Rorug04G0039600

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
6103935 .. 6112501
8567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0039600.1

Sequence Viewer

Length: 3411 bp
ATGGCTGGGGTTTCTAGTGAGGATTCTGGAGTAGGAAGGTCTACAGAGGGGATTTCAAGTGGGCAGCGTTGCCTCTCTGGGGAGGCATTAGCAGAGTGGCGGTCATCTGAGCAGGTGGAAAATGGAACCCCATCTACTTCTCCCCCTTATTGGGATTCTGATGATGATGACGATGGTGGGCCAAAACCGTCCGAGCTATATGGAAAATATACCTGGAAGATTGAGAAATTTTCTCAGATTAACAAAAGGGAACTTCGTAGTAATGCATTTGAGGTTGGCGGTTACAAATGGTACATTTTAATCTACCCCCAAGGTTGCGATGTCTGCAATCATCTCTCCTTGTTTCTCTGTGTAGCTAATCATGACAAACTTCTTCCAGGTTGGAGTCATTTTGCGCAGTTTACCATAGCTGTGGTGAATAAAGATCCCAAGAAGTCAAAATACTCAGACACATTACATCGGTTTTGGAAGAAAGAGCATGACTGGGGGTGGAAAAAATTTATGGAGCTTTCAAAAGTACTAGATGGGTTTATTGATGCTGACACTCTTATAATAAAGGCTCAAGTTCAAGTTATCAGAGAGAAAGCAGACCGGCCGTTTCGCTGCCTTGATTGTCAATATAGGAGAGAACTTGTTAGGGTATACTTGACAAATGTAGAGCAAATTTGCCGTCGTTTTGTGGAAGAGAGGAGAAGCAAACTTGGAAAGTTGATAGATGATAAAGCTAGATGGTCAAGCTTCTGCTCGTTCTGGTTGGGAATTGAACAAAATGCAAGGCGCCGTATGTCCAGGGAAAAGATGGATGCAGTTCTGAAAGTAGTGGTTAAGCACTTTTTTATTGAAAAAGAAGTCACATCTACGTTGGTAATGGATTCATTGTATAGTGGTTTAAAGGCTCTTGAAGGCCAAACTAAGTGCAAGAAAAGTAAGCTGAAATTATTGGAAGCTGAGGAAAGTCCAGCACCAATTGTTCGTGTGGAGAAAGATATGTTTGTATTGGTGGATGATGTTTTAAAGCTACTTGAGAGGGCTGCCGTTGAACCTTTACCTCCAAAAGATGAGAAGGGTCCTCAAAATCGTACTAAAGATGGAAATTCTGGAGAGGACTTCAATAAAGATTCGATTGAGCGAGATGAAAGACGTCTTACGGAATTGGGTCGTAGGACTGTGGAAATATTTGTCCTTGCTCATATTTTCAGCAATAAAATTGAAGTTGCCTATCATGAATCCGTTGCATTGAAGAGGCAAGAGGAGCTCATCCGTGAGGAAGAAGCAGCATGGCAGGCGGAGACTGACCAGAAGGCAAAACGTGGAGCAACTGAGAAGGAAAAGAAGTCGAAGAAAAAACAGGCTAAACAGAAAAGGAATAACCGGAAGGGGAAGGACAAAGGGAGGGAAGAAAGGCCGGGCGTAGCAATAGCAGAGAAACAACAGGAACTCCCTATTGATGAACTAAAAGACTACACGAGGGATGAGGAGCAACCTGTGGTTGAAAAGGCAGATACAGTGGAAGATGTATCTGACGTGTCTGATTCAGCGGATGGTGTTGCTGAAGTACCTCAACCTGATTCTGAAGACAGAGATGCTAGTCCAGTCAATTGGGATACCGATACTTCAGAAATCCATCCTCCCACAGGACCCAGTAGCAGTGGAATTAGTGGCCTCTCATCCGTGCAAAATGGAGTATCAGAGAAAAAGAGCCCATCTGTGATGGATGATAGTTCCTCAACATGTTCTACTGATTCAGTGCCATCAGTGGTAACGAATGGACCATATAAAGGGAACTCCTTTTCTAATTACAAAACTCAAAAATCACCTAGCAGGGGAAAACAGCAACGGGGTAAGGCAGCAGCTGATGGGAATAGTTGGCCAAATGAGTTGGATAATCAACCTTCTGGACCTGTTGCAGATGCGGGGAATCAGAATGATGTCTCTGGAAGTAGTAAGGTGGGTGAACCTGAGTCTGAGCCAGTTGTTCACTCATTGCAGGATCGGATTAAGTGGCTGGAGCAGCATGTGGTTAAGAAGGAGGAAGAGGTTGTTTCACTGCAGAAAAAATTGAGCATCAAAGATCAGGTTGATGTAGAAAGACCTATGAAAGAGAAGACACCAGCAGTGACATCTTCTCCTGAAAGCCCTTCTAAAAATGTGTCATTGACTGGTCGACCCAAGTCGGACTGCCAGAGTAGTACCGTTGCAGATTCTATTCCTCTTAAGAGAGCAACCTCAATCAGCATACAACAGACTGATAGAGTGGCTCCTTCGACTGTGTCATTCCAGAGTAATGGCATGTCCAAACCTGATACTCAAAAGGCCGCAACTCCAAGACCAGCTGAAAAAGCCATGGCACAACAAGTACCGGTGGTGTCCAGGCCCTCCAGTGCACCTCTCGTTCCTGGTCCCAGGCCGCCAACATCTACTGTTGTTTCAATGGTTCAAACATCTCCTCTGCTTGCCCGTTCAGTGAGTGCTGCTGGTCGACTAGGTCCTGATCCATCACCAGCAACTCATAGTTATGTTCCCCAGTCATATAGAAATGCCATACTTGGTAACCATGTCCCGTCGGGATCAACTGGTTTCACACATACCAATTCCGGCAGCTCAACAGTGAAACCATCTCCATCATACTCCCAACCACCAGCCTTGGTATCGACCCCAATGTTCATACCCCAGAGTCCTGAAGTGATGGATACAAACACAGTTAACTCCGGCTTCCCATTTGGCATGGTAACTCGGGATGTGCTGCATAATGGACCACAGTGGATGGAGAGTTCGCAAAGGGAATCAAGCAAAGGCATGAACTATGATCATTCGTCCTTGCTTAATGATCAAGGTTTTGATTTCTACCAGCCTTTGCATGGTGGGCAACGTGAACAGTTCTCCACTGAGTTGCCAGCTTGTACATCTGGTCGCCAGACCCAAGGTGTATCAGCAGATGACTTCCCCCACATTGACATCATCAATGATCTGCTGGATGATGAACATGGCTTTGGGGGAGCTATAGCGAGTTCAGTTTTTCACTCCTTCAGCAATGGGCCGAACCATTTAAATCGCCAGTTTTCTTATCCCGGTGATTTGGGCACATCTAGCGACATGGAATCTGCAACCAGCTCTTGTAGGTTTGAGAGAACACGGAGTTACCAAGATGATGGGTTCCAGAGGGGCTACACATTAGGGGGCCATTTCGAATCACTTAGAGAATTTACTCCGCAAGCTGGTGCTCTACCTTATGTGAACGGGCAGATTGATGGGTTAATTCCTAACCAGTGGCAGATGGCTGGTTCAGATCTATCTTTACAAGGCATGAGGAATACTGAAAATGATGGTTACCCGTACTACAATCCAGATTATTCGAATATGGCATGTGGGGTGAACGGTTACACTGTATTCCGGCCTTCAAATGGTCAGTGA

Protein Analysis

1136

Amino Acids

125.83

Weight (kDa)

5.89

Isoelectric Point (pI)

50.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 69 - 189 2.6e-33 MATH domain
MATH PF00917 74 - 191 7.5e-22 MATH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 551
AarI CACCTGC 1 cut(s) 103
AatII GACGTC 1 cut(s) 1144
Acc16I TGCGCA 1 cut(s) 396
Acc36I ACCTGC 1 cut(s) 103
AccB1I GGYRCC 1 cut(s) 777
AccI GTMKAC 4 cut(s) 41, 642, 2164, 2479
AciI CCGC 8 cut(s) 100, 279, 1286, 1538, 1913, 2316, 2408, 3209
AclWI GGATC 4 cut(s) 419, 1998, 2486, 2575
AcoI YGGCCR 2 cut(s) 593, 1868
AcsI RAATTY 5 cut(s) 227, 497, 663, 1093, 3200
AcuI CTGAAG 5 cut(s) 1572, 1593, 1599, 2700, 3010
AcyI GRCGYC 2 cut(s) 778, 1141
AfaI GTAC 8 cut(s) 293, 519, 1081, 1557, 2191, 2358, 2902, 3335
