Rorug05G0042100

lysine-specific demethylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003891
Physical Location & Seq
Reverse (-)
3652404 .. 3653540
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0042100.1

Sequence Viewer

Length: 924 bp
ATGTCGACGACTCCAACTCGTCTTCTTCTCAAACAAGCCCTGATCGATTCCGTCCAGATCACCCTGAGAAACAAGCAAACATTTCTTTCCATTTTTGCCCTCACGACCCTCCCTCTCTCCCTCCTCCTCTTCTCCCTCTCCCTCTCCTCCCACCCCCTCAAATCCCACGTCTTCCGTCTCGAGTCCCTCGCCTCCCAAGCCCCCACGCGCTTCGAGGCCCGCCAGGTCTGGAAGGAGTCCCGCGACGACGCCGTTTCGCTCTTCCGCATCAAGCTCCTCTACTTCCTCCCCTCCTGCCTCTTCTCCCTCACCGCCTCCGTCACCGCCGTTACCGCCACCTCATCAGCCTATCACGGAAGATCCCCAAATCTCCGTTCCTCACTCGCCGCCGTCAAGTCAAACTGGAGCAGACCCTTGGCCACCAGCGTCTGCATCTACGCGCTCCTCATCGCGTACGCCCTCGTCCCTCGCACTTTGGCCGCCGCGGTATTCGCCTCGTCCGGGTCCCGATTTTTCATCCGGATTATCGGGTCGGGTCTGGAGATCTACTTGATGGCGGTTATGGGGCTTGGCCTGGTTGTCTCGATCCTGGAGGAGAGGTACGGCTGGGAAGCGATCCGGGTCGGGTCGGATCTGATGGCGGGTAAGAGGCTGTGCGGGTGGGTGTTGTCGGGTTCGTTCGTGATGGTTACGGCGGTGATTGCAAGGAAGCTGGAGGATGTGATGGACGGTCAGGATTTGATGGAGCAGTCGTCGACGGGAACAATGACGAGAGTCGTCGTGGGTATTGAGGAGAAATTTGGGTGGGTGATTTTGTATGGGTTGGTTGCGCTTTGGGGGTATGTTGTTACCTCGGTTTTTTACTGCGAGTGTAGGAAACACCATGTAATTGTAAGTAATGAAAATGAGAATGACACGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006482 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008214 GO:0008276 GO:0009314 GO:0009416 GO:0009555 GO:0009628 GO:0009648 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0009987 GO:0010154 GO:0010216 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016577 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032451 GO:0032452 GO:0032453 GO:0032501 GO:0032502 GO:0034641 GO:0034647 GO:0034720 GO:0034721 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0048229 GO:0048316 GO:0048519 GO:0048523 GO:0048573 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FYRC FYRN JmjC JmjN zf-C5HC2

Protein Analysis

307

Amino Acids

33.88

Weight (kDa)

