AT1G30810

'FY-rich' domain, N-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003891
Physical Location & Seq
Reverse (-)
10936765 .. 10942292
5528 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G30810.3

Sequence Viewer

Length: 2460 bp
ATGGAAAATCCTCCATTAGAATCTGAGATCAAAGAGGATATGTCTTTGAAGAATCATCCTCCAGACAAGGATAAGGACAAAGACACTATCATGGAACAACCTAGTAGTCCACGTCATCGGAAGGTTGTTGCTAGATGGTTACCTGATGAAGCACAGAGGCCAATTATCAATGACGCTCCCGTATTCACTCCATCACTAGAGGAGTTTGTAGATCCACTTGCGTATATCGAGAAGATACGTCCACTAGCAGAGCCGTATGGTATCTGTCGAATCATCCCACCATCGACATGGAAGCCTCCTTGCCGGCTTAAGGAGAAGAGTATATGGGAGCAGACAAAGTTTCCTACTCGGATTCAAACCGTAGACCTGCTTCAGAACCGTGAGCCGATGAAGAAGAAACCGAAGAGTAGAAAGCGGAAACGGAGAAGAAACTCGAGAATGGGTTCGTCTAAGAGACGATCTGGTTCTTCTCCCGCTGAATCGACTTCATCACCCGAGGCTGAGGAGAAGTTTGGTTTCAATTCTGGTTCAGACTTCACTCTTGATGAGTTTGAGAAATATGCTCTGCATTTTAAAGACTCGTACTTTGAAAAGAAAGACTCTGGTGGAGATATAGTAAAATGGACACCGTCTGTGGATGATATAGAAGGGGAATACTGGCGGATAGTTGAGCAACCAACAGATGAAGTGGAGGTTTACTATGGAGCTGACTTGGAGAATGGGGTGCTTGGAAGCGGGTTTTATAAAAGAGCCGAGAAGTTTACCGGTAGCGATATGGAGCAGTACACATTATCTGGCTGGAACTTGAATAACTTACCACGGCTTCCTGGCTCTGTACTCTCTTTTGAAGATTGTGACATATCCGGAGTTCTAGTTCCATGGCTATATGTGGGAATGTGTTTTTCATCATTTTGTTGGCATGTGGAGGACCATCATTTATATTCACTTAACTATCATCACTTTGGGGAGCCAAAAGTATGGTATGGTGTTCCAGGAAGCAATGCAACCGCTCTCGAGAAGGCGATGAGGAAACATTTACCTGACTTGTTCGAAGAACAGCCTGATCTACTACATGGCCTGGTTACTCAGTTTTCTCCTTCAATACTGAAAGATGAGGGAGTCCAGGCTTACCGGGTCGTGCAGAATTCAGGGGAGTATGTATTGACATTCCCGAGGGCGTATCATGCTGGATTCAACTGCGGTTTCAACTGCGCAGAAGCGGTTAATGTGGCTCCGGTTGATTGGTTGGCTCATGGACAGAACGCTGTGGAACTATATAGTAAAGAGACAAGGAAGACTTCTCTGTCTCACGACAAGCTTCTTCTTGGAGCAGCTTATGAAGCGGTGAAGGCTCTTTGGGAACTCTCAGCTTCTGAGGGAAAGGAAAATACAACAAATTTGAGATGGAAGAGTTTCTGTGGGAAGAACGGGACACTTACCAACGCGATACAAGCTCGGTTACAAATGGAAGAGGGGAGAATTACAGCTCTTGGTAGGGATTCTTCAAGCTTGAAGAAGATGGAGAAGGACTTTGATTCAAACTGTGAAAGGGAATGTTTCTCATGCTTTTATGATTTGCATCTCTCGGCTTCTGGCTGCAAGTGCTCTCCCGAAGAATACGCGTGCCTTAAACATGCAGATGATCTTTGTTCATGTGATGTGAAAGATGGATTTATTCTTCTCCGGTACACAATGGATGAGTTAAGCTCGTTGGTCAGAGCATTGGAAGGGGAATCAGATGATTTAAAGATATGGGCTTCCAAGGTTTTAGGCATTGAACATAGTGATGAAGATCAGACAAAGACTAGTTCAGTTATCAGTGAGGAGAAGAAGTTAAAGGAAGGTTCTTTTGATCTGAACATTGACTTAGAGATGGATTATCAAGAAGACGTTAAAGAAGAAGCCAGCACTAGTGGCGGCGAGTTAACCGCCTCAGAGAACCTTGGTGTATCGGTCGAGCCTATAAACCTCGGGTTCTTGATTTTTGGAAAGCTTTGGTGCAATAAGTATGCTATATTCCCAAAAGGATTCAGGAGTCGTGTCAAGTTCTACAATGTTCTTGATCCAACAAGAATGAGCAATTACATCTCTGAGGTTTTGGATGCAGGACTCATGGGTCCATTGTTCAGGGTTACTCTGGAAGAATCTCCAGACGAGAGCTTCTTCAATGTCTCTGCACAACAATGCTGGGAAATGGTGATGCGGAGAGTTAAAGATACATCAACAAGTCTTGGTCTTCCTATTTTACCACAGTTTGAGAGTATCAACGGGCTTCAAATGTTTGGTTTCCTCTCACCCTCTATAGTTCAGGCCATTGAAGCTCTTGACCCAAACCATCGACTAGTTGAGTACTGGAACCACAAGAACCAAACTTCATCAGACTCAAAAGATCACTTCATATCATCAAACTGTTCCGCAAGTTTAACCAAAGGAAAACTTTTCGGAGTAGATTTGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008214 GO:0008276 GO:0009314 GO:0009416 GO:0009555 GO:0009628 GO:0009648 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010154 GO:0010216 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032451 GO:0032452 GO:0032453 GO:0032501 GO:0032502 GO:0034641 GO:0034647 GO:0034720 GO:0034721 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0048229 GO:0048316 GO:0048519 GO:0048523 GO:0048573 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FYRC FYRN JmjC JmjN zf-C5HC2

Protein Analysis

819

Amino Acids

92.81

Weight (kDa)

5.28

Isoelectric Point (pI)

46.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjN PF02375 60 - 93 5.1e-17 jmjN domain
JmjC PF02373 294 - 410 1.1e-45 JmjC domain, hydroxylase
zf-C5HC2 PF02928 519 - 571 1.5e-14 C5HC2 zinc finger
FYRN PF05964 655 - 701 1.1e-09 F/Y-rich N-terminus
FYRC PF05965 706 - 788 1e-23 F/Y rich C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 744
AasI GACNNNNNNGTC 2 cut(s) 1303, 2115
Acc16I TGCGCA 1 cut(s) 1213
Acc36I ACCTGC 1 cut(s) 375
AccBSI CCGCTC 1 cut(s) 1010
AccI GTMKAC 1 cut(s) 363
AccII CGCG 2 cut(s) 1445, 1622
AccIII TCCGGA 1 cut(s) 863
AclWI GGATC 2 cut(s) 206, 2057
AcsI RAATTY 2 cut(s) 1144, 1396
AcuI CTGAAG 1 cut(s) 356
AfaI GTAC 5 cut(s) 584, 785, 837, 1688, 2351
AfiI CCNNNNNNNGG 1 cut(s) 310
AflII CTTAAG 1 cut(s) 308
AflIII ACRYGT 1 cut(s) 1620
AgeI ACCGGT 1 cut(s) 764
AhlI ACTAGT 3 cut(s) 1805, 1910, 2341
AjiI CACGTC 1 cut(s) 113
AjnI CCWGG 4 cut(s) 826, 991, 1077, 1122
AloI GAACNNNNNNTCC 2 cut(s) 858, 890
Alw21I GWGCWC 1 cut(s) 1607
Alw26I GTCTC 4 cut(s) 448, 1280, 1311, 2176
AlwI GGATC 2 cut(s) 206, 2057
AlwNI CAGNNNCTG 1 cut(s) 1373
Ama87I CYCGRG 5 cut(s) 433, 494, 1013, 1171, 1970
Aor13HI TCCGGA 1 cut(s) 863
AoxI GGCC 3 cut(s) 158, 1075, 2310
ApeKI GCWGC 2 cut(s) 1331, 1596
ApoI RAATTY 2 cut(s) 1144, 1396
ArsI GACNNNNNNTTYG 2 cut(s) 569, 601
AsiGI ACCGGT 1 cut(s) 764