AfiI CCNNNNNNNGG 9 cut(s) 79, 150, 151, 1634, 1778, 1823, 2858, 3215, 3401
AflII CTTAAG 1 cut(s) 2213
AflIII ACRYGT 2 cut(s) 1524, 1730
AgeI ACCGGT 1 cut(s) 2359
AjiI CACGTC 1 cut(s) 1525
AjnI CCWGG 6 cut(s) 212, 376, 788, 2369, 2395, 2402
AjuI GAANNNNNNNTTGG 2 cut(s) 2973, 3005
AloI GAACNNNNNNTCC 2 cut(s) 2755, 2787
Alw21I GWGCWC 3 cut(s) 1257, 2386, 3223
Alw26I GTCTC 2 cut(s) 1283, 1936
Alw44I GTGCAC 1 cut(s) 2382
AlwI GGATC 4 cut(s) 419, 1998, 2486, 2575
AlwNI CAGNNNCTG 1 cut(s) 1853
Ama87I CYCGRG 1 cut(s) 2733
ApaLI GTGCAC 1 cut(s) 2382
ApoI RAATTY 5 cut(s) 227, 497, 663, 1093, 3200
ArsI GACNNNNNNTTYG 2 cut(s) 655, 687
AsiGI ACCGGT 1 cut(s) 2359
AspLEI GCGC 2 cut(s) 397, 780
AsuC2I CCSGG 2 cut(s) 1407, 3069
AsuHPI GGTGA 6 cut(s) 427, 1806, 1964, 2490, 3083, 3382
AsuII TTCGAA 2 cut(s) 3186, 3353
AvaI CYCGRG 1 cut(s) 2733
AvaII GGWCC 7 cut(s) 1067, 1637, 1769, 1898, 2399, 2486, 2753
BaeGI GKGCMC 2 cut(s) 2386, 3083
BalI TGGCCA 1 cut(s) 1870
BanI GGYRCC 1 cut(s) 777
BanII GRGCYC 2 cut(s) 1257, 1703
BarI GAAGNNNNNNTAC 2 cut(s) 425, 457
BauI CACGAG 1 cut(s) 1465
BbsI GAAGAC 2 cut(s) 1581, 2111
Bbv12I GWGCWC 3 cut(s) 1257, 2386, 3223
BbvCI CCTCAGC 1 cut(s) 948
BceAI ACGGC 4 cut(s) 580, 654, 765, 1019
BciT130I CCWGG 6 cut(s) 214, 378, 790, 2371, 2397, 2404
BciVI GTATCC 2 cut(s) 1597, 2683
BclI TGATCA 2 cut(s) 2806, 2827
BcnI CCSGG 2 cut(s) 1407, 3069
BcoDI GTCTC 2 cut(s) 1283, 1936
BfaI CTAG 7 cut(s) 15, 521, 726, 1587, 1818, 2483, 3087
BfmI CTRYAG 3 cut(s) 42, 2048, 3000
BfoI RGCGCY 1 cut(s) 781
BfrI CTTAAG 1 cut(s) 2213
BfuAI ACCTGC 1 cut(s) 103
BfuI GTATCC 2 cut(s) 1597, 2683
BglII AGATCT 1 cut(s) 3286
BmcAI AGTACT 1 cut(s) 519
Bme1390I CCNGG 8 cut(s) 214, 378, 790, 1407, 2371, 2397, 2404, 3069
Bme18I GGWCC 7 cut(s) 1067, 1637, 1769, 1898, 2399, 2486, 2753
BmeT110I CYCGRG 1 cut(s) 2733
BmgBI CACGTC 1 cut(s) 1525
BmiI GGNNCC 8 cut(s) 127, 779, 1068, 1639, 2259, 2401, 3155, 3179
BmrFI CCNGG 8 cut(s) 214, 378, 790, 1407, 2371, 2397, 2404, 3069
BmrI ACTGGG 3 cut(s) 493, 1635, 2518
BmsI GCATC 5 cut(s) 526, 793, 1573, 1900, 2073
BmuI ACTGGG 3 cut(s) 493, 1635, 2518
BoxI GACNNNNGTC 1 cut(s) 2170
BpiI GAAGAC 2 cut(s) 1581, 2111
BpmI CTGGAG 4 cut(s) 48, 1119, 2027, 2362
