RLG00000009034

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
45364053 .. 45365093
1041 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009034

Sequence Viewer

Length: 810 bp
ATGGTTGCCGCTGCTGGTAATTTTAACCAAGACTTTCAGGTTACATGGGGGGACGGTCGAGCCAACATAGTCAACGACGGCCAACTTCTTACTCTCTCGCTCGACAAAGCCTCTGGCTCTGGTTTTGAATCCAAAAACGAATACCTCTTCGGCAAGATTGACATGCAGCTCAAGCTTGTCGCCGGAAACTCTGCTGGCACCGTCACCGCTTACTATTTAAAATCAGAAGGGTCTACATGGGATGAGATAGACTTTGAGTTCTTGGGAAACTTGAGTGGCAACCCTTACACTCTTCACACCAATGTCTTCAGCCAAGGCAAAGGAAACAGAGAACAGCAATTCCATCTCTGGTTCGACCCAACTGCTGATTTCCACACCTATTCCATTCTCTGGAATCCACAGCGCATTGTTTTCTCTGTTGATGGTACTCCCATTAGAGAGTTCAAGAACCAAGAGTCGAATGGTGTTCCATTCCCGAAGAGCCAAGCAATGAGAATACACTCGAGCCTCTGGAATGCTGATGATTGGGCAACAATGGGAGGACGTGTAAAGACGGATTGGAATGCAGCTCCGTTCACTGCCTCTTACAGGAATTTCAACGCTGAAGCATGCATTTGGGCTTCAGGATCATCTTCTTGCGGTTCAAGCAGTGCCCCTGCTTCGACTAATGGAGATTGGCTTTCGCAAGAATTGGACAGTGCTAGTTATGAAAAGCTGAGTTGGGTGCAGAAAAACTACATGATCTACAATTACTGCACAGATGTCAACAGATTCCCTCAGGGTCTCCCCGTTGAATGCAGCACTTCATAG

Protein Analysis

270

Amino Acids

29.89

Weight (kDa)

4.89

Isoelectric Point (pI)