9.24

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 5, 755
AccII CGCG 5 cut(s) 208, 243, 440, 452, 485
AccIII TCCGGA 1 cut(s) 519
AclWI GGATC 4 cut(s) 354, 580, 610, 639
AcoI YGGCCR 2 cut(s) 417, 477
AcsI RAATTY 1 cut(s) 797
AcyI GRCGYC 1 cut(s) 249
AfaI GTAC 2 cut(s) 455, 602
AfiI CCNNNNNNNGG 1 cut(s) 501
AjiI CACGTC 1 cut(s) 169
AjnI CCWGG 3 cut(s) 222, 573, 588
AjuI GAANNNNNNNTTGG 2 cut(s) 358, 390
AluBI AGCT 2 cut(s) 274, 712
AluI AGCT 2 cut(s) 274, 712
Alw26I GTCTC 2 cut(s) 182, 586
AlwI GGATC 4 cut(s) 354, 580, 610, 639
AlwNI CAGNNNCTG 1 cut(s) 429
Ama87I CYCGRG 1 cut(s) 179
Aor13HI TCCGGA 1 cut(s) 519
AoxI GGCC 4 cut(s) 216, 417, 477, 571
ApoI RAATTY 1 cut(s) 797
ArsI GACNNNNNNTTYG 2 cut(s) 153, 185
AspLEI GCGC 3 cut(s) 210, 442, 832
AspS9I GGNCC 2 cut(s) 217, 504
AsuC2I CCSGG 2 cut(s) 502, 620
AsuHPI GGTGA 5 cut(s) 52, 301, 313, 709, 820
AvaI CYCGRG 1 cut(s) 179
AvaII GGWCC 1 cut(s) 504
BalI TGGCCA 1 cut(s) 419
BbsI GAAGAC 2 cut(s) 14, 163
BccI CCATC 5 cut(s) 547, 631, 679, 718, 736
BceAI ACGGC 5 cut(s) 236, 311, 374, 619, 708
BciT130I CCWGG 3 cut(s) 224, 575, 590
BcnI CCSGG 2 cut(s) 502, 620
BcoDI GTCTC 2 cut(s) 182, 586
BglII AGATCT 1 cut(s) 543
BisI GCNGC 3 cut(s) 387, 480, 483
BlsI GCNGC 3 cut(s) 388, 481, 484
Bme1390I CCNGG 5 cut(s) 224, 502, 575, 590, 620
Bme18I GGWCC 1 cut(s) 504
BmeT110I CYCGRG 1 cut(s) 179
BmgBI CACGTC 1 cut(s) 169
BmgT120I GGNCC 2 cut(s) 217, 504
BmiI GGNNCC 2 cut(s) 505, 506
BmrFI CCNGG 5 cut(s) 224, 502, 575, 590, 620
BmsI GCATC 2 cut(s) 276, 441
BoxI GACNNNNGTC 1 cut(s) 773
BpiI GAAGAC 2 cut(s) 14, 163
BpmI CTGGAG 4 cut(s) 424, 560, 611, 734
BpuMI CCSGG 2 cut(s) 502, 620
Bsa29I ATCGAT 1 cut(s) 45
BsaHI GRCGYC 1 cut(s) 249
BsaJI CCNNGG 3 cut(s) 414, 483, 852
BsaWI WCCGGW 1 cut(s) 519
BsaXI ACNNNNNCTCC 4 cut(s) 584, 614, 737, 767
Bsc4I CCNNNNNNNGG 1 cut(s) 501
Bse1I ACTGG 1 cut(s) 407
BseAI TCCGGA 1 cut(s) 519
BseBI CCWGG 3 cut(s) 224, 575, 590
BseCI ATCGAT 1 cut(s) 45
BseDI CCNNGG 3 cut(s) 414, 483, 852
BseGI GGATG 2 cut(s) 516, 724
BseLI CCNNNNNNNGG 1 cut(s) 501
BseMII CTCAG 1 cut(s) 56
BseNI ACTGG 1 cut(s) 407
BseRI GAGGAG 7 cut(s) 113, 116, 136, 266, 434, 608, 806
BseYI CCCAGC 1 cut(s) 606
Bsh1236I CGCG 5 cut(s) 208, 243, 440, 452, 485
BshFI GGCC 4 cut(s) 218, 419, 479, 573
BshVI ATCGAT 1 cut(s) 45