Bpu10I CCTNAGC 1 cut(s) 948
Bpu14I TTCGAA 2 cut(s) 3186, 3353
BpuEI CTTGAG 2 cut(s) 546, 1043
BpuMI CCSGG 2 cut(s) 1407, 3069
BsaHI GRCGYC 2 cut(s) 778, 1141
BsaJI CCNNGG 6 cut(s) 310, 789, 2343, 2402, 2643, 2920
BsaWI WCCGGW 2 cut(s) 1371, 2359
BsaXI ACNNNNNCTCC 4 cut(s) 1422, 1452, 2110, 2140
Bsc4I CCNNNNNNNGG 9 cut(s) 79, 150, 151, 1634, 1778, 1823, 2858, 3215, 3401
Bse118I RCCGGY 2 cut(s) 591, 2359
Bse3DI GCAATG 2 cut(s) 1982, 3037
BseBI CCWGG 6 cut(s) 214, 378, 790, 2371, 2397, 2404
BseDI CCNNGG 6 cut(s) 310, 789, 2343, 2402, 2643, 2920
BseLI CCNNNNNNNGG 9 cut(s) 79, 150, 151, 1634, 1778, 1823, 2858, 3215, 3401
BseMI GCAATG 2 cut(s) 1982, 3037
BseMII CTCAG 8 cut(s) 99, 248, 459, 939, 1311, 1950, 1956, 2877
BseRI GAGGAG 4 cut(s) 703, 1265, 1490, 2436
BseSI GKGCMC 2 cut(s) 2386, 3083
BseX3I CGGCCG 1 cut(s) 593
BseYI CCCAGC 1 cut(s) 5
Bsh1285I CGRYCG 1 cut(s) 596
BshNI GGYRCC 1 cut(s) 777
BshTI ACCGGT 1 cut(s) 2359
BsiEI CGRYCG 1 cut(s) 596
BsiHKAI GWGCWC 3 cut(s) 1257, 2386, 3223
BsiHKCI CYCGRG 1 cut(s) 2733
BsiSI CCGG 8 cut(s) 592, 1372, 1406, 2360, 2595, 2709, 3069, 3391
BslFI GGGAC 2 cut(s) 2385, 2543
BslI CCNNNNNNNGG 9 cut(s) 79, 150, 151, 1634, 1778, 1823, 2858, 3215, 3401
BsmAI GTCTC 2 cut(s) 1283, 1936
BsmFI GGGAC 2 cut(s) 2385, 2543
BsoBI CYCGRG 1 cut(s) 2733
Bsp119I TTCGAA 2 cut(s) 3186, 3353
Bsp1286I GDGCHC 5 cut(s) 1257, 1703, 2386, 3083, 3223
Bsp1407I TGTACA 1 cut(s) 2900
Bsp143I GATC 9 cut(s) 424, 1990, 2071, 2491, 2567, 2806, 2827, 2965, 3286
Bsp19I CCATGG 1 cut(s) 2343
BspACI CCGC 8 cut(s) 100, 279, 1286, 1538, 1913, 2316, 2408, 3209
BspCNI CTCAG 8 cut(s) 100, 247, 458, 940, 1312, 1951, 1957, 2878
BspHI TCATGA 2 cut(s) 361, 1222
BspLI GGNNCC 8 cut(s) 127, 779, 1068, 1639, 2259, 2401, 3155, 3179
BspMAI CTGCAG 1 cut(s) 2052
BspMI ACCTGC 1 cut(s) 103
BspPI GGATC 4 cut(s) 419, 1998, 2486, 2575
BspT104I TTCGAA 2 cut(s) 3186, 3353
BspT107I GGYRCC 1 cut(s) 777
BspTI CTTAAG 1 cut(s) 2213
BsrDI GCAATG 2 cut(s) 1982, 3037
BsrFI RCCGGY 2 cut(s) 591, 2359
BsrGI TGTACA 1 cut(s) 2900
BssAI RCCGGY 2 cut(s) 591, 2359
BssECI CCNNGG 6 cut(s) 310, 789, 2343, 2402, 2643, 2920
BssMI GATC 9 cut(s) 424, 1990, 2071, 2491, 2567, 2806, 2827, 2965, 3286
