Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003817

Physical Location & Seq

Genomic Coordinates Forward (+)

20715180 .. 20715563

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1212000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGCTACTGCTGCAGTCACCTCCTTTTCTTTGTTTAGAAATTATGCAACAACAACTGTGAGAGCTTTTGTGACAGTGAAAGCCTCAAACACCAATTTCATAACTTCCTTTCTTCTTCTGCACTTTCGCAGATCCCTGTGCCGTGTTAGCACTACAAACAATAAGGAGGCTGCTGCAAAGTTAGCTGTAGTGAATGCCGACACTGGAGCTCCAACAATATTTGACAAGATCATATCTAAGGAAATCCCATCAAGCATTGTATATGAGGATGATCTGGTCTTGGCATTTCGTGATATCAATCTGCAGGCTCCTATTCACGTTTTAGTCATCCTAAAGCTCAATGATGGATTAACTGGCCTGGGAAAGGTAATCTATGGCCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HIT

Protein Analysis

128

Amino Acids

13.83

Weight (kDa)

9.46

Isoelectric Point (pI)

20.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DcpS_C	PF11969	72 - 112	1.4e-07	Scavenger mRNA decapping enzyme C-term binding
HIT	PF01230	80 - 112	5.5e-08	HIT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003817)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31160 AT1G31160
fragaria_vesca	FvH4_3g12440 FvH4_3g12440
malus_domestica	MD05G1250300.v1.1 MD09G1212000.v1.1 MD15G1229700.v1.1
prunus_persica	Prupe.4G113300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0020321 RchiOBHm_Chr6g0275781
rosa_laevigata	RLG00000032517
rosa_multiflora	Rmu_sc0002087.1_g000003 Rmu_sc0005654.1_g000009 Rmu_sc0007157.1_g000005
rosa_roxburghii	Rroxscaffold_1G00057890 Rroxscaffold_5G00358390
rosa_rugosa	Rorug04G0039600 Rorug04G0039700 Rorug04G0039800 Rorug05G0058700 Rorug05G0326900 Rorug06G0016000 Rorug07G0326200
rosa_samantha	Rh2AG345500 Rh5AG148900 Rh5BG148600 Rh5BG191100 Rh5CG160100 Rh5CG567500 Rh5DG147300 Rh6DG204100
rosa_wichuraiana	Rw2G009030 Rw4G021020 Rw5G013200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	364
AjnI	CCWGG	1 cut(s)	357
AluBI	AGCT	4 cut(s)	65, 185, 209, 337
AluI	AGCT	4 cut(s)	65, 185, 209, 337
Alw21I	GWGCWC	1 cut(s)	211
AlwI	GGATC	1 cut(s)	126
AoxI	GGCC	2 cut(s)	355, 376
ApeKI	GCWGC	3 cut(s)	11, 170, 173
AsuHPI	GGTGA	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	2 cut(s)	157, 160
BccI	CCATC	2 cut(s)	256, 338
BceAI	ACGGC	1 cut(s)	126
BciT130I	CCWGG	1 cut(s)	359
BfmI	CTRYAG	3 cut(s)	12, 186, 302
BisI	GCNGC	3 cut(s)	12, 171, 174
BlsI	GCNGC	3 cut(s)	13, 172, 175
Bme1390I	CCNGG	1 cut(s)	359
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	1 cut(s)	359
BpmI	CTGGAG	1 cut(s)	225
BsaBI	GATNNNNATC	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	358
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse1I	ACTGG	2 cut(s)	208, 358
Bse8I	GATNNNNATC	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	1 cut(s)	358
BseGI	GGATG	2 cut(s)	274, 327
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseNI	ACTGG	2 cut(s)	208, 358
BseXI	GCAGC	2 cut(s)	157, 160
BsgI	GTGCAG	1 cut(s)	104
BshFI	GGCC	2 cut(s)	357, 378
BsiHKAI	GWGCWC	1 cut(s)	211
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	2 cut(s)	357, 378
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	3 cut(s)	131, 228, 271
BspANI	GGCC	2 cut(s)	357, 378
BspLI	GGNNCC	1 cut(s)	309
BspMAI	CTGCAG	2 cut(s)	16, 306
BspPI	GGATC	1 cut(s)	126
BsrI	ACTGG	2 cut(s)	208, 358
BssECI	CCNNGG	1 cut(s)	358
BssMI	GATC	3 cut(s)	131, 228, 271
