Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8464965.1

Orthogroup ID

OG0003891

Physical Location & Seq

Genomic Coordinates Reverse (-)

1405 .. 1821

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8464965.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgcatgcagctaagaagcctaagctggatcaagaaagtaggatatacaaaataaaatattgggatccaagggatacttctccttgttgcccggtttcagaagataaggtgaacataaatgcatcttgcaggtcatctagtcatgtttcttccgcagtagttcagtcggggtcccgggagggtcataatgacaatggaactttagtcatgaatgctgaagcaaaggtggggcatgactgctattttgattttttccttaattgtatgtttgatgaacatgaaagcaagatgatggacatatcagatggctgtgataataaggctagcaccttcgatggtaataagttgtttggtgttgatcttggattacctcatcattcttcaaatacaccatcaatcagctgttcagaaacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008214 GO:0008276 GO:0009314 GO:0009416 GO:0009555 GO:0009628 GO:0009648 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010154 GO:0010216 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032451 GO:0032452 GO:0032453 GO:0032501 GO:0032502 GO:0034641 GO:0034647 GO:0034720 GO:0034721 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0048229 GO:0048316 GO:0048519 GO:0048523 GO:0048573 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FYRC FYRN JmjC JmjN zf-C5HC2

Protein Analysis

138

Amino Acids

15.24

Weight (kDa)

5.55

Isoelectric Point (pI)