BssNAI GTATAC 1 cut(s) 643
BssNI GRCGYC 2 cut(s) 778, 1141
BssSI CACGAG 1 cut(s) 1465
BssT1I CCWWGG 4 cut(s) 310, 2343, 2643, 2920
Bst1107I GTATAC 1 cut(s) 643
Bst2BI CACGAG 1 cut(s) 1465
Bst2UI CCWGG 6 cut(s) 214, 378, 790, 2371, 2397, 2404
Bst6I CTCTTC 3 cut(s) 678, 1235, 2028
BstACI GRCGYC 2 cut(s) 778, 1141
BstAFI CTTAAG 1 cut(s) 2213
BstAUI TGTACA 1 cut(s) 2900
BstBI TTCGAA 2 cut(s) 3186, 3353
BstC8I GCNNGC 4 cut(s) 1284, 2454, 2895, 3213
BstDSI CCRYGG 1 cut(s) 2343
BstEII GGTNACC 2 cut(s) 2549, 3326
BstENI CCTNNNNNAGG 1 cut(s) 1632
BstH2I RGCGCY 1 cut(s) 781
BstHHI GCGC 2 cut(s) 397, 780
BstKTI GATC 9 cut(s) 427, 1993, 2074, 2494, 2570, 2809, 2830, 2968, 3289
BstMAI GTCTC 2 cut(s) 1283, 1936
BstMBI GATC 9 cut(s) 424, 1990, 2071, 2491, 2567, 2806, 2827, 2965, 3286
BstMCI CGRYCG 1 cut(s) 596
BstMWI GCNNNNNNNGC 7 cut(s) 324, 1252, 1283, 2011, 2339, 2863, 3087
BstNI CCWGG 6 cut(s) 214, 378, 790, 2371, 2397, 2404
BstNSI RCATGY 4 cut(s) 1734, 2018, 2293, 3366
BstPAI GACNNNNGTC 1 cut(s) 2170
BstPI GGTNACC 2 cut(s) 2549, 3326
BstSCI CCNGG 8 cut(s) 212, 376, 788, 1405, 2369, 2395, 2402, 3067
BstSFI CTRYAG 3 cut(s) 42, 2048, 3000
BstSLI GKGCMC 2 cut(s) 2386, 3083
BstV2I GAAGAC 2 cut(s) 1581, 2111
BstX2I RGATCY 2 cut(s) 424, 3286
BstXI CCANNNNNNTGG 4 cut(s) 412, 1599, 2285, 3149
BstYI RGATCY 2 cut(s) 424, 3286
BstZ17I GTATAC 1 cut(s) 643
BstZI CGGCCG 1 cut(s) 593
BsuI GTATCC 2 cut(s) 1597, 2683
BtgI CCRYGG 1 cut(s) 2343
BtgZI GCGATG 1 cut(s) 333
BtrI CACGTC 1 cut(s) 1525
BtsI GCAGTG 3 cut(s) 1654, 2045, 2121
BveI ACCTGC 1 cut(s) 103
Cac8I GCNNGC 4 cut(s) 1284, 2454, 2895, 3213
CaiI CAGNNNCTG 1 cut(s) 1853
CciI TCATGA 2 cut(s) 361, 1222
CfoI GCGC 2 cut(s) 397, 780
Cfr10I RCCGGY 2 cut(s) 591, 2359
Csp6I GTAC 8 cut(s) 292, 518, 1080, 1556, 2190, 2357, 2901, 3334
CspAI ACCGGT 1 cut(s) 2359
CspCI CAANNNNNGTGG 2 cut(s) 2625, 2660
CviQI GTAC 8 cut(s) 292, 518, 1080, 1556, 2190, 2357, 2901, 3334
DinI GGCGCC 1 cut(s) 779
DpnI GATC 9 cut(s) 426, 1992, 2073, 2493, 2569, 2808, 2829, 2967, 3288
DpnII GATC 9 cut(s) 424, 1990, 2071, 2491, 2567, 2806, 2827, 2965, 3286
DraI TTTAAA 3 cut(s) 891, 1014, 3048
EaeI YGGCCR 2 cut(s) 593, 1868
EagI CGGCCG 1 cut(s) 593
Eam1104I CTCTTC 3 cut(s) 678, 1235, 2028