Asp700I GAANNNNTTC 2 cut(s) 442, 1412
AspLEI GCGC 1 cut(s) 1214
AspS9I GGNCC 2 cut(s) 928, 2117
AsuC2I CCSGG 1 cut(s) 1133
AsuHPI GGTGA 4 cut(s) 483, 1357, 2209, 2286
AsuII TTCGAA 1 cut(s) 1050
AvaI CYCGRG 5 cut(s) 433, 494, 1013, 1171, 1970
AvaII GGWCC 2 cut(s) 928, 2117
BarI GAAGNNNNNNTAC 4 cut(s) 354, 386, 1486, 1518
BbsI GAAGAC 3 cut(s) 1301, 1893, 2228
Bbv12I GWGCWC 1 cut(s) 1607
BbvCI CCTCAGC 1 cut(s) 501
BbvI GCAGC 2 cut(s) 1343, 1583
BccI CCATC 9 cut(s) 129, 199, 289, 939, 1398, 1513, 1661, 1867, 2343
BceAI ACGGC 2 cut(s) 238, 836
BciT130I CCWGG 4 cut(s) 828, 993, 1079, 1124
BcnI CCSGG 1 cut(s) 1133
BcoDI GTCTC 4 cut(s) 448, 1280, 1311, 2176
BcuI ACTAGT 3 cut(s) 1805, 1910, 2341
BfaI CTAG 8 cut(s) 102, 132, 197, 245, 872, 1806, 1911, 2342
BfmI CTRYAG 1 cut(s) 2301
BfrI CTTAAG 1 cut(s) 308
BfuAI ACCTGC 1 cut(s) 375
BisI GCNGC 3 cut(s) 1332, 1597, 1918
BlsI GCNGC 3 cut(s) 1333, 1598, 1919
BmcAI AGTACT 1 cut(s) 2351
Bme1390I CCNGG 5 cut(s) 828, 993, 1079, 1124, 1133
Bme18I GGWCC 2 cut(s) 928, 2117
BmeT110I CYCGRG 5 cut(s) 433, 494, 1013, 1171, 1970
BmgBI CACGTC 1 cut(s) 113
BmgT120I GGNCC 2 cut(s) 928, 2117
BmiI GGNNCC 4 cut(s) 969, 1233, 2118, 2357
BmrFI CCNGG 5 cut(s) 828, 993, 1079, 1124, 1133
BmsI GCATC 3 cut(s) 1588, 2092, 2190
BpiI GAAGAC 3 cut(s) 1301, 1893, 2228
BplI GAGNNNNNCTC 2 cut(s) 1691, 1723
BpmI CTGGAG 2 cut(s) 45, 2133
Bpu10I CCTNAGC 1 cut(s) 501
Bpu14I TTCGAA 1 cut(s) 1050
BpuMI CCSGG 1 cut(s) 1133
BsaBI GATNNNNATC 2 cut(s) 1578, 1791
BsaJI CCNNGG 7 cut(s) 495, 818, 878, 1172, 1761, 1942, 1969
BsaWI WCCGGW 4 cut(s) 764, 863, 1234, 1683
BsaXI ACNNNNNCTCC 6 cut(s) 600, 630, 858, 888, 1817, 1847
Bsc4I CCNNNNNNNGG 1 cut(s) 310
Bse118I RCCGGY 2 cut(s) 303, 764
Bse1I ACTGG 2 cut(s) 662, 2357
Bse3DI GCAATG 1 cut(s) 1006
Bse8I GATNNNNATC 2 cut(s) 1578, 1791
BseAI TCCGGA 1 cut(s) 863
BseBI CCWGG 4 cut(s) 828, 993, 1079, 1124
BseDI CCNNGG 7 cut(s) 495, 818, 878, 1172, 1761, 1942, 1969
BseGI GGATG 5 cut(s) 55, 273, 643, 1702, 2107
BseJI GATNNNNATC 2 cut(s) 1578, 1791
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMI GCAATG 1 cut(s) 1006
BseMII CTCAG 7 cut(s) 15, 492, 1100, 1365, 1380, 1947, 2082
BseNI ACTGG 2 cut(s) 662, 2357
BseRI GAGGAG 3 cut(s) 215, 518, 1838
BseXI GCAGC 2 cut(s) 1343, 1583
BseYI CCCAGC 1 cut(s) 2187
BsgI GTGCAG 2 cut(s) 1160, 2160
Bsh1236I CGCG 2 cut(s) 1445, 1622
