Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003817

Physical Location & Seq

Genomic Coordinates Reverse (-)

11122604 .. 11124220

Gene Structure 1617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G31160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCTGTCACTTCTTCCTCTATGCTGCTGCTTCGGAACTTCTCTACGGTGGGAAGAGTTGCTCAATCTGTTCGTGTGACTTCGAGGATCTTCTTCTCCACCGGAGAATTGATTAGGGTTCTTCCTTATACTCGTTCTAAAAGATTGATCTGTTCTACTCGTGCTGCTCATAATGAAGAAGCCGCCGCGAAAGCTGCGGCTTCTGTTGCTGACACCGGAGCTCCGACCATATTTGACAAGATTATAGCAAAAGAGATTCCCTCAGATATTGTCTATGAAGATGAAAACGTTTTGGCATTCAGAGACATTAACCCTCAGGCTCCTGTTCATGTTTTGGTCATTCCCAAGTTGAGAGATGGCTTGACCTCGCTTGGCAAGGCTGAACCAAGACACGTAGAGGTTCTTGGCCAACTTCTACATGCATCGAAGATTGTTGCTGAGAAAGAAGGAATCCTTGATGGGTTCCGTGTGGTTATCAACAACGGTGTTGAAGCCTGCCAATCTGTTTACCATCTTCATCTGCACGTCCTCGGAGGCCGACAGATGAAATGGCCACCCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIT

Protein Analysis

187

Amino Acids

20.4

Weight (kDa)

9.23

Isoelectric Point (pI)