54.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30810 AT1G30810 AT1G30810
fragaria_vesca	FvH4_3g11430 FvH4_3g11430 FvH4_3g11430 FvH4_3g11430 FvH4_3g11430 FvH4_3g11430
malus_domestica	MD00G1097500.v1.1 MD00G1097600.v1.1 MD10G1241100.v1.1
prunus_persica	Prupe.4G102200_v2.0.a1 Prupe.8G028600_v2.0.a1
pyrus_communis	pycom05g24710 pycom05g24730 pycom10g20210
rosa_chinensis	RchiOBHm_Chr5g0018371
rosa_laevigata	RLG00000032357
rosa_multiflora	Rmu_co8156140.1_g000001 Rmu_co8464965.1_g000001 Rmu_co8477901.1_g000001 Rmu_sc0004464.1_g000008 Rmu_sc0017459.1_g000002
rosa_roxburghii	Rroxscaffold_1G00059360
rosa_rugosa	Rorug05G0041900 Rorug05G0042000 Rorug05G0042000 Rorug05G0042100
rosa_samantha	Rh5AG135300 Rh5BG133900 Rh5CG145700 Rh5DG135300
rosa_wichuraiana	Rw5G011830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	120
AciI	CCGC	1 cut(s)	153
AclWI	GGATC	3 cut(s)	36, 59, 72
AcuI	CTGAAG	1 cut(s)	237
AgsI	TTSAA	1 cut(s)	384
AjuI	GAANNNNNNNTTGG	2 cut(s)	61, 93
AluBI	AGCT	3 cut(s)	11, 25, 402
AluI	AGCT	3 cut(s)	11, 25, 402
AlwI	GGATC	3 cut(s)	36, 59, 72
Ama87I	CYCGRG	1 cut(s)	174
ApeKI	GCWGC	1 cut(s)	8
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
AspS9I	GGNCC	1 cut(s)	171
AsuC2I	CCSGG	3 cut(s)	92, 175, 176
AsuHPI	GGTGA	1 cut(s)	121
AsuNHI	GCTAGC	1 cut(s)	323
AvaI	CYCGRG	1 cut(s)	174
AvaII	GGWCC	1 cut(s)	171
BamHI	GGATCC	1 cut(s)	64
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	4 cut(s)	286, 299, 329, 400
BciVI	GTATCC	1 cut(s)	67
BcnI	CCSGG	3 cut(s)	92, 175, 176
BfaI	CTAG	2 cut(s)	138, 324
BfuAI	ACCTGC	1 cut(s)	120
BfuI	GTATCC	1 cut(s)	67
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
Bme1390I	CCNGG	3 cut(s)	92, 175, 176
Bme18I	GGWCC	1 cut(s)	171
BmeT110I	CYCGRG	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	3 cut(s)	66, 172, 173
BmrFI	CCNGG	3 cut(s)	92, 175, 176
BmsI	GCATC	1 cut(s)	131
BmtI	GCTAGC	1 cut(s)	327
Bpu10I	CCTNAGC	1 cut(s)	21
BpuMI	CCSGG	3 cut(s)	92, 175, 176
BsaJI	CCNNGG	2 cut(s)	68, 174
BseDI	CCNNGG	2 cut(s)	68, 174
BseXI	GCAGC	1 cut(s)	20
BsiHKCI	CYCGRG	1 cut(s)	174
BsiSI	CCGG	2 cut(s)	92, 175
BslFI	GGGAC	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	157
BsmI	GAATGC	1 cut(s)	217
BsoBI	CYCGRG	1 cut(s)	174
Bsp143I	GATC	3 cut(s)	28, 64, 358
BspACI	CCGC	1 cut(s)	153
BspHI	TCATGA	1 cut(s)	207
BspLI	GGNNCC	3 cut(s)	66, 172, 173
BspMI	ACCTGC	1 cut(s)	120
BspOI	GCTAGC	1 cut(s)	327
BspPI	GGATC	3 cut(s)	36, 59, 72
BssECI	CCNNGG	2 cut(s)	68, 174
BssMI	GATC	3 cut(s)	28, 64, 358
BssT1I	CCWWGG	1 cut(s)	68
BstC8I	GCNNGC	2 cut(s)	6, 325
BstDEI	CTNAG	2 cut(s)	12, 21
BstKTI	GATC	3 cut(s)	31, 67, 361
BstMBI	GATC	3 cut(s)	28, 64, 358
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	3 cut(s)	90, 173, 174
BstV1I	GCAGC	1 cut(s)	20
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuI	GTATCC	1 cut(s)	67
BveI	ACCTGC	1 cut(s)	120
Cac8I	GCNNGC	2 cut(s)	6, 325
CciI	TCATGA	1 cut(s)	207
Cfr13I	GGNCC	1 cut(s)	171
Cfr9I	CCCGGG	1 cut(s)	174
CviAII	CATG	5 cut(s)	5, 143, 208, 233, 278
CviJI	RGCY	6 cut(s)	11, 19, 25, 309, 323, 402
CviKI_1	RGCY	6 cut(s)	11, 19, 25, 309, 323, 402
DdeI	CTNAG	2 cut(s)	12, 21
DpnI	GATC	3 cut(s)	30, 66, 360
DpnII	GATC	3 cut(s)	28, 64, 358
Eco130I	CCWWGG	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	237
Eco88I	CYCGRG	1 cut(s)	174
EcoO109I	RGGNCCY	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	68
EcoT22I	ATGCAT	2 cut(s)	6, 124
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	5 cut(s)	8, 146, 211, 236, 281
FalI	AAGNNNNNCTT	2 cut(s)	61, 93
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	5 cut(s)	4, 142, 207, 232, 277
Fnu4HI	GCNGC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	9
FspBI	CTAG	2 cut(s)	138, 324
GluI	GCNGC	1 cut(s)	9
HapII	CCGG	2 cut(s)	92, 175
Hin1II	CATG	5 cut(s)	8, 146, 211, 236, 281
HpaII	CCGG	2 cut(s)	92, 175
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	3 cut(s)	100, 304, 409
Hpy188III	TCNNGA	2 cut(s)	32, 208
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	1 cut(s)	340
HpyCH4V	TGCA	4 cut(s)	4, 8, 122, 129
HpyF3I	CTNAG	2 cut(s)	12, 21
Hsp92II	CATG	5 cut(s)	8, 146, 211, 236, 281
KflI	GGGWCCC	1 cut(s)	171
Kzo9I	GATC	3 cut(s)	28, 64, 358
LpnPI	CCDG	4 cut(s)	11, 105, 115, 188
Lsp1109I	GCAGC	1 cut(s)	20
LweI	GCATC	1 cut(s)	131
MaeI	CTAG	2 cut(s)	138, 324
MalI	GATC	3 cut(s)	30, 66, 360
MboI	GATC	3 cut(s)	28, 64, 358
MboII	GAAGA	3 cut(s)	113, 141, 372
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	1 cut(s)	259
MnlI	CCTC	2 cut(s)	172, 381
Mph1103I	ATGCAT	2 cut(s)	6, 124
MseI	TTAA	2 cut(s)	258, 415
MspA1I	CMGCKG	1 cut(s)	402
MspI	CCGG	2 cut(s)	92, 175
MspR9I	CCNGG	3 cut(s)	92, 175, 176
Mva1269I	GAATGC	1 cut(s)	217
NciI	CCSGG	3 cut(s)	92, 175, 176
NdeII	GATC	3 cut(s)	28, 64, 358
NheI	GCTAGC	1 cut(s)	323
NlaIII	CATG	5 cut(s)	8, 146, 211, 236, 281
NlaIV	GGNNCC	3 cut(s)	66, 172, 173
NsiI	ATGCAT	2 cut(s)	6, 124
NspI	RCATGY	1 cut(s)	8
PaeI	GCATGC	1 cut(s)	8
PagI	TCATGA	1 cut(s)	207
PctI	GAATGC	1 cut(s)	217
PkrI	GCNGC	1 cut(s)	10
PpuMI	RGGWCCY	1 cut(s)	171
Psp5II	RGGWCCY	1 cut(s)	171
PspN4I	GGNNCC	3 cut(s)	66, 172, 173
PspPI	GGNCC	1 cut(s)	171
PspPPI	RGGWCCY	1 cut(s)	171
PsuI	RGATCY	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	402
SaqAI	TTAA	2 cut(s)	258, 415
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	3 cut(s)	28, 64, 358
Sau96I	GGNCC	1 cut(s)	171
ScrFI	CCNGG	3 cut(s)	92, 175, 176
SetI	ASST	8 cut(s)	13, 27, 111, 134, 228, 332, 373, 404
SfaNI	GCATC	1 cut(s)	131
SinI	GGWCC	1 cut(s)	171
SmaI	CCCGGG	1 cut(s)	176
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	1 cut(s)	259
SsiI	CCGC	1 cut(s)	153
SspI	AATATT	1 cut(s)	59
SspMI	CTAG	2 cut(s)	138, 324
StyD4I	CCNGG	3 cut(s)	90, 173, 174
StyI	CCWWGG	1 cut(s)	68
TaqI	TCGA	1 cut(s)	333
TasI	AATT	1 cut(s)	259
Tru1I	TTAA	2 cut(s)	258, 415
Tru9I	TTAA	2 cut(s)	258, 415
TseI	GCWGC	1 cut(s)	8
TspDTI	ATGAA	3 cut(s)	224, 288, 294
TspMI	CCCGGG	1 cut(s)	174
VpaK11BI	GGWCC	1 cut(s)	171
XceI	RCATGY	1 cut(s)	8
XmaI	CCCGGG	1 cut(s)	174
XspI	CTAG	2 cut(s)	138, 324
Zsp2I	ATGCAT	2 cut(s)	6, 124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.