI	CCCGC	2 cut(s)	57, 848
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	2 cut(s)	438, 720
FokI	GGATG	3 cut(s)	158, 690, 694
Fsp4HI	GCNGC	2 cut(s)	438, 720
FspBI	CTAG	2 cut(s)	216, 252
GluI	GCNGC	2 cut(s)	438, 720
HaeIII	GGCC	1 cut(s)	48
Hin1II	CATG	7 cut(s)	32, 113, 236, 604, 715, 719, 882
HincII	GTYRAC	1 cut(s)	660
HindII	GTYRAC	1 cut(s)	660
HinfI	GANTC	5 cut(s)	8, 92, 260, 475, 671
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	2 cut(s)	660, 773
Hpy188I	TCNGA	7 cut(s)	40, 328, 676, 738, 747, 781, 795
Hpy188III	TCNNGA	6 cut(s)	12, 20, 29, 143, 257, 486
Hpy8I	GTNNAC	2 cut(s)	660, 773
HpyAV	CCTTC	4 cut(s)	47, 333, 815, 841
HpyCH4III	ACNGT	3 cut(s)	427, 467, 664
HpyCH4V	TGCA	3 cut(s)	421, 715, 722
HpyF10VI	GCNNNNNNNGC	4 cut(s)	221, 378, 418, 446
HpyF3I	CTNAG	2 cut(s)	497, 746
Hsp92II	CATG	7 cut(s)	32, 113, 236, 604, 715, 719, 882
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	3 cut(s)	31, 169, 229
LmnI	GCTCC	3 cut(s)	308, 405, 760
Lsp1109I	GCAGC	2 cut(s)	424, 706
LweI	GCATC	1 cut(s)	491
MabI	ACCWGGT	1 cut(s)	519
MaeI	CTAG	2 cut(s)	216, 252
MaeIII	GTNAC	2 cut(s)	188, 632
MalI	GATC	3 cut(s)	33, 171, 231
MboI	GATC	3 cut(s)	31, 169, 229
MboII	GAAGA	5 cut(s)	290, 305, 312, 597, 655
MhlI	GDGCHC	2 cut(s)	402, 757
MluCI	AATT	5 cut(s)	15, 134, 638, 723, 870
MlyI	GAGTC	1 cut(s)	665
MnlI	CCTC	5 cut(s)	230, 240, 322, 563, 768
Mph1103I	ATGCAT	1 cut(s)	717
MseI	TTAA	2 cut(s)	384, 537
MslI	CAYNNNNRTG	1 cut(s)	880
MspR9I	CCNGG	1 cut(s)	521
MvaI	CCWGG	1 cut(s)	521
MvnI	CGCG	1 cut(s)	64
MwoI	GCNNNNNNNGC	4 cut(s)	221, 378, 418, 446
NcoI	CCATGG	1 cut(s)	878
NdeII	GATC	3 cut(s)	31, 169, 229
NlaIII	CATG	7 cut(s)	32, 113, 236, 604, 715, 719, 882
NlaIV	GGNNCC	2 cut(s)	49, 594
NmuCI	GTSAC	1 cut(s)	632
NsiI	ATGCAT	1 cut(s)	717
NspI	RCATGY	1 cut(s)	719
OliI	CACNNNNGTG	1 cut(s)	880
PaeI	GCATGC	1 cut(s)	719
PagI	TCATGA	1 cut(s)	28
PfeI	GAWTC	4 cut(s)	8, 92, 260, 475
PkrI	GCNGC	2 cut(s)	439, 721
PleI	GAGTC	1 cut(s)	665
PpsI	GAGTC	1 cut(s)	665
Psp6I	CCWGG	1 cut(s)	519
PspGI	CCWGG	1 cut(s)	519
PspN4I	GGNNCC	2 cut(s)	49, 594
PspPI	GGNCC	1 cut(s)	47
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
RseI	CAYNNNNRTG	1 cut(s)	880
SaqAI	TTAA	2 cut(s)	384, 537
SatI	GCNGC	2 cut(s)	438, 720
Sau3AI	GATC	3 cut(s)	31, 169, 229
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	1 cut(s)	665
ScrFI	CCNGG	1 cut(s)	521
SduI	GDGCHC	2 cut(s)	402, 757
SexAI	ACCWGGT	1 cut(s)	519
SfaNI	GCATC	1 cut(s)	491
SmiMI	CAYNNNNRTG	1 cut(s)	880
SmlI	CTYRAG	1 cut(s)	827
SmoI	CTYRAG	1 cut(s)	827
SphI	GCATGC	1 cut(s)	719
Sse9I	AATT	5 cut(s)	15, 134, 638, 723, 870
SsiI	CCGC	2 cut(s)	64, 841
SspMI	CTAG	2 cut(s)	216, 252
StyD4I	CCNGG	1 cut(s)	519
StyI	CCWWGG	1 cut(s)	878
TaaI	ACNGT	3 cut(s)	427, 467, 664
TaqI	TCGA	5 cut(s)	21, 78, 205, 211, 368
TasI	AATT	5 cut(s)	15, 134, 638, 723, 870
TatI	WGTACW	1 cut(s)	199
TfiI	GAWTC	4 cut(s)	8, 92, 260, 475
Tru1I	TTAA	2 cut(s)	384, 537
Tru9I	TTAA	2 cut(s)	384, 537
TscAI	CASTG	1 cut(s)	186
TseFI	GTSAC	1 cut(s)	632
TseI	GCWGC	2 cut(s)	437, 719
Tsp45I	GTSAC	1 cut(s)	632
TspDTI	ATGAA	3 cut(s)	527, 692, 825
TspRI	CASTG	1 cut(s)	186
XapI	RAATTY	2 cut(s)	15, 870
XceI	RCATGY	1 cut(s)	719
XcmI	CCANNNNNNNNNTGG	1 cut(s)	410
XspI	CTAG	2 cut(s)	216, 252
Zsp2I	ATGCAT	1 cut(s)	717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.