Rmu_co8156140.1_g000001

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8156140.1
OG0003891
Physical Location & Seq
Forward (+)
1 .. 527
527 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8156140.1_g000001.1.cds

Sequence Viewer

Length: 411 bp
gtcactcagctatctccttcagttttaaagtctgagggtgtacctgtgcatcgagctatccaacattctggggagtttgttcttacctttccgagggcatatcactctggatttaattgtggcttcaattgtgctgaggcagtaaatgtcgcccctgttgactggttgcaacatggccaaactgcagtcgagctttacagtaagcagtgtcgcaagacatcactgtcacacgacaaattgttactggggtcagctctggaagccgtgcaggtcctcggggaaatatcactcggaacaaaatttattaccaaccggagctggcaaaaagtttgtggcaaagatggtgtgctcaccaaagcagttaaggtaaaacctttccctccctctcccttttttctttctccagtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008214 GO:0008276 GO:0009314 GO:0009416 GO:0009555 GO:0009628 GO:0009648 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010154 GO:0010216 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032451 GO:0032452 GO:0032453 GO:0032501 GO:0032502 GO:0034641 GO:0034647 GO:0034720 GO:0034721 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0048229 GO:0048316 GO:0048519 GO:0048523 GO:0048573 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FYRC FYRN JmjC JmjN zf-C5HC2

Protein Analysis

136

Amino Acids

14.81

Weight (kDa)