EarI CTCTTC 3 cut(s) 678, 1235, 2028
EciI GGCGGA 1 cut(s) 1301
Ecl136II GAGCTC 1 cut(s) 1255
EclXI CGGCCG 1 cut(s) 593
Eco130I CCWWGG 4 cut(s) 310, 2343, 2643, 2920
Eco24I GRGCYC 2 cut(s) 1257, 1703
Eco47I GGWCC 7 cut(s) 1067, 1637, 1769, 1898, 2399, 2486, 2753
Eco52I CGGCCG 1 cut(s) 593
Eco53kI GAGCTC 1 cut(s) 1255
Eco57I CTGAAG 5 cut(s) 1572, 1593, 1599, 2700, 3010
Eco88I CYCGRG 1 cut(s) 2733
Eco91I GGTNACC 2 cut(s) 2549, 3326
EcoICRI GAGCTC 1 cut(s) 1255
EcoNI CCTNNNNNAGG 1 cut(s) 1632
EcoO109I RGGNCCY 4 cut(s) 1067, 1637, 2373, 2486
EcoO65I GGTNACC 2 cut(s) 2549, 3326
EcoRII CCWGG 6 cut(s) 212, 376, 788, 2369, 2395, 2402
EcoT14I CCWWGG 4 cut(s) 310, 2343, 2643, 2920
EcoT22I ATGCAT 1 cut(s) 268
EcoT38I GRGCYC 2 cut(s) 1257, 1703
EgeI GGCGCC 1 cut(s) 779
EheI GGCGCC 1 cut(s) 779
ErhI CCWWGG 4 cut(s) 310, 2343, 2643, 2920
FaqI GGGAC 2 cut(s) 2385, 2543
FauI CCCGC 1 cut(s) 1906
FbaI TGATCA 2 cut(s) 2806, 2827
FblI GTMKAC 4 cut(s) 41, 642, 2164, 2479
FriOI GRGCYC 2 cut(s) 1257, 1703
FspBI CTAG 7 cut(s) 15, 521, 726, 1587, 1818, 2483, 3087
FspI TGCGCA 1 cut(s) 396
GlaI GCGC 2 cut(s) 396, 779
GsaI CCCAGC 1 cut(s) 9
GsuI CTGGAG 4 cut(s) 48, 1119, 2027, 2362
HaeII RGCGCY 1 cut(s) 781
HapII CCGG 8 cut(s) 592, 1372, 1406, 2360, 2595, 2709, 3069, 3391
HhaI GCGC 2 cut(s) 397, 780
Hin1I GRCGYC 2 cut(s) 778, 1141
Hin6I GCGC 2 cut(s) 395, 778
HinP1I GCGC 2 cut(s) 395, 778
HincII GTYRAC 3 cut(s) 2165, 2480, 2704
HindII GTYRAC 3 cut(s) 2165, 2480, 2704
HindIII AAGCTT 1 cut(s) 736
HpaI GTTAAC 1 cut(s) 2704
HpaII CCGG 8 cut(s) 592, 1372, 1406, 2360, 2595, 2709, 3069, 3391
HphI GGTGA 6 cut(s) 427, 1806, 1964, 2490, 3083, 3382
Hpy99I CGWCG 2 cut(s) 675, 2566
HpyCH4IV ACGT 5 cut(s) 860, 1141, 1309, 1524, 2869
HpyF10VI GCNNNNNNNGC 7 cut(s) 324, 1252, 1283, 2011, 2339, 2863, 3087
HpySE526I ACGT 5 cut(s) 860, 1141, 1309, 1524, 2869
Hsp92I GRCGYC 2 cut(s) 778, 1141
HspAI GCGC 2 cut(s) 395, 778
KasI GGCGCC 1 cut(s) 777
Ksp22I TGATCA 2 cut(s) 2806, 2827
KspAI GTTAAC 1 cut(s) 2704
Kzo9I GATC 9 cut(s) 424, 1990, 2071, 2491, 2567, 2806, 2827, 2965, 3286
LmnI GCTCC 7 cut(s) 505, 1252, 1313, 1477, 2008, 2263, 2996
LweI GCATC 5 cut(s) 526, 793, 1573, 1900, 2073