32.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DcpS_C	PF11969	76 - 178	8e-26	Scavenger mRNA decapping enzyme C-term binding
HIT	PF01230	84 - 181	2.4e-27	HIT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31160 AT1G31160
fragaria_vesca	FvH4_3g12440 FvH4_3g12440
malus_domestica	MD05G1250300.v1.1 MD09G1212000.v1.1 MD15G1229700.v1.1
prunus_persica	Prupe.4G113300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0020321 RchiOBHm_Chr6g0275781
rosa_laevigata	RLG00000032517
rosa_multiflora	Rmu_sc0002087.1_g000003 Rmu_sc0005654.1_g000009 Rmu_sc0007157.1_g000005
rosa_roxburghii	Rroxscaffold_1G00057890 Rroxscaffold_5G00358390
rosa_rugosa	Rorug04G0039600 Rorug04G0039700 Rorug04G0039800 Rorug05G0058700 Rorug05G0326900 Rorug06G0016000 Rorug07G0326200
rosa_samantha	Rh2AG345500 Rh5AG148900 Rh5BG148600 Rh5BG191100 Rh5CG160100 Rh5CG567500 Rh5DG147300 Rh6DG204100
rosa_wichuraiana	Rw2G009030 Rw4G021020 Rw5G013200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	188
AciI	CCGC	3 cut(s)	183, 186, 197
AclI	AACGTT	1 cut(s)	288
AclWI	GGATC	1 cut(s)	95
AcoI	YGGCCR	2 cut(s)	406, 551
AflIII	ACRYGT	1 cut(s)	391
AgsI	TTSAA	1 cut(s)	491
AjiI	CACGTC	1 cut(s)	526
AluBI	AGCT	2 cut(s)	194, 221
AluI	AGCT	2 cut(s)	194, 221
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	1 cut(s)	297
AlwI	GGATC	1 cut(s)	95
AoxI	GGCC	3 cut(s)	406, 535, 551
ApeKI	GCWGC	4 cut(s)	25, 28, 164, 194
AsuC2I	CCSGG	1 cut(s)	558
AxyI	CCTNAGG	1 cut(s)	315
BalI	TGGCCA	2 cut(s)	408, 553
BanII	GRGCYC	1 cut(s)	223
BauI	CACGAG	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	4 cut(s)	12, 15, 151, 181
BccI	CCATC	3 cut(s)	350, 452, 519
BcnI	CCSGG	1 cut(s)	558
BcoDI	GTCTC	1 cut(s)	297
BisI	GCNGC	7 cut(s)	26, 29, 165, 183, 186, 195, 198
BlsI	GCNGC	7 cut(s)	27, 30, 166, 184, 187, 196, 199
Bme1390I	CCNGG	1 cut(s)	558
BmgBI	CACGTC	1 cut(s)	526
BmiI	GGNNCC	2 cut(s)	321, 464
BmrFI	CCNGG	1 cut(s)	558
BmsI	GCATC	1 cut(s)	431
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
BpuMI	CCSGG	1 cut(s)	558
BsaAI	YACGTR	1 cut(s)	394
BsaJI	CCNNGG	1 cut(s)	529
BsaWI	WCCGGW	2 cut(s)	101, 215
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bse21I	CCTNAGG	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	529
BseMII	CTCAG	3 cut(s)	276, 329, 429
BseXI	GCAGC	4 cut(s)	12, 15, 151, 181
BsgI	GTGCAG	1 cut(s)	506
Bsh1236I	CGCG	1 cut(s)	188
BshFI	GGCC	3 cut(s)	408, 537, 553
BsiHKAI	GWGCWC	1 cut(s)	223
BsiSI	CCGG	3 cut(s)	102, 216, 558
BsmAI	GTCTC	1 cut(s)	297
BsmI	GAATGC	1 cut(s)	296
BsnI	GGCC	3 cut(s)	408, 537, 553
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	2 cut(s)	87, 147
BspACI	CCGC	3 cut(s)	183, 186, 197
BspANI	GGCC	3 cut(s)	408, 537, 553
BspCNI	CTCAG	3 cut(s)	275, 328, 430
BspFNI	CGCG	1 cut(s)	188
BspLI	GGNNCC	2 cut(s)	321, 464
BspPI	GGATC	1 cut(s)	95
BssECI	CCNNGG	1 cut(s)	529
BssMI	GATC	2 cut(s)	87, 147
BssSI	CACGAG	1 cut(s)	159
Bst2BI	CACGAG	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	49, 485
Bst6I	CTCTTC	1 cut(s)	49
BstBAI	YACGTR	1 cut(s)	394
BstC8I	GCNNGC	1 cut(s)	496
BstDEI	CTNAG	3 cut(s)	262, 315, 438
BstFNI	CGCG	1 cut(s)	188
BstKTI	GATC	2 cut(s)	90, 150
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	2 cut(s)	87, 147
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 194, 206
BstNSI	RCATGY	1 cut(s)	422
BstSCI	CCNGG	1 cut(s)	556
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	4 cut(s)	12, 15, 151, 181
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
Bsu36I	CCTNAGG	1 cut(s)	315
BsuRI	GGCC	3 cut(s)	408, 537, 553
BtrI	CACGTC	1 cut(s)	526
Cac8I	GCNNGC	1 cut(s)	496