Bsh1285I CGRYCG 1 cut(s) 1956
BshFI GGCC 3 cut(s) 160, 1077, 2312
BshTI ACCGGT 1 cut(s) 764
BsiEI CGRYCG 1 cut(s) 1956
BsiHKAI GWGCWC 1 cut(s) 1607
BsiHKCI CYCGRG 5 cut(s) 433, 494, 1013, 1171, 1970
BsiSI CCGG 6 cut(s) 304, 765, 864, 1132, 1235, 1684
BslFI GGGAC 1 cut(s) 1444
BslI CCNNNNNNNGG 1 cut(s) 310
BsmAI GTCTC 4 cut(s) 448, 1280, 1311, 2176
BsmBI CGTCTC 1 cut(s) 448
BsmFI GGGAC 1 cut(s) 1444
BsnI GGCC 3 cut(s) 160, 1077, 2312
BsoBI CYCGRG 5 cut(s) 433, 494, 1013, 1171, 1970
Bsp119I TTCGAA 1 cut(s) 1050
Bsp1286I GDGCHC 1 cut(s) 1607
Bsp13I TCCGGA 1 cut(s) 863
Bsp143I GATC 9 cut(s) 27, 211, 458, 1063, 1642, 1792, 1852, 2062, 2389
Bsp19I CCATGG 1 cut(s) 878
BspANI GGCC 3 cut(s) 160, 1077, 2312
BspCNI CTCAG 7 cut(s) 16, 493, 1099, 1366, 1379, 1946, 2083
BspEI TCCGGA 1 cut(s) 863
BspFNI CGCG 2 cut(s) 1445, 1622
BspLI GGNNCC 4 cut(s) 969, 1233, 2118, 2357
BspMI ACCTGC 1 cut(s) 375
BspPI GGATC 2 cut(s) 206, 2057
BspT104I TTCGAA 1 cut(s) 1050
BspTI CTTAAG 1 cut(s) 308
BsrBI CCGCTC 1 cut(s) 1010
BsrDI GCAATG 1 cut(s) 1006
BsrFI RCCGGY 2 cut(s) 303, 764
BsrI ACTGG 2 cut(s) 662, 2357
BssAI RCCGGY 2 cut(s) 303, 764
BssECI CCNNGG 7 cut(s) 495, 818, 878, 1172, 1761, 1942, 1969
BssMI GATC 9 cut(s) 27, 211, 458, 1063, 1642, 1792, 1852, 2062, 2389
BssT1I CCWWGG 3 cut(s) 878, 1761, 1942
Bst2UI CCWGG 4 cut(s) 828, 993, 1079, 1124
Bst4CI ACNGT 6 cut(s) 361, 380, 630, 1544, 2253, 2411
Bst6I CTCTTC 4 cut(s) 311, 398, 1403, 1464
BstAFI CTTAAG 1 cut(s) 308
BstBI TTCGAA 1 cut(s) 1050
BstC8I GCNNGC 3 cut(s) 305, 1624, 1906
BstDEI CTNAG 9 cut(s) 24, 450, 501, 1086, 1366, 1374, 1867, 1933, 2091
BstDSI CCRYGG 2 cut(s) 818, 878
BstEII GGTNACC 1 cut(s) 138
BstF5I GGATG 5 cut(s) 55, 273, 643, 1702, 2107
BstFNI CGCG 2 cut(s) 1445, 1622
BstHHI GCGC 1 cut(s) 1214
BstKTI GATC 9 cut(s) 30, 214, 461, 1066, 1645, 1795, 1855, 2065, 2392
BstMAI GTCTC 4 cut(s) 448, 1280, 1311, 2176
BstMBI GATC 9 cut(s) 27, 211, 458, 1063, 1642, 1792, 1852, 2062, 2389
BstMCI CGRYCG 1 cut(s) 1956
BstMWI GCNNNNNNNGC 7 cut(s) 1184, 1340, 1349, 1451, 1602, 1914, 2318
BstNI CCWGG 4 cut(s) 828, 993, 1079, 1124
BstNSI RCATGY 2 cut(s) 923, 1637
BstPI GGTNACC 1 cut(s) 138
BstSCI CCNGG 5 cut(s) 826, 991, 1077, 1122, 1131
BstSFI CTRYAG 1 cut(s) 2301
BstUI CGCG 2 cut(s) 1445, 1622
BstV1I GCAGC 2 cut(s) 1343, 1583
BstV2I GAAGAC 3 cut(s) 1301, 1893, 2228