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 3 cut(s) 501, 520, 619
BsiWI CGTACG 1 cut(s) 453
BslFI GGGAC 4 cut(s) 169, 223, 449, 490
BslI CCNNNNNNNGG 1 cut(s) 501
BsmAI GTCTC 2 cut(s) 182, 586
BsmBI CGTCTC 1 cut(s) 182
BsmFI GGGAC 4 cut(s) 169, 223, 449, 490
BsnI GGCC 4 cut(s) 218, 419, 479, 573
BsoBI CYCGRG 1 cut(s) 179
Bsp13I TCCGGA 1 cut(s) 519
Bsp143I GATC 7 cut(s) 42, 57, 359, 543, 585, 615, 631
BspANI GGCC 4 cut(s) 218, 419, 479, 573
BspCNI CTCAG 1 cut(s) 57
BspDI ATCGAT 1 cut(s) 45
BspEI TCCGGA 1 cut(s) 519
BspFNI CGCG 5 cut(s) 208, 243, 440, 452, 485
BspLI GGNNCC 2 cut(s) 505, 506
BspPI GGATC 4 cut(s) 354, 580, 610, 639
BspQI GCTCTTC 1 cut(s) 266
BsrI ACTGG 1 cut(s) 407
BssECI CCNNGG 3 cut(s) 414, 483, 852
BssMI GATC 7 cut(s) 42, 57, 359, 543, 585, 615, 631
BssNI GRCGYC 1 cut(s) 249
BssT1I CCWWGG 1 cut(s) 414
Bst2UI CCWGG 3 cut(s) 224, 575, 590
Bst4CI ACNGT 2 cut(s) 731, 919
Bst6I CTCTTC 3 cut(s) 134, 266, 305
BstACI GRCGYC 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 1 cut(s) 65
BstDSI CCRYGG 1 cut(s) 483
BstF5I GGATG 2 cut(s) 516, 724
BstFNI CGCG 5 cut(s) 208, 243, 440, 452, 485
BstHHI GCGC 3 cut(s) 210, 442, 832
BstKTI GATC 7 cut(s) 45, 60, 362, 546, 588, 618, 634
BstMAI GTCTC 2 cut(s) 182, 586
BstMBI GATC 7 cut(s) 42, 57, 359, 543, 585, 615, 631
BstMWI GCNNNNNNNGC 4 cut(s) 197, 332, 491, 701
BstNI CCWGG 3 cut(s) 224, 575, 590
BstPAI GACNNNNGTC 1 cut(s) 773
BstSCI CCNGG 5 cut(s) 222, 500, 573, 588, 618
BstUI CGCG 5 cut(s) 208, 243, 440, 452, 485
BstV2I GAAGAC 2 cut(s) 14, 163
BstX2I RGATCY 3 cut(s) 359, 543, 631
BstYI RGATCY 3 cut(s) 359, 543, 631
Bsu15I ATCGAT 1 cut(s) 45
BsuRI GGCC 4 cut(s) 218, 419, 479, 573
BsuTUI ATCGAT 1 cut(s) 45
BtgI CCRYGG 1 cut(s) 483
BtgZI GCGATG 1 cut(s) 433
BtrI CACGTC 1 cut(s) 169
BtsCI GGATG 2 cut(s) 516, 724
Cac8I GCNNGC 1 cut(s) 220
CaiI CAGNNNCTG 1 cut(s) 429
CfoI GCGC 3 cut(s) 210, 442, 832
Cfr13I GGNCC 2 cut(s) 217, 504
Cfr42I CCGCGG 1 cut(s) 486
ClaI ATCGAT 1 cut(s) 45
CseI GACGC 2 cut(s) 257, 415
Csp6I GTAC 2 cut(s) 454, 601
CviAII CATG 1 cut(s) 884
CviQI GTAC 2 cut(s) 454, 601
DdeI CTNAG 1 cut(s) 65
DpnI GATC 7 cut(s) 44, 59, 361, 545, 587, 617, 633
DpnII GATC 7 cut(s) 42, 57, 359, 543, 585, 615, 631
EaeI YGGCCR 2 cut(s) 417, 477
Eam1104I CTCTTC 3 cut(s) 134, 266, 305
EarI CTCTTC 3 cut(s) 134, 266, 305