MaeI CTAG 7 cut(s) 15, 521, 726, 1587, 1818, 2483, 3087
MaeII ACGT 5 cut(s) 860, 1141, 1309, 1524, 2869
MaeIII GTNAC 9 cut(s) 281, 850, 1759, 2116, 2549, 2728, 3137, 3326, 3377
MalI GATC 9 cut(s) 426, 1992, 2073, 2493, 2569, 2808, 2829, 2967, 3288
MboI GATC 9 cut(s) 424, 1990, 2071, 2491, 2567, 2806, 2827, 2965, 3286
MfeI CAATTG 2 cut(s) 966, 1597
MflI RGATCY 2 cut(s) 424, 3286
MhlI GDGCHC 5 cut(s) 1257, 1703, 2386, 3083, 3223
MlsI TGGCCA 1 cut(s) 1870
MluNI TGGCCA 1 cut(s) 1870
Mly113I GGCGCC 1 cut(s) 778
MlyI GAGTC 3 cut(s) 394, 1970, 2683
MmeI TCCRAC 3 cut(s) 362, 1860, 2154
Mox20I TGGCCA 1 cut(s) 1870
Mph1103I ATGCAT 1 cut(s) 268
MscI TGGCCA 1 cut(s) 1870
MslI CAYNNNNRTG 2 cut(s) 410, 2514
Msp20I TGGCCA 1 cut(s) 1870
MspA1I CMGCKG 3 cut(s) 1538, 1853, 2333
MspCI CTTAAG 1 cut(s) 2213
MspI CCGG 8 cut(s) 592, 1372, 1406, 2360, 2595, 2709, 3069, 3391
MspR9I CCNGG 8 cut(s) 214, 378, 790, 1407, 2371, 2397, 2404, 3069
MunI CAATTG 2 cut(s) 966, 1597
MvaI CCWGG 6 cut(s) 214, 378, 790, 2371, 2397, 2404
MwoI GCNNNNNNNGC 7 cut(s) 324, 1252, 1283, 2011, 2339, 2863, 3087
NarI GGCGCC 1 cut(s) 778
NciI CCSGG 2 cut(s) 1407, 3069
NcoI CCATGG 1 cut(s) 2343
NdeII GATC 9 cut(s) 424, 1990, 2071, 2491, 2567, 2806, 2827, 2965, 3286
NlaIV GGNNCC 8 cut(s) 127, 779, 1068, 1639, 2259, 2401, 3155, 3179
NmuCI GTSAC 2 cut(s) 850, 2116
NsbI TGCGCA 1 cut(s) 396
NsiI ATGCAT 1 cut(s) 268
NspI RCATGY 4 cut(s) 1734, 2018, 2293, 3366
NspV TTCGAA 2 cut(s) 3186, 3353
PagI TCATGA 2 cut(s) 361, 1222
PaqCI CACCTGC 1 cut(s) 103
PciI ACATGT 1 cut(s) 1730
PflFI GACNNNGTC 2 cut(s) 2269, 2484
PinAI ACCGGT 1 cut(s) 2359
PleI GAGTC 3 cut(s) 393, 1969, 2682
PluTI GGCGCC 1 cut(s) 781
PpsI GAGTC 3 cut(s) 393, 1969, 2682
PpuMI RGGWCCY 3 cut(s) 1067, 1637, 2486
PscI ACATGT 1 cut(s) 1730
PshAI GACNNNNGTC 1 cut(s) 2170
PsiI TTATAA 1 cut(s) 551
Psp124BI GAGCTC 1 cut(s) 1257
Psp5II RGGWCCY 3 cut(s) 1067, 1637, 2486
Psp6I CCWGG 6 cut(s) 212, 376, 788, 2369, 2395, 2402
PspEI GGTNACC 2 cut(s) 2549, 3326
PspFI CCCAGC 1 cut(s) 5
PspGI CCWGG 6 cut(s) 212, 376, 788, 2369, 2395, 2402
PspN4I GGNNCC 8 cut(s) 127, 779, 1068, 1639, 2259, 2401, 3155, 3179
PspPPI RGGWCCY 3 cut(s) 1067, 1637, 2486
PsrI GAACNNNNNNTAC 2 cut(s) 118, 150