CviAII	CATG	2 cut(s)	329, 419
DdeI	CTNAG	3 cut(s)	262, 315, 438
DpnI	GATC	2 cut(s)	89, 149
DpnII	GATC	2 cut(s)	87, 147
EaeI	YGGCCR	2 cut(s)	406, 551
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
Ecl136II	GAGCTC	1 cut(s)	221
Eco24I	GRGCYC	1 cut(s)	223
Eco53kI	GAGCTC	1 cut(s)	221
Eco81I	CCTNAGG	1 cut(s)	315
EcoICRI	GAGCTC	1 cut(s)	221
EcoT22I	ATGCAT	1 cut(s)	424
EcoT38I	GRGCYC	1 cut(s)	223
FaeI	CATG	2 cut(s)	332, 422
FaiI	YATR	8 cut(s)	23, 129, 171, 230, 245, 276, 330, 420
FalI	AAGNNNNNCTT	2 cut(s)	438, 470
FatI	CATG	2 cut(s)	328, 418
Fnu4HI	GCNGC	7 cut(s)	26, 29, 165, 183, 186, 195, 198
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	7 cut(s)	26, 29, 165, 183, 186, 195, 198
GluI	GCNGC	7 cut(s)	26, 29, 165, 183, 186, 195, 198
HaeIII	GGCC	3 cut(s)	408, 537, 553
HapII	CCGG	3 cut(s)	102, 216, 558
Hin1II	CATG	2 cut(s)	332, 422
HinfI	GANTC	2 cut(s)	256, 450
HpaII	CCGG	3 cut(s)	102, 216, 558
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188I	TCNGA	5 cut(s)	36, 225, 265, 302, 533
Hpy8I	GTNNAC	1 cut(s)	508
HpyAV	CCTTC	1 cut(s)	440
HpyCH4III	ACNGT	2 cut(s)	49, 485
HpyCH4IV	ACGT	3 cut(s)	288, 393, 525
HpyCH4V	TGCA	2 cut(s)	422, 523
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 194, 206
HpyF3I	CTNAG	3 cut(s)	262, 315, 438
HpySE526I	ACGT	3 cut(s)	288, 393, 525
Hsp92II	CATG	2 cut(s)	332, 422
Kzo9I	GATC	2 cut(s)	87, 147
LmnI	GCTCC	3 cut(s)	218, 226, 325
LpnPI	CCDG	5 cut(s)	115, 229, 302, 336, 508
Lsp1109I	GCAGC	4 cut(s)	12, 15, 151, 181
LweI	GCATC	1 cut(s)	431
MaeII	ACGT	3 cut(s)	288, 393, 525
MaeIII	GTNAC	2 cut(s)	7, 76
MalI	GATC	2 cut(s)	89, 149
MboI	GATC	2 cut(s)	87, 147
MboII	GAAGA	9 cut(s)	6, 66, 82, 85, 113, 188, 290, 439, 506
MflI	RGATCY	1 cut(s)	87
MhlI	GDGCHC	1 cut(s)	223
MlsI	TGGCCA	2 cut(s)	408, 553
MluCI	AATT	1 cut(s)	107
MluNI	TGGCCA	2 cut(s)	408, 553
MmeI	TCCRAC	1 cut(s)	248
MnlI	CCTC	8 cut(s)	28, 78, 271, 324, 376, 391, 527, 539
Mox20I	TGGCCA	2 cut(s)	408, 553
Mph1103I	ATGCAT	1 cut(s)	424
MscI	TGGCCA	2 cut(s)	408, 553
MseI	TTAA	2 cut(s)	309, 562
Msp20I	TGGCCA	2 cut(s)	408, 553
MspI	CCGG	3 cut(s)	102, 216, 558
MspR9I	CCNGG	1 cut(s)	558
Mva1269I	GAATGC	1 cut(s)	296
MvnI	CGCG	1 cut(s)	188
MwoI	GCNNNNNNNGC	3 cut(s)	191, 194, 206
NciI	CCSGG	1 cut(s)	558
NdeII	GATC	2 cut(s)	87, 147
NlaIII	CATG	2 cut(s)	332, 422
NlaIV	GGNNCC	2 cut(s)	321, 464
NmuCI	GTSAC	2 cut(s)	7, 76
NsiI	ATGCAT	1 cut(s)	424
NspI	RCATGY	1 cut(s)	422
PctI	GAATGC	1 cut(s)	296
PfeI	GAWTC	2 cut(s)	256, 450
PkrI	GCNGC	7 cut(s)	27, 30, 166, 184, 187, 196, 199
Ppu21I	YACGTR	1 cut(s)	394
Psp124BI	GAGCTC	1 cut(s)	223
Psp1406I	AACGTT	1 cut(s)	288
PspN4I	GGNNCC	2 cut(s)	321, 464
PsuI	RGATCY	1 cut(s)	87
SacI	GAGCTC	1 cut(s)	223
SaqAI	TTAA	2 cut(s)	309, 562
SatI	GCNGC	7 cut(s)	26, 29, 165, 183, 186, 195, 198
Sau3AI	GATC	2 cut(s)	87, 147
ScrFI	CCNGG	1 cut(s)	558
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	7 cut(s)	196, 223, 291, 368, 396, 402, 528
SfaNI	GCATC	1 cut(s)	431
Sse9I	AATT	1 cut(s)	107
SsiI	CCGC	3 cut(s)	183, 186, 197
SstI	GAGCTC	1 cut(s)	223
StyD4I	CCNGG	1 cut(s)	556
TaaI	ACNGT	2 cut(s)	49, 485
TaiI	ACGT	3 cut(s)	291, 396, 528
TaqI	TCGA	2 cut(s)	83, 425
TasI	AATT	1 cut(s)	107
TauI	GCSGC	3 cut(s)	185, 188, 200
TfiI	GAWTC	2 cut(s)	256, 450
Tru1I	TTAA	2 cut(s)	309, 562
Tru9I	TTAA	2 cut(s)	309, 562
TseFI	GTSAC	2 cut(s)	7, 76
TseI	GCWGC	4 cut(s)	25, 28, 164, 194
Tsp45I	GTSAC	2 cut(s)	7, 76
TspDTI	ATGAA	6 cut(s)	189, 291, 297, 317, 506, 560
TspGWI	ACGGA	1 cut(s)	455
XceI	RCATGY	1 cut(s)	422
Zsp2I	ATGCAT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.