pycom16g23630

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000460
Physical Location & Seq
Reverse (-)
24814397 .. 24815771
1375 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g23630.2

Sequence Viewer

Length: 1068 bp
ATGGAAGTTGCTCCTACTGCCTCCCTCCCGCTGCTCACTGTCCTCATCCTCAACTCGACTCCCACCGACCTGACCTTCCCAACTCTTTCCTCTCCCCTTCTCTTTCTCCCTATAAATGCCAACTTACACAATTTGTCAGCCATAACGAACACAAGCACATTCTTTCTCTACTCATCAGCATATATACAAACATTTACCATGGCTTCCTACACTACAATGCTTATTCTGTTACCAATATTTCTTCTCTGCTTTGTGGTGGCTCCTGCCTCTACGGCCGACTTAAACCAAGACTTTGAGATTACATGGGGGGACGGACGTGCTAAGATTCTTAACAACGGCGAGCTTCTTACCCTTTCTCTCGACAAAGCCTCCGGTTCTGGATTTCAATCCAAACACGAGTATTTGTTCGGCAAGATCGACATGCAGCTCAAGCTTGTCCCTGGAAACTCCGCTGGCACCGTCACAGCCTACTACTTATCATCAAAAGGATCAACATGGGATGAGATAGACTTTGAGTTCTTGGGGAACTTGAGTGGAGACCCTTACATTCTTCACACCAATGTCTTCAGCCAAGGCAAAGGCAACAGAGAGCAGCAATTCTACCTCTGGTTTGACCCAACTGCCGACTTCCACACATATTCCATCCTCTGGAACTCGCAGCGCATTATATTCTCAGTAGATGGAACTCCCATCAGAGAGTTCAAGAACCAAGAGTTGAACGGCGTTCCGTTTCCAAAAAGCCAGCCGATGAGGATATACTCGAGCCTGTGGAATGCCGATGATTGGGCAACAAGGGGAGGACTTGTGAAGACCGATTGGAGCCAAGCTCCTTTCACCGCGTCTTACAAGAATTTCAATGCTGAAGCATGCGTCTGGACTTCTGGAGCCTCCTCTTGCAGTTCTGCAACTTCAAGTAATGCTAACAATGGAGCTTGGCTTTCTCAAGACTTGGACTCTACGAGCCAAGACAGGCTGAAATGGGTGCAGACCAACTACATGATTTACAATTACTGTGCTGACACCAAGAGATTTCCCCAAGGCCTCCCGGTGGAATGCACCGCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Glyco_hydro_16 XET_C

Protein Analysis

356

Amino Acids

39.43

Weight (kDa)

4.9

Isoelectric Point (pI)