9.19

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 223
Acc36I ACCTGC 1 cut(s) 259
AcoI YGGCCR 1 cut(s) 175
AcsI RAATTY 1 cut(s) 299
AfaI GTAC 1 cut(s) 42
AfiI CCNNNNNNNGG 1 cut(s) 93
AgsI TTSAA 1 cut(s) 127
AluBI AGCT 5 cut(s) 10, 56, 193, 254, 318
AluI AGCT 5 cut(s) 10, 56, 193, 254, 318
Alw21I GWGCWC 1 cut(s) 351
Ama87I CYCGRG 1 cut(s) 275
AoxI GGCC 1 cut(s) 175
ApoI RAATTY 1 cut(s) 299
AspS9I GGNCC 1 cut(s) 271
AsuHPI GGTGA 1 cut(s) 343
AvaI CYCGRG 1 cut(s) 275
AvaII GGWCC 1 cut(s) 271
BalI TGGCCA 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 351
BbvCI CCTCAGC 1 cut(s) 135
BccI CCATC 1 cut(s) 335
BceAI ACGGC 1 cut(s) 248
BfmI CTRYAG 1 cut(s) 183
BfuAI ACCTGC 1 cut(s) 259
Bme18I GGWCC 1 cut(s) 271
BmeT110I CYCGRG 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 271
BmrI ACTGGG 1 cut(s) 254
BmsI GCATC 1 cut(s) 58
BmuI ACTGGG 1 cut(s) 254
BpmI CTGGAG 1 cut(s) 387
Bpu10I CCTNAGC 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 92, 274
BsaWI WCCGGW 1 cut(s) 312
Bsc4I CCNNNNNNNGG 1 cut(s) 93
Bse1I ACTGG 3 cut(s) 167, 249, 404
BseDI CCNNGG 2 cut(s) 92, 274
BseLI CCNNNNNNNGG 1 cut(s) 93
BseMII CTCAG 3 cut(s) 20, 24, 126
BseNI ACTGG 3 cut(s) 167, 249, 404
BsgI GTGCAG 1 cut(s) 287
BshFI GGCC 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 351
BsiHKCI CYCGRG 1 cut(s) 275
BsiSI CCGG 1 cut(s) 313
BslI CCNNNNNNNGG 1 cut(s) 93
BsnI GGCC 1 cut(s) 177
BsoBI CYCGRG 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 351
BspANI GGCC 1 cut(s) 177
BspCNI CTCAG 3 cut(s) 19, 25, 127
BspMAI CTGCAG 1 cut(s) 187
BspMI ACCTGC 1 cut(s) 259
BsrI ACTGG 3 cut(s) 167, 249, 404
BssECI CCNNGG 2 cut(s) 92, 274
Bst4CI ACNGT 2 cut(s) 200, 225
BstC8I GCNNGC 1 cut(s) 320
BstDEI CTNAG 3 cut(s) 6, 33, 135
BstENI CCTNNNNNAGG 1 cut(s) 91
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstSFI CTRYAG 1 cut(s) 183
BstXI CCANNNNNNTGG 1 cut(s) 68
BsuRI GGCC 1 cut(s) 177
BtsI GCAGTG 1 cut(s) 212
BtsIMutI CAGTG 3 cut(s) 212, 221, 411
BveI ACCTGC 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 320
Cfr13I GGNCC 1 cut(s) 271
Csp6I GTAC 1 cut(s) 41
CviAII CATG 1 cut(s) 173
CviJI RGCY 8 cut(s) 10, 56, 123, 177, 193, 254, 263, 318
CviKI_1 RGCY 8 cut(s) 10, 56, 123, 177, 193, 254, 263, 318
CviQI GTAC 1 cut(s) 41
DdeI CTNAG 3 cut(s) 6, 33, 135
DraI TTTAAA 1 cut(s) 27
DrdI GACNNNNNNGTC 1 cut(s) 223
DseDI GACNNNNNNGTC 1 cut(s) 223
EaeI YGGCCR 1 cut(s) 175
Eco47I GGWCC 1 cut(s) 271
Eco88I CYCGRG 1 cut(s) 275
EcoNI CCTNNNNNAGG 1 cut(s) 91
EcoO109I RGGNCCY 1 cut(s) 271
FaeI CATG 1 cut(s) 176
FaiI YATR 2 cut(s) 100, 174
FatI CATG 1 cut(s) 172
GsuI CTGGAG 1 cut(s) 387
HaeIII GGCC 1 cut(s) 177
HapII CCGG 1 cut(s) 313
Hin1II CATG 1 cut(s) 176
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HpaII CCGG 1 cut(s) 313
HphI GGTGA 1 cut(s) 343
Hpy166II GTNNAC 2 cut(s) 41, 160
Hpy188I TCNGA 3 cut(s) 34, 93, 293
Hpy188III TCNNGA 2 cut(s) 108, 257
Hpy8I GTNNAC 2 cut(s) 41, 160
HpyAV CCTTC 1 cut(s) 27
HpyCH4III ACNGT 2 cut(s) 200, 225
HpyCH4V TGCA 4 cut(s) 49, 169, 185, 268
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 3 cut(s) 6, 33, 135
Hsp92II CATG 1 cut(s) 176
LmnI GCTCC 1 cut(s) 315
LweI GCATC 1 cut(s) 58
MaeIII GTNAC 2 cut(s) 225, 240
MfeI CAATTG 1 cut(s) 127
MhlI GDGCHC 1 cut(s) 351
MlsI TGGCCA 1 cut(s) 177
MluCI AATT 4 cut(s) 115, 127, 236, 299
MluNI TGGCCA 1 cut(s) 177
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 6 cut(s) 28, 87, 130, 284, 390, 394
Mox20I TGGCCA 1 cut(s) 177
MscI TGGCCA 1 cut(s) 177
MseI TTAA 3 cut(s) 26, 114, 363
Msp20I TGGCCA 1 cut(s) 177
MspI CCGG 1 cut(s) 313
MunI CAATTG 1 cut(s) 127
MwoI GCNNNNNNNGC 1 cut(s) 260
NlaIII CATG 1 cut(s) 176
NmuCI GTSAC 1 cut(s) 225
PpuMI RGGWCCY 1 cut(s) 271
Psp5II RGGWCCY 1 cut(s) 271
PspPI GGNCC 1 cut(s) 271
PspPPI RGGWCCY 1 cut(s) 271
PstI CTGCAG 1 cut(s) 187
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
SaqAI TTAA 3 cut(s) 26, 114, 363
Sau96I GGNCC 1 cut(s) 271
SduI GDGCHC 1 cut(s) 351
SfaNI GCATC 1 cut(s) 58
SfcI CTRYAG 1 cut(s) 183
SinI GGWCC 1 cut(s) 271
Sse9I AATT 4 cut(s) 115, 127, 236, 299
TaaI ACNGT 2 cut(s) 200, 225
TaqI TCGA 2 cut(s) 52, 189
TasI AATT 4 cut(s) 115, 127, 236, 299
Tru1I TTAA 3 cut(s) 26, 114, 363
Tru9I TTAA 3 cut(s) 26, 114, 363
TscAI CASTG 3 cut(s) 212, 228, 411
TseFI GTSAC 1 cut(s) 225
Tsp45I GTSAC 1 cut(s) 225
TspRI CASTG 3 cut(s) 212, 228, 411
VpaK11BI GGWCC 1 cut(s) 271
XagI CCTNNNNNAGG 1 cut(s) 91
XapI RAATTY 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.