BstX2I RGATCY 1 cut(s) 211
BstXI CCANNNNNNTGG 2 cut(s) 288, 978
BstYI RGATCY 1 cut(s) 211
BsuRI GGCC 3 cut(s) 160, 1077, 2312
BtgI CCRYGG 2 cut(s) 818, 878
BtgZI GCGATG 1 cut(s) 1037
BtrI CACGTC 1 cut(s) 113
BtsCI GGATG 5 cut(s) 55, 273, 643, 1702, 2107
BtsIMutI CAGTG 1 cut(s) 1825
BveI ACCTGC 1 cut(s) 375
Cac8I GCNNGC 3 cut(s) 305, 1624, 1906
CaiI CAGNNNCTG 1 cut(s) 1373
CfoI GCGC 1 cut(s) 1214
Cfr10I RCCGGY 2 cut(s) 303, 764
Cfr13I GGNCC 2 cut(s) 928, 2117
CseI GACGC 1 cut(s) 182
Csp6I GTAC 5 cut(s) 583, 784, 836, 1687, 2350
CspAI ACCGGT 1 cut(s) 764
CviQI GTAC 5 cut(s) 583, 784, 836, 1687, 2350
DdeI CTNAG 9 cut(s) 24, 450, 501, 1086, 1366, 1374, 1867, 1933, 2091
DpnI GATC 9 cut(s) 29, 213, 460, 1065, 1644, 1794, 1854, 2064, 2391
DpnII GATC 9 cut(s) 27, 211, 458, 1063, 1642, 1792, 1852, 2062, 2389
DraI TTTAAA 2 cut(s) 574, 1746
DrdI GACNNNNNNGTC 2 cut(s) 1303, 2115
DseDI GACNNNNNNGTC 2 cut(s) 1303, 2115
Eam1104I CTCTTC 4 cut(s) 311, 398, 1403, 1464
EarI CTCTTC 4 cut(s) 311, 398, 1403, 1464
EciI GGCGGA 1 cut(s) 676
Eco130I CCWWGG 3 cut(s) 878, 1761, 1942
Eco47I GGWCC 2 cut(s) 928, 2117
Eco57I CTGAAG 1 cut(s) 356
Eco88I CYCGRG 5 cut(s) 433, 494, 1013, 1171, 1970
Eco91I GGTNACC 1 cut(s) 138
EcoO65I GGTNACC 1 cut(s) 138
EcoRI GAATTC 1 cut(s) 1144
EcoRII CCWGG 4 cut(s) 826, 991, 1077, 1122
EcoT14I CCWWGG 3 cut(s) 878, 1761, 1942
ErhI CCWWGG 3 cut(s) 878, 1761, 1942
Esp3I CGTCTC 1 cut(s) 448
FalI AAGNNNNNCTT 4 cut(s) 1282, 1314, 2421, 2453
FaqI GGGAC 1 cut(s) 1444
FauI CCCGC 2 cut(s) 481, 728
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 3 cut(s) 1332, 1597, 1918
FokI GGATG 5 cut(s) 42, 260, 650, 1709, 2114
Fsp4HI GCNGC 3 cut(s) 1332, 1597, 1918
FspBI CTAG 8 cut(s) 102, 132, 197, 245, 872, 1806, 1911, 2342
FspI TGCGCA 1 cut(s) 1213
GlaI GCGC 1 cut(s) 1213
GluI GCNGC 3 cut(s) 1332, 1597, 1918
GsaI CCCAGC 1 cut(s) 2191
GsuI CTGGAG 2 cut(s) 45, 2133
HaeIII GGCC 3 cut(s) 160, 1077, 2312
HapII CCGG 6 cut(s) 304, 765, 864, 1132, 1235, 1684
HgaI GACGC 1 cut(s) 182
HhaI GCGC 1 cut(s) 1214
Hin6I GCGC 1 cut(s) 1212
HinP1I GCGC 1 cut(s) 1212
HincII GTYRAC 1 cut(s) 1926
HindII GTYRAC 1 cut(s) 1926
HindIII AAGCTT 3 cut(s) 1316, 1507, 1991
HpaI GTTAAC 1 cut(s) 1926
HpaII CCGG 6 cut(s) 304, 765, 864, 1132, 1235, 1684
HphI GGTGA 4 cut(s) 483, 1357, 2209, 2286
Hpy166II GTNNAC 8 cut(s) 110, 242, 364, 697, 762, 786, 1689, 1926