Eco130I CCWWGG 1 cut(s) 414
Eco47I GGWCC 1 cut(s) 504
Eco88I CYCGRG 1 cut(s) 179
EcoO109I RGGNCCY 1 cut(s) 504
EcoRII CCWGG 3 cut(s) 222, 573, 588
EcoT14I CCWWGG 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 414
Esp3I CGTCTC 1 cut(s) 182
FaeI CATG 1 cut(s) 887
FaiI YATR 4 cut(s) 563, 819, 843, 885
FaqI GGGAC 4 cut(s) 169, 223, 449, 490
FatI CATG 1 cut(s) 883
FauI CCCGC 4 cut(s) 227, 248, 634, 650
FblI GTMKAC 2 cut(s) 5, 755
Fnu4HI GCNGC 3 cut(s) 387, 480, 483
FokI GGATG 2 cut(s) 503, 731
Fsp4HI GCNGC 3 cut(s) 387, 480, 483
GlaI GCGC 3 cut(s) 209, 441, 831
GluI GCNGC 3 cut(s) 387, 480, 483
GsaI CCCAGC 1 cut(s) 610
GsuI CTGGAG 4 cut(s) 424, 560, 611, 734
HaeIII GGCC 4 cut(s) 218, 419, 479, 573
HapII CCGG 3 cut(s) 501, 520, 619
HgaI GACGC 2 cut(s) 257, 415
HhaI GCGC 3 cut(s) 210, 442, 832
Hin1I GRCGYC 1 cut(s) 249
Hin1II CATG 1 cut(s) 887
Hin6I GCGC 3 cut(s) 208, 440, 830
HinP1I GCGC 3 cut(s) 208, 440, 830
HincII GTYRAC 2 cut(s) 6, 756
HindII GTYRAC 2 cut(s) 6, 756
HinfI GANTC 5 cut(s) 10, 47, 182, 236, 774
HpaII CCGG 3 cut(s) 501, 520, 619
HphI GGTGA 5 cut(s) 52, 301, 313, 709, 820
Hpy166II GTNNAC 2 cut(s) 6, 756
Hpy188I TCNGA 2 cut(s) 631, 636
Hpy8I GTNNAC 2 cut(s) 6, 756
Hpy99I CGWCG 6 cut(s) 10, 248, 251, 757, 760, 782
HpyAV CCTTC 1 cut(s) 226
HpyCH4III ACNGT 2 cut(s) 731, 919
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 2 cut(s) 432, 704
HpyF10VI GCNNNNNNNGC 4 cut(s) 197, 332, 491, 701
HpyF3I CTNAG 1 cut(s) 65
HpySE526I ACGT 1 cut(s) 168
Hsp92I GRCGYC 1 cut(s) 249
Hsp92II CATG 1 cut(s) 887
HspAI GCGC 3 cut(s) 208, 440, 830
KflI GGGWCCC 1 cut(s) 504
Kpn2I TCCGGA 1 cut(s) 519
KspI CCGCGG 1 cut(s) 486
Kzo9I GATC 7 cut(s) 42, 57, 359, 543, 585, 615, 631
LguI GCTCTTC 1 cut(s) 266
LmnI GCTCC 4 cut(s) 279, 405, 447, 745
LweI GCATC 2 cut(s) 276, 441
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 4 cut(s) 319, 328, 688, 847
MalI GATC 7 cut(s) 44, 59, 361, 545, 587, 617, 633
MboI GATC 7 cut(s) 42, 57, 359, 543, 585, 615, 631
MboII GAAGA 7 cut(s) 14, 17, 121, 163, 253, 292, 369
MflI RGATCY 3 cut(s) 359, 543, 631
MlsI TGGCCA 1 cut(s) 419
MluCI AATT 2 cut(s) 797, 888
MluNI TGGCCA 1 cut(s) 419
MlyI GAGTC 4 cut(s) 4, 191, 245, 783
MmeI TCCRAC 2 cut(s) 38, 609
Mox20I TGGCCA 1 cut(s) 419
MroI TCCGGA 1 cut(s) 519
MscI TGGCCA 1 cut(s) 419
