Rh5AG209300

Putative adipose-regulatory protein (Seipin)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003222
Physical Location & Seq
Forward (+)
24713598 .. 24714167
570 bp
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UTR
Exon/CDS
Intron
Rh5AG209300.1

Sequence Viewer

Length: 288 bp
ATGAAACGCCTGGTTGAGAAGCCTATTAAGACCATAGAGACCCTCAACTTTGATTACACCAAGCCAAGTCCAGTAGCTTTGGTGCCACTCATGTCTTCTAATGTTGGTGTTATACCTTATGGTCACAAATTGAAGATGATTGTTTCGTTGACTGTGCCTGACTCGGAATACAATCACAGACTTGGTGTCTTTCATGTAAGAGTAGAGTTCTTGTCAGCTAATGGTGATGTCACTGCTAGTTCGAGCCATCCATGCATGCTGCAATTCAATACATTCAGACCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Seipin

Protein Analysis

95

Amino Acids

10.69

Weight (kDa)

9.25

Isoelectric Point (pI)

49.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Seipin PF06775 2 - 90 2e-21 Putative adipose-regulatory protein (Seipin)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 82
AgsI TTSAA 2 cut(s) 133, 268
AhdI GACNNNNNGTC 1 cut(s) 185
AjnI CCWGG 1 cut(s) 9
AluBI AGCT 2 cut(s) 77, 218
AluI AGCT 2 cut(s) 77, 218
Alw26I GTCTC 1 cut(s) 32
ApeKI GCWGC 1 cut(s) 259
AsuHPI GGTGA 1 cut(s) 236
BanI GGYRCC 1 cut(s) 82
BbsI GAAGAC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 246
BccI CCATC 1 cut(s) 255
BciT130I CCWGG 1 cut(s) 11
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 1 cut(s) 237
BisI GCNGC 1 cut(s) 260
BlsI GCNGC 1 cut(s) 261
Bme1390I CCNGG 1 cut(s) 11
BmeRI GACNNNNNGTC 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 11
BpiI GAAGAC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 71
BseBI CCWGG 1 cut(s) 11
BseGI GGATG 1 cut(s) 247
BseNI ACTGG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 246
BshNI GGYRCC 1 cut(s) 82
BsmAI GTCTC 1 cut(s) 32
Bso31I GGTCTC 1 cut(s) 32
BspLI GGNNCC 1 cut(s) 84
BspT107I GGYRCC 1 cut(s) 82
BspTNI GGTCTC 1 cut(s) 32
BsrI ACTGG 1 cut(s) 71
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 257
BstF5I GGATG 1 cut(s) 247
BstMAI GTCTC 1 cut(s) 32
BstMWI GCNNNNNNNGC 1 cut(s) 252
BstNI CCWGG 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 259
BstSCI CCNGG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 246
BstV2I GAAGAC 1 cut(s) 87
BtsCI GGATG 1 cut(s) 247
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 1 cut(s) 231
Cac8I GCNNGC 1 cut(s) 257
CviAII CATG 4 cut(s) 91, 194, 252, 256
CviJI RGCY 5 cut(s) 22, 64, 77, 218, 246
CviKI_1 RGCY 5 cut(s) 22, 64, 77, 218, 246
DriI GACNNNNNGTC 1 cut(s) 185
Eam1105I GACNNNNNGTC 1 cut(s) 185
Eco31I GGTCTC 1 cut(s) 32
EcoRII CCWGG 1 cut(s) 9
EcoT22I ATGCAT 1 cut(s) 257
FaeI CATG 4 cut(s) 94, 197, 255, 259
FaiI YATR 7 cut(s) 35, 92, 113, 120, 195, 253, 257
FatI CATG 4 cut(s) 90, 193, 251, 255
Fnu4HI GCNGC 1 cut(s) 260
FokI GGATG 1 cut(s) 234
Fsp4HI GCNGC 1 cut(s) 260
FspBI CTAG 1 cut(s) 237
GluI GCNGC 1 cut(s) 260
Hin1II CATG 4 cut(s) 94, 197, 255, 259
HincII GTYRAC 1 cut(s) 150
HindII GTYRAC 1 cut(s) 150
HinfI GANTC 1 cut(s) 161
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 1 cut(s) 150
Hpy188I TCNGA 3 cut(s) 166, 278, 287
Hpy8I GTNNAC 1 cut(s) 150
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 2 cut(s) 255, 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 252
Hsp92II CATG 4 cut(s) 94, 197, 255, 259
LpnPI CCDG 3 cut(s) 23, 84, 171
Lsp1109I GCAGC 1 cut(s) 246
MaeI CTAG 1 cut(s) 237
MaeIII GTNAC 2 cut(s) 122, 229
MboII GAAGA 2 cut(s) 87, 145
MluCI AATT 2 cut(s) 128, 263
MlyI GAGTC 1 cut(s) 155
MnlI CCTC 1 cut(s) 53
Mph1103I ATGCAT 1 cut(s) 257
MseI TTAA 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 252
NlaIII CATG 4 cut(s) 94, 197, 255, 259
NlaIV GGNNCC 1 cut(s) 84
NmuCI GTSAC 2 cut(s) 122, 229
NsiI ATGCAT 1 cut(s) 257
NspI RCATGY 1 cut(s) 259
PaeI GCATGC 1 cut(s) 259
PkrI GCNGC 1 cut(s) 261
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 1 cut(s) 84
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 1 cut(s) 260
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 11
SetI ASST 4 cut(s) 79, 118, 220, 283
SphI GCATGC 1 cut(s) 259
Sse9I AATT 2 cut(s) 128, 263
SspMI CTAG 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 9
TaaI ACNGT 1 cut(s) 154
TaqI TCGA 1 cut(s) 242
TasI AATT 2 cut(s) 128, 263
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 1 cut(s) 238
TseFI GTSAC 2 cut(s) 122, 229
TseI GCWGC 1 cut(s) 259
Tsp45I GTSAC 2 cut(s) 122, 229
TspDTI ATGAA 2 cut(s) 17, 182
TspRI CASTG 1 cut(s) 238
XceI RCATGY 1 cut(s) 259
XspI CTAG 1 cut(s) 237
Zsp2I ATGCAT 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.