34.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 455
AccB7I CCANNNNNTGG 1 cut(s) 648
AccII CGCG 1 cut(s) 839
AciI CCGC 4 cut(s) 29, 450, 837, 1059
AclWI GGATC 1 cut(s) 496
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 1 cut(s) 850
AcuI CTGAAG 2 cut(s) 550, 882
AfiI CCNNNNNNNGG 3 cut(s) 648, 783, 1048
AgsI TTSAA 5 cut(s) 386, 703, 718, 856, 912
AjiI CACGTC 1 cut(s) 317
AjnI CCWGG 1 cut(s) 439
AluBI AGCT 5 cut(s) 343, 427, 433, 827, 932
AluI AGCT 5 cut(s) 343, 427, 433, 827, 932
Alw26I GTCTC 1 cut(s) 531
AlwI GGATC 1 cut(s) 496
Ama87I CYCGRG 1 cut(s) 760
AoxI GGCC 2 cut(s) 273, 1039
ApeKI GCWGC 4 cut(s) 31, 424, 592, 658
ApoI RAATTY 1 cut(s) 850
AspLEI GCGC 1 cut(s) 663
AsuC2I CCSGG 1 cut(s) 1046
AsuHPI GGTGA 1 cut(s) 826
AvaI CYCGRG 1 cut(s) 760
BanI GGYRCC 1 cut(s) 455
BauI CACGAG 1 cut(s) 395
BbsI GAAGAC 2 cut(s) 556, 815
BbvI GCAGC 4 cut(s) 18, 436, 604, 670
BccI CCATC 3 cut(s) 650, 674, 698
BceAI ACGGC 3 cut(s) 288, 352, 736
BciT130I CCWGG 1 cut(s) 441
BcnI CCSGG 1 cut(s) 1046
BcoDI GTCTC 1 cut(s) 531
BglI GCCNNNNNGGC 1 cut(s) 272
BisI GCNGC 4 cut(s) 32, 425, 593, 659
BlsI GCNGC 4 cut(s) 33, 426, 594, 660
Bme1390I CCNGG 2 cut(s) 441, 1046
BmeT110I CYCGRG 1 cut(s) 760
BmgBI CACGTC 1 cut(s) 317
BmiI GGNNCC 4 cut(s) 261, 457, 821, 886
BmrFI CCNGG 2 cut(s) 441, 1046
BpiI GAAGAC 2 cut(s) 556, 815
BplI GAGNNNNNCTC 2 cut(s) 811, 843
BpmI CTGGAG 1 cut(s) 903
BpuEI CTTGAG 3 cut(s) 413, 550, 927
BpuMI CCSGG 1 cut(s) 1046
BsaBI GATNNNNATC 1 cut(s) 385
BsaI GGTCTC 1 cut(s) 531
BsaJI CCNNGG 4 cut(s) 198, 439, 571, 1036
BsaWI WCCGGW 1 cut(s) 371
BsaXI ACNNNNNCTCC 4 cut(s) 353, 383, 789, 819
Bsc4I CCNNNNNNNGG 3 cut(s) 648, 783, 1048
Bse8I GATNNNNATC 1 cut(s) 385
BseBI CCWGG 1 cut(s) 441
BseDI CCNNGG 4 cut(s) 198, 439, 571, 1036
BseGI GGATG 3 cut(s) 45, 505, 642
BseJI GATNNNNATC 1 cut(s) 385
BseLI CCNNNNNNNGG 3 cut(s) 648, 783, 1048
BseMII CTCAG 1 cut(s) 687
BseRI GAGGAG 1 cut(s) 880
BseX3I CGGCCG 1 cut(s) 273
BseXI GCAGC 4 cut(s) 18, 436, 604, 670
BsgI GTGCAG 1 cut(s) 1004
Bsh1236I CGCG 1 cut(s) 839
Bsh1285I CGRYCG 1 cut(s) 276
BshFI GGCC 2 cut(s) 275, 1041
BshNI GGYRCC 1 cut(s) 455
BsiEI CGRYCG 1 cut(s) 276
BsiHKCI CYCGRG 1 cut(s) 760
BsiSI CCGG 2 cut(s) 372, 1046
BslFI GGGAC 2 cut(s) 323, 422
BslI CCNNNNNNNGG 3 cut(s) 648, 783, 1048
BsmAI GTCTC 1 cut(s) 531
BsmFI GGGAC 2 cut(s) 323, 422
BsmI GAATGC 2 cut(s) 778, 1058
BsnI GGCC 2 cut(s) 275, 1041
Bso31I GGTCTC 1 cut(s) 531
BsoBI CYCGRG 1 cut(s) 760
Bsp143I GATC 2 cut(s) 414, 488
Bsp19I CCATGG 1 cut(s) 198
BspACI CCGC 4 cut(s) 29, 450, 837, 1059
BspANI GGCC 2 cut(s) 275, 1041
BspCNI CTCAG 1 cut(s) 686
BspFNI CGCG 1 cut(s) 839