Hpy8I GTNNAC 8 cut(s) 110, 242, 364, 697, 762, 786, 1689, 1926
HpyAV CCTTC 8 cut(s) 115, 641, 1012, 1107, 1342, 1519, 1721, 1835
HpyCH4III ACNGT 6 cut(s) 361, 380, 630, 1544, 2253, 2411
HpyCH4IV ACGT 3 cut(s) 112, 238, 1890
HpyCH4V TGCA 9 cut(s) 568, 1004, 1141, 1579, 1599, 1637, 2001, 2105, 2177
HpyF10VI GCNNNNNNNGC 7 cut(s) 1184, 1340, 1349, 1451, 1602, 1914, 2318
HpyF3I CTNAG 9 cut(s) 24, 450, 501, 1086, 1366, 1374, 1867, 1933, 2091
HpySE526I ACGT 3 cut(s) 112, 238, 1890
HspAI GCGC 1 cut(s) 1212
Kpn2I TCCGGA 1 cut(s) 863
KroI GCCGGC 1 cut(s) 303
KroNI GCCGGC 1 cut(s) 305
KspAI GTTAAC 1 cut(s) 1926
Kzo9I GATC 9 cut(s) 27, 211, 458, 1063, 1642, 1792, 1852, 2062, 2389
LmnI GCTCC 7 cut(s) 181, 328, 704, 778, 967, 1237, 1328
Lsp1109I GCAGC 2 cut(s) 1343, 1583
LweI GCATC 3 cut(s) 1588, 2092, 2190
MaeI CTAG 8 cut(s) 102, 132, 197, 245, 872, 1806, 1911, 2342
MaeII ACGT 3 cut(s) 112, 238, 1890
MaeIII GTNAC 5 cut(s) 138, 854, 1081, 1458, 2131
MalI GATC 9 cut(s) 29, 213, 460, 1065, 1644, 1794, 1854, 2064, 2391
MbiI CCGCTC 1 cut(s) 1010
MboI GATC 9 cut(s) 27, 211, 458, 1063, 1642, 1792, 1852, 2062, 2389
MflI RGATCY 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 1607
MluCI AATT 6 cut(s) 162, 520, 1144, 1396, 1479, 2080
MluI ACGCGT 1 cut(s) 1620
MlyI GAGTC 6 cut(s) 572, 593, 1128, 2044, 2103, 2375
MmeI TCCRAC 1 cut(s) 2090
MroI TCCGGA 1 cut(s) 863
MroNI GCCGGC 1 cut(s) 303
MroXI GAANNNNTTC 2 cut(s) 442, 1412
MslI CAYNNNNRTG 5 cut(s) 89, 286, 1638, 1785, 2182
MspA1I CMGCKG 1 cut(s) 476
MspCI CTTAAG 1 cut(s) 308
MspI CCGG 6 cut(s) 304, 765, 864, 1132, 1235, 1684
MspR9I CCNGG 5 cut(s) 828, 993, 1079, 1124, 1133
MvaI CCWGG 4 cut(s) 828, 993, 1079, 1124
MvnI CGCG 2 cut(s) 1445, 1622
MwoI GCNNNNNNNGC 7 cut(s) 1184, 1340, 1349, 1451, 1602, 1914, 2318
NaeI GCCGGC 1 cut(s) 305
NciI CCSGG 1 cut(s) 1133
NcoI CCATGG 1 cut(s) 878
NdeII GATC 9 cut(s) 27, 211, 458, 1063, 1642, 1792, 1852, 2062, 2389
NgoMIV GCCGGC 1 cut(s) 303
NlaIV GGNNCC 4 cut(s) 969, 1233, 2118, 2357
NmeAIII GCCGAG 2 cut(s) 778, 1565
NmuCI GTSAC 1 cut(s) 854
NsbI TGCGCA 1 cut(s) 1213
NspI RCATGY 2 cut(s) 923, 1637
NspV TTCGAA 1 cut(s) 1050
PaeR7I CTCGAG 2 cut(s) 433, 1013
PdiI GCCGGC 1 cut(s) 305
PdmI GAANNNNTTC 2 cut(s) 442, 1412
PflFI GACNNNGTC 1 cut(s) 628
PfoI TCCNGGA 1 cut(s) 991
PinAI ACCGGT 1 cut(s) 764