Bst2UI	CCWGG	1 cut(s)	359
Bst4CI	ACNGT	2 cut(s)	58, 76
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	1 cut(s)	237
BstENI	CCTNNNNNAGG	1 cut(s)	362
BstF5I	GGATG	2 cut(s)	274, 327
BstKTI	GATC	3 cut(s)	134, 231, 274
BstMBI	GATC	3 cut(s)	131, 228, 271
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 147, 182
BstNI	CCWGG	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	357
BstSFI	CTRYAG	3 cut(s)	12, 186, 302
BstV1I	GCAGC	2 cut(s)	157, 160
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
BsuRI	GGCC	2 cut(s)	357, 378
BtsCI	GGATG	2 cut(s)	274, 327
BtsIMutI	CAGTG	2 cut(s)	81, 201
Cac8I	GCNNGC	1 cut(s)	306
DdeI	CTNAG	1 cut(s)	237
DpnI	GATC	3 cut(s)	133, 230, 273
DpnII	GATC	3 cut(s)	131, 228, 271
Ecl136II	GAGCTC	1 cut(s)	209
Eco24I	GRGCYC	1 cut(s)	211
Eco32I	GATATC	1 cut(s)	295
Eco53kI	GAGCTC	1 cut(s)	209
EcoICRI	GAGCTC	1 cut(s)	209
EcoNI	CCTNNNNNAGG	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	357
EcoRV	GATATC	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	211
FaiI	YATR	7 cut(s)	45, 101, 233, 262, 264, 375, 382
Fnu4HI	GCNGC	3 cut(s)	12, 171, 174
FokI	GGATG	2 cut(s)	281, 314
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	3 cut(s)	12, 171, 174
GluI	GCNGC	3 cut(s)	12, 171, 174
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	2 cut(s)	357, 378
HphI	GGTGA	1 cut(s)	10
Hpy188III	TCNNGA	1 cut(s)	290
HpyCH4III	ACNGT	2 cut(s)	58, 76
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	5 cut(s)	14, 47, 121, 176, 304
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 147, 182
HpyF3I	CTNAG	1 cut(s)	237
HpySE526I	ACGT	1 cut(s)	318
Kzo9I	GATC	3 cut(s)	131, 228, 271
LmnI	GCTCC	3 cut(s)	206, 214, 313
LpnPI	CCDG	7 cut(s)	149, 189, 260, 290, 339, 344, 371
Lsp1109I	GCAGC	2 cut(s)	157, 160
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	2 cut(s)	16, 70
MalI	GATC	3 cut(s)	133, 230, 273
MboI	GATC	3 cut(s)	131, 228, 271
MboII	GAAGA	2 cut(s)	104, 107
MflI	RGATCY	1 cut(s)	131
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	2 cut(s)	40, 94
MmeI	TCCRAC	1 cut(s)	236
MnlI	CCTC	4 cut(s)	31, 94, 160, 259
MseI	TTAA	1 cut(s)	350
MspR9I	CCNGG	1 cut(s)	359
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	3 cut(s)	11, 147, 182
NdeII	GATC	3 cut(s)	131, 228, 271
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	2 cut(s)	16, 70
PctI	GAATGC	1 cut(s)	199
PkrI	GCNGC	3 cut(s)	13, 172, 175
Psp124BI	GAGCTC	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	357
PspN4I	GGNNCC	1 cut(s)	309
PstI	CTGCAG	2 cut(s)	16, 306
PsuI	RGATCY	1 cut(s)	131
SacI	GAGCTC	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	3 cut(s)	12, 171, 174
Sau3AI	GATC	3 cut(s)	131, 228, 271
ScrFI	CCNGG	1 cut(s)	359
SduI	GDGCHC	1 cut(s)	211
SetI	ASST	7 cut(s)	23, 67, 187, 211, 321, 339, 369
SfcI	CTRYAG	3 cut(s)	12, 186, 302
Sse9I	AATT	2 cut(s)	40, 94
SspI	AATATT	1 cut(s)	219
SstI	GAGCTC	1 cut(s)	211
StyD4I	CCNGG	1 cut(s)	357
TaaI	ACNGT	2 cut(s)	58, 76
TaiI	ACGT	1 cut(s)	321
TasI	AATT	2 cut(s)	40, 94
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TscAI	CASTG	2 cut(s)	81, 208
TseFI	GTSAC	2 cut(s)	16, 70
TseI	GCWGC	3 cut(s)	11, 170, 173
Tsp45I	GTSAC	2 cut(s)	16, 70
TspDTI	ATGAA	1 cut(s)	88
TspRI	CASTG	2 cut(s)	81, 208
XagI	CCTNNNNNAGG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.