BspLI GGNNCC 4 cut(s) 261, 457, 821, 886
BspPI GGATC 1 cut(s) 496
BspT107I GGYRCC 1 cut(s) 455
BspTNI GGTCTC 1 cut(s) 531
BssECI CCNNGG 4 cut(s) 198, 439, 571, 1036
BssMI GATC 2 cut(s) 414, 488
BssSI CACGAG 1 cut(s) 395
BssT1I CCWWGG 3 cut(s) 198, 571, 1036
Bst2BI CACGAG 1 cut(s) 395
Bst2UI CCWGG 1 cut(s) 441
Bst4CI ACNGT 3 cut(s) 40, 460, 1013
BstC8I GCNNGC 4 cut(s) 341, 454, 743, 868
BstDEI CTNAG 2 cut(s) 321, 673
BstDSI CCRYGG 1 cut(s) 198
BstF5I GGATG 3 cut(s) 45, 505, 642
BstFNI CGCG 1 cut(s) 839
BstHHI GCGC 1 cut(s) 663
BstKTI GATC 2 cut(s) 417, 491
BstMAI GTCTC 1 cut(s) 531
BstMBI GATC 2 cut(s) 414, 488
BstMCI CGRYCG 1 cut(s) 276
BstMWI GCNNNNNNNGC 3 cut(s) 17, 272, 430
BstNI CCWGG 1 cut(s) 441
BstNSI RCATGY 2 cut(s) 424, 870
BstSCI CCNGG 2 cut(s) 439, 1044
BstUI CGCG 1 cut(s) 839
BstV1I GCAGC 4 cut(s) 18, 436, 604, 670
BstV2I GAAGAC 2 cut(s) 556, 815
BstZI CGGCCG 1 cut(s) 273
BsuRI GGCC 2 cut(s) 275, 1041
BtgI CCRYGG 1 cut(s) 198
BtrI CACGTC 1 cut(s) 317
BtsCI GGATG 3 cut(s) 45, 505, 642
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 4 cut(s) 341, 454, 743, 868
CfoI GCGC 1 cut(s) 663
CseI GACGC 2 cut(s) 828, 859
CviAII CATG 6 cut(s) 199, 303, 421, 495, 867, 997
DdeI CTNAG 2 cut(s) 321, 673
DpnI GATC 2 cut(s) 416, 490
DpnII GATC 2 cut(s) 414, 488
EaeI YGGCCR 1 cut(s) 273
EagI CGGCCG 1 cut(s) 273
EclXI CGGCCG 1 cut(s) 273
Eco130I CCWWGG 3 cut(s) 198, 571, 1036
Eco147I AGGCCT 1 cut(s) 1041
Eco31I GGTCTC 1 cut(s) 531
Eco52I CGGCCG 1 cut(s) 273
Eco57I CTGAAG 2 cut(s) 550, 882
Eco88I CYCGRG 1 cut(s) 760
EcoRII CCWGG 1 cut(s) 439
EcoT14I CCWWGG 3 cut(s) 198, 571, 1036
ErhI CCWWGG 3 cut(s) 198, 571, 1036
FaeI CATG 6 cut(s) 202, 306, 424, 498, 870, 1000
FaqI GGGAC 2 cut(s) 323, 422
FatI CATG 6 cut(s) 198, 302, 420, 494, 866, 996
FauI CCCGC 1 cut(s) 36
Fnu4HI GCNGC 4 cut(s) 32, 425, 593, 659
FokI GGATG 3 cut(s) 32, 512, 629
Fsp4HI GCNGC 4 cut(s) 32, 425, 593, 659
GlaI GCGC 1 cut(s) 662
GluI GCNGC 4 cut(s) 32, 425, 593, 659
GsuI CTGGAG 1 cut(s) 903
HaeIII GGCC 2 cut(s) 275, 1041
HapII CCGG 2 cut(s) 372, 1046
HgaI GACGC 2 cut(s) 828, 859
HhaI GCGC 1 cut(s) 663
Hin1II CATG 6 cut(s) 202, 306, 424, 498, 870, 1000
Hin6I GCGC 1 cut(s) 661
HinP1I GCGC 1 cut(s) 661
HindIII AAGCTT 1 cut(s) 431
HinfI GANTC 3 cut(s) 58, 325, 953
HpaII CCGG 2 cut(s) 372, 1046
HphI GGTGA 1 cut(s) 826
Hpy188I TCNGA 1 cut(s) 695
Hpy188III TCNNGA 7 cut(s) 359, 378, 649, 703, 874, 882, 944
HpyAV CCTTC 2 cut(s) 85, 107
HpyCH4III ACNGT 3 cut(s) 40, 460, 1013
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 5 cut(s) 424, 897, 905, 985, 1056
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 272, 430
HpyF3I CTNAG 2 cut(s) 321, 673