PkrI GCNGC 3 cut(s) 1333, 1598, 1919
PleI GAGTC 6 cut(s) 572, 593, 1127, 2043, 2103, 2375
PpsI GAGTC 6 cut(s) 572, 593, 1127, 2043, 2103, 2375
PsiI TTATAA 1 cut(s) 744
Psp6I CCWGG 4 cut(s) 826, 991, 1077, 1122
PspEI GGTNACC 1 cut(s) 138
PspFI CCCAGC 1 cut(s) 2187
PspGI CCWGG 4 cut(s) 826, 991, 1077, 1122
PspN4I GGNNCC 4 cut(s) 969, 1233, 2118, 2357
PspPI GGNCC 2 cut(s) 928, 2117
PstNI CAGNNNCTG 1 cut(s) 1373
PsuI RGATCY 1 cut(s) 211
PsyI GACNNNGTC 1 cut(s) 628
RsaI GTAC 5 cut(s) 584, 785, 837, 1688, 2351
RsaNI GTAC 5 cut(s) 583, 784, 836, 1687, 2350
RseI CAYNNNNRTG 5 cut(s) 89, 286, 1638, 1785, 2182
SatI GCNGC 3 cut(s) 1332, 1597, 1918
Sau3AI GATC 9 cut(s) 27, 211, 458, 1063, 1642, 1792, 1852, 2062, 2389
Sau96I GGNCC 2 cut(s) 928, 2117
ScaI AGTACT 1 cut(s) 2351
SchI GAGTC 6 cut(s) 572, 593, 1128, 2044, 2103, 2375
ScrFI CCNGG 5 cut(s) 828, 993, 1079, 1124, 1133
SduI GDGCHC 1 cut(s) 1607
SfaNI GCATC 3 cut(s) 1588, 2092, 2190
SfcI CTRYAG 1 cut(s) 2301
Sfr274I CTCGAG 2 cut(s) 433, 1013
SfuI TTCGAA 1 cut(s) 1050
SinI GGWCC 2 cut(s) 928, 2117
SlaI CTCGAG 2 cut(s) 433, 1013
SmiMI CAYNNNNRTG 5 cut(s) 89, 286, 1638, 1785, 2182
SmlI CTYRAG 3 cut(s) 308, 433, 1013
SmoI CTYRAG 3 cut(s) 308, 433, 1013
SpeI ACTAGT 3 cut(s) 1805, 1910, 2341
Sse9I AATT 6 cut(s) 162, 520, 1144, 1396, 1479, 2080
SspMI CTAG 8 cut(s) 102, 132, 197, 245, 872, 1806, 1911, 2342
StyD4I CCNGG 5 cut(s) 826, 991, 1077, 1122, 1131
StyI CCWWGG 3 cut(s) 878, 1761, 1942
TaaI ACNGT 6 cut(s) 361, 380, 630, 1544, 2253, 2411
TaiI ACGT 3 cut(s) 115, 241, 1893
TaqI TCGA 9 cut(s) 228, 268, 284, 434, 482, 1014, 1050, 1956, 2338
TaqII GACCGA 1 cut(s) 1942
TasI AATT 6 cut(s) 162, 520, 1144, 1396, 1479, 2080
TatI WGTACW 3 cut(s) 783, 835, 2349
TauI GCSGC 1 cut(s) 1920
TscAI CASTG 1 cut(s) 1825
TseFI GTSAC 1 cut(s) 854
TseI GCWGC 2 cut(s) 1331, 1596
Tsp45I GTSAC 1 cut(s) 854
TspGWI ACGGA 1 cut(s) 436
TspRI CASTG 1 cut(s) 1825
Tth111I GACNNNGTC 1 cut(s) 628
Vha464I CTTAAG 1 cut(s) 308
VpaK11BI GGWCC 2 cut(s) 928, 2117
XapI RAATTY 2 cut(s) 1144, 1396
XceI RCATGY 2 cut(s) 923, 1637
XcmI CCANNNNNNNNNTGG 1 cut(s) 285
XhoI CTCGAG 2 cut(s) 433, 1013
XmiI GTMKAC 1 cut(s) 363
XmnI GAANNNNTTC 2 cut(s) 442, 1412
XspI CTAG 8 cut(s) 102, 132, 197, 245, 872, 1806, 1911, 2342
ZrmI AGTACT 1 cut(s) 2351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.