Msp20I TGGCCA 1 cut(s) 419
MspA1I CMGCKG 1 cut(s) 485
MspI CCGG 3 cut(s) 501, 520, 619
MspR9I CCNGG 5 cut(s) 224, 502, 575, 590, 620
MvaI CCWGG 3 cut(s) 224, 575, 590
MvnI CGCG 5 cut(s) 208, 243, 440, 452, 485
MwoI GCNNNNNNNGC 4 cut(s) 197, 332, 491, 701
NciI CCSGG 2 cut(s) 502, 620
NdeII GATC 7 cut(s) 42, 57, 359, 543, 585, 615, 631
NlaIII CATG 1 cut(s) 887
NlaIV GGNNCC 2 cut(s) 505, 506
NmuCI GTSAC 1 cut(s) 319
PaeR7I CTCGAG 1 cut(s) 179
PciSI GCTCTTC 1 cut(s) 266
PfeI GAWTC 1 cut(s) 47
Pfl23II CGTACG 1 cut(s) 453
PflFI GACNNNGTC 1 cut(s) 917
PfoI TCCNGGA 1 cut(s) 588
PkrI GCNGC 3 cut(s) 388, 481, 484
PleI GAGTC 4 cut(s) 4, 190, 244, 782
PpsI GAGTC 4 cut(s) 4, 190, 244, 782
PpuMI RGGWCCY 1 cut(s) 504
PshAI GACNNNNGTC 1 cut(s) 773
Psp5II RGGWCCY 1 cut(s) 504
Psp6I CCWGG 3 cut(s) 222, 573, 588
PspFI CCCAGC 1 cut(s) 606
PspGI CCWGG 3 cut(s) 222, 573, 588
PspLI CGTACG 1 cut(s) 453
PspN4I GGNNCC 2 cut(s) 505, 506
PspPI GGNCC 2 cut(s) 217, 504
PspPPI RGGWCCY 1 cut(s) 504
PstNI CAGNNNCTG 1 cut(s) 429
PsuI RGATCY 3 cut(s) 359, 543, 631
PsyI GACNNNGTC 1 cut(s) 917
RsaI GTAC 2 cut(s) 455, 602
RsaNI GTAC 2 cut(s) 454, 601
SacII CCGCGG 1 cut(s) 486
SalI GTCGAC 2 cut(s) 4, 754
SapI GCTCTTC 1 cut(s) 266
SatI GCNGC 3 cut(s) 387, 480, 483
Sau3AI GATC 7 cut(s) 42, 57, 359, 543, 585, 615, 631
Sau96I GGNCC 2 cut(s) 217, 504
SchI GAGTC 4 cut(s) 4, 191, 245, 783
ScrFI CCNGG 5 cut(s) 224, 502, 575, 590, 620
SetI ASST 7 cut(s) 171, 228, 276, 341, 602, 714, 854
SfaNI GCATC 2 cut(s) 276, 441
Sfr274I CTCGAG 1 cut(s) 179
Sfr303I CCGCGG 1 cut(s) 486
SgrBI CCGCGG 1 cut(s) 486
SgrDI CGTCGACG 1 cut(s) 754
SinI GGWCC 1 cut(s) 504
SlaI CTCGAG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 2 cut(s) 797, 888
StyD4I CCNGG 5 cut(s) 222, 500, 573, 588, 618
StyI CCWWGG 1 cut(s) 414
TaaI ACNGT 2 cut(s) 731, 919
TaiI ACGT 1 cut(s) 171
TaqI TCGA 6 cut(s) 5, 45, 180, 213, 584, 755
TasI AATT 2 cut(s) 797, 888
TauI GCSGC 3 cut(s) 389, 482, 485
TfiI GAWTC 1 cut(s) 47
TseFI GTSAC 1 cut(s) 319
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 2 cut(s) 505, 915
TspGWI ACGGA 5 cut(s) 40, 164, 307, 362, 369
Tth111I GACNNNGTC 1 cut(s) 917
VpaK11BI GGWCC 1 cut(s) 504
XapI RAATTY 1 cut(s) 797
XhoI CTCGAG 1 cut(s) 179
XmiI GTMKAC 2 cut(s) 5, 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.