HpySE526I ACGT 1 cut(s) 316
Hsp92II CATG 6 cut(s) 202, 306, 424, 498, 870, 1000
HspAI GCGC 1 cut(s) 661
Kzo9I GATC 2 cut(s) 414, 488
LmnI GCTCC 6 cut(s) 16, 265, 819, 832, 884, 929
Lsp1109I GCAGC 4 cut(s) 18, 436, 604, 670
MaeII ACGT 1 cut(s) 316
MaeIII GTNAC 2 cut(s) 228, 460
MalI GATC 2 cut(s) 416, 490
MboI GATC 2 cut(s) 414, 488
MboII GAAGA 4 cut(s) 233, 542, 556, 820
MluCI AATT 4 cut(s) 130, 596, 850, 1006
MlyI GAGTC 2 cut(s) 52, 947
MseI TTAA 2 cut(s) 281, 330
MslI CAYNNNNRTG 2 cut(s) 215, 558
MspA1I CMGCKG 2 cut(s) 31, 452
MspI CCGG 2 cut(s) 372, 1046
MspR9I CCNGG 2 cut(s) 441, 1046
Mva1269I GAATGC 2 cut(s) 778, 1058
MvaI CCWGG 1 cut(s) 441
MvnI CGCG 1 cut(s) 839
MwoI GCNNNNNNNGC 3 cut(s) 17, 272, 430
NciI CCSGG 1 cut(s) 1046
NcoI CCATGG 1 cut(s) 198
NdeII GATC 2 cut(s) 414, 488
NlaIII CATG 6 cut(s) 202, 306, 424, 498, 870, 1000
NlaIV GGNNCC 4 cut(s) 261, 457, 821, 886
NmuCI GTSAC 1 cut(s) 460
NspI RCATGY 2 cut(s) 424, 870
PaeI GCATGC 1 cut(s) 870
PaeR7I CTCGAG 1 cut(s) 760
PceI AGGCCT 1 cut(s) 1041
PcsI WCGNNNNNNNCGW 1 cut(s) 414
PctI GAATGC 2 cut(s) 778, 1058
PfeI GAWTC 1 cut(s) 325
PflMI CCANNNNNTGG 1 cut(s) 648
PkrI GCNGC 4 cut(s) 33, 426, 594, 660
PleI GAGTC 2 cut(s) 52, 947
PpsI GAGTC 2 cut(s) 52, 947
Psp6I CCWGG 1 cut(s) 439
PspGI CCWGG 1 cut(s) 439
PspN4I GGNNCC 4 cut(s) 261, 457, 821, 886
PspXI VCTCGAGB 1 cut(s) 760
RseI CAYNNNNRTG 2 cut(s) 215, 558
SaqAI TTAA 2 cut(s) 281, 330
SatI GCNGC 4 cut(s) 32, 425, 593, 659
Sau3AI GATC 2 cut(s) 414, 488
SchI GAGTC 2 cut(s) 52, 947
ScrFI CCNGG 2 cut(s) 441, 1046
SetI ASST 9 cut(s) 72, 77, 319, 345, 429, 435, 606, 829, 934
Sfr274I CTCGAG 1 cut(s) 760
SlaI CTCGAG 1 cut(s) 760
SmiMI CAYNNNNRTG 2 cut(s) 215, 558
SmlI CTYRAG 4 cut(s) 428, 529, 760, 942
SmoI CTYRAG 4 cut(s) 428, 529, 760, 942
SphI GCATGC 1 cut(s) 870
Sse9I AATT 4 cut(s) 130, 596, 850, 1006
SseBI AGGCCT 1 cut(s) 1041
SsiI CCGC 4 cut(s) 29, 450, 837, 1059
SspI AATATT 1 cut(s) 237
StuI AGGCCT 1 cut(s) 1041
StyD4I CCNGG 2 cut(s) 439, 1044
StyI CCWWGG 3 cut(s) 198, 571, 1036
TaaI ACNGT 3 cut(s) 40, 460, 1013
TaiI ACGT 1 cut(s) 319
TaqI TCGA 4 cut(s) 56, 360, 417, 761
TaqII GACCGA 1 cut(s) 827
TasI AATT 4 cut(s) 130, 596, 850, 1006
TfiI GAWTC 1 cut(s) 325
Tru1I TTAA 2 cut(s) 281, 330
Tru9I TTAA 2 cut(s) 281, 330
TscAI CASTG 1 cut(s) 43
TseFI GTSAC 1 cut(s) 460
TseI GCWGC 4 cut(s) 31, 424, 592, 658
Tsp45I GTSAC 1 cut(s) 460
TspDTI ATGAA 1 cut(s) 1053
TspGWI ACGGA 2 cut(s) 327, 717
TspRI CASTG 1 cut(s) 43
Van91I CCANNNNNTGG 1 cut(s) 648
XapI RAATTY 1 cut(s) 850
XceI RCATGY 2 cut(s) 424, 870
XhoI CTCGAG 1 cut(s) 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.