PstI CTGCAG 1 cut(s) 2052
PstNI CAGNNNCTG 1 cut(s) 1853
PsuI RGATCY 2 cut(s) 424, 3286
PsyI GACNNNGTC 2 cut(s) 2269, 2484
PvuII CAGCTG 2 cut(s) 1853, 2333
RsaI GTAC 8 cut(s) 293, 519, 1081, 1557, 2191, 2358, 2902, 3335
RsaNI GTAC 8 cut(s) 292, 518, 1080, 1556, 2190, 2357, 2901, 3334
RseI CAYNNNNRTG 2 cut(s) 410, 2514
SacI GAGCTC 1 cut(s) 1257
SalI GTCGAC 2 cut(s) 2163, 2478
Sau3AI GATC 9 cut(s) 424, 1990, 2071, 2491, 2567, 2806, 2827, 2965, 3286
ScaI AGTACT 1 cut(s) 519
SchI GAGTC 3 cut(s) 394, 1970, 2683
ScrFI CCNGG 8 cut(s) 214, 378, 790, 1407, 2371, 2397, 2404, 3069
SduI GDGCHC 5 cut(s) 1257, 1703, 2386, 3083, 3223
SfaNI GCATC 5 cut(s) 526, 793, 1573, 1900, 2073
SfcI CTRYAG 3 cut(s) 42, 2048, 3000
SfoI GGCGCC 1 cut(s) 779
SfuI TTCGAA 2 cut(s) 3186, 3353
SinI GGWCC 7 cut(s) 1067, 1637, 1769, 1898, 2399, 2486, 2753
SmiI ATTTAAAT 1 cut(s) 3048
SmiMI CAYNNNNRTG 2 cut(s) 410, 2514
SmlI CTYRAG 3 cut(s) 561, 1022, 2213
SmoI CTYRAG 3 cut(s) 561, 1022, 2213
SsiI CCGC 8 cut(s) 100, 279, 1286, 1538, 1913, 2316, 2408, 3209
SspDI GGCGCC 1 cut(s) 777
SspI AATATT 1 cut(s) 1176
SspMI CTAG 7 cut(s) 15, 521, 726, 1587, 1818, 2483, 3087
SstI GAGCTC 1 cut(s) 1257
StyD4I CCNGG 8 cut(s) 212, 376, 788, 1405, 2369, 2395, 2402, 3067
StyI CCWWGG 4 cut(s) 310, 2343, 2643, 2920
SwaI ATTTAAAT 1 cut(s) 3048
TaiI ACGT 5 cut(s) 863, 1144, 1312, 1527, 2872
TaqI TCGA 8 cut(s) 1121, 1337, 2164, 2264, 2479, 2651, 3186, 3353
TatI WGTACW 2 cut(s) 517, 2900
TauI GCSGC 2 cut(s) 2318, 2410
TseFI GTSAC 2 cut(s) 850, 2116
Tsp45I GTSAC 2 cut(s) 850, 2116
TspDTI ATGAA 8 cut(s) 864, 1149, 1239, 1464, 2111, 2653, 2813, 2994
TspGWI ACGGA 5 cut(s) 1163, 1219, 1250, 1660, 3148
Tth111I GACNNNGTC 2 cut(s) 2269, 2484
Vha464I CTTAAG 1 cut(s) 2213
VneI GTGCAC 1 cut(s) 2382
VpaK11BI GGWCC 7 cut(s) 1067, 1637, 1769, 1898, 2399, 2486, 2753
XagI CCTNNNNNAGG 1 cut(s) 1632
XapI RAATTY 5 cut(s) 227, 497, 663, 1093, 3200
XceI RCATGY 4 cut(s) 1734, 2018, 2293, 3366
XcmI CCANNNNNNNNNTGG 2 cut(s) 796, 2855
XmiI GTMKAC 4 cut(s) 41, 642, 2164, 2479
XspI CTAG 7 cut(s) 15, 521, 726, 1587, 1818, 2483, 3087
ZraI GACGTC 1 cut(s) 1142
ZrmI AGTACT 1 cut(s) 519
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.