28.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 8 - 188 4.8e-68 Glycosyl hydrolases family 16
XET_C PF06955 222 - 266 1.1e-19 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 197
AccB7I CCANNNNNTGG 1 cut(s) 390
AccI GTMKAC 1 cut(s) 233
AciI CCGC 3 cut(s) 9, 207, 639
AclWI GGATC 1 cut(s) 634
AcoI YGGCCR 1 cut(s) 79
AcsI RAATTY 1 cut(s) 592
AcuI CTGAAG 3 cut(s) 292, 606, 624
AfaI GTAC 1 cut(s) 427
AfiI CCNNNNNNNGG 2 cut(s) 390, 588
AflIII ACRYGT 1 cut(s) 544
AgsI TTSAA 5 cut(s) 128, 445, 598, 645, 794
AjiI CACGTC 1 cut(s) 545
AloI GAACNNNNNNTCC 2 cut(s) 324, 356
AluBI AGCT 4 cut(s) 169, 175, 569, 715
AluI AGCT 4 cut(s) 169, 175, 569, 715
Alw26I GTCTC 1 cut(s) 788
AlwI GGATC 1 cut(s) 634
Ama87I CYCGRG 1 cut(s) 502
AoxI GGCC 1 cut(s) 79
ApeKI GCWGC 4 cut(s) 11, 166, 566, 798
ApoI RAATTY 1 cut(s) 592
AspLEI GCGC 1 cut(s) 405
AsuHPI GGTGA 1 cut(s) 196
AvaI CYCGRG 1 cut(s) 502
AxyI CCTNAGG 1 cut(s) 777
BaeGI GKGCMC 1 cut(s) 655
BanI GGYRCC 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 298
BbvI GCAGC 2 cut(s) 178, 578
BccI CCATC 2 cut(s) 351, 416
BceAI ACGGC 1 cut(s) 94
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BcoDI GTCTC 1 cut(s) 788
BfaI CTAG 1 cut(s) 702
BisI GCNGC 5 cut(s) 9, 12, 167, 567, 799
BlsI GCNGC 5 cut(s) 10, 13, 168, 568, 800
BmeT110I CYCGRG 1 cut(s) 502
BmgBI CACGTC 1 cut(s) 545
BmiI GGNNCC 1 cut(s) 199
BpiI GAAGAC 1 cut(s) 298
BpuEI CTTGAG 2 cut(s) 155, 292
BsaI GGTCTC 1 cut(s) 788
BsaJI CCNNGG 1 cut(s) 313
BsaXI ACNNNNNCTCC 2 cut(s) 531, 561
Bsc4I CCNNNNNNNGG 2 cut(s) 390, 588
Bse21I CCTNAGG 1 cut(s) 777
Bse3DI GCAATG 1 cut(s) 495
BseDI CCNNGG 1 cut(s) 313
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 2 cut(s) 390, 588
BseMI GCAATG 1 cut(s) 495
BseMII CTCAG 2 cut(s) 707, 791
BseSI GKGCMC 1 cut(s) 655
BseXI GCAGC 2 cut(s) 178, 578
BsgI GTGCAG 2 cut(s) 739, 746
Bsh1285I CGRYCG 1 cut(s) 58
BshFI GGCC 1 cut(s) 81
BshNI GGYRCC 1 cut(s) 197
BsiEI CGRYCG 1 cut(s) 58
BsiHKCI CYCGRG 1 cut(s) 502
BsiSI CCGG 1 cut(s) 183
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 2 cut(s) 390, 588
BsmAI GTCTC 1 cut(s) 788
BsmFI GGGAC 1 cut(s) 65
BsmI GAATGC 3 cut(s) 520, 568, 800
BsnI GGCC 1 cut(s) 81
Bso31I GGTCTC 1 cut(s) 788
BsoBI CYCGRG 1 cut(s) 502
Bsp1286I GDGCHC 1 cut(s) 655
Bsp143I GATC 2 cut(s) 626, 741
BspACI CCGC 3 cut(s) 9, 207, 639
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 2 cut(s) 708, 790
BspLI GGNNCC 1 cut(s) 199
BspPI GGATC 1 cut(s) 634
BspQI GCTCTTC 1 cut(s) 473
BspT107I GGYRCC 1 cut(s) 197
BspTNI GGTCTC 1 cut(s) 788
BsrDI GCAATG 1 cut(s) 495
BssECI CCNNGG 1 cut(s) 313
BssMI GATC 2 cut(s) 626, 741
BssT1I CCWWGG 1 cut(s) 313
Bst4CI ACNGT 3 cut(s) 56, 202, 698
Bst6I CTCTTC 3 cut(s) 152, 297, 473
BstC8I GCNNGC 2 cut(s) 196, 610
BstDEI CTNAG 2 cut(s) 716, 777
BstENI CCTNNNNNAGG 1 cut(s) 586
BstF5I GGATG 1 cut(s) 247
BstHHI GCGC 1 cut(s) 405
BstKTI GATC 2 cut(s) 629, 744
BstMAI GTCTC 1 cut(s) 788
BstMBI GATC 2 cut(s) 626, 741
BstMCI CGRYCG 1 cut(s) 58
BstMWI GCNNNNNNNGC 2 cut(s) 172, 645
BstNSI RCATGY 2 cut(s) 166, 612
BstSLI GKGCMC 1 cut(s) 655
BstV1I GCAGC 2 cut(s) 178, 578
BstV2I GAAGAC 1 cut(s) 298
Bsu36I CCTNAGG 1 cut(s) 777
BsuRI GGCC 1 cut(s) 81
BtrI CACGTC 1 cut(s) 545
BtsCI GGATG 1 cut(s) 247
BtsI GCAGTG 2 cut(s) 576, 655
BtsIMutI CAGTG 3 cut(s) 576, 655, 703
Cac8I GCNNGC 2 cut(s) 196, 610
CfoI GCGC 1 cut(s) 405
Csp6I GTAC 1 cut(s) 426
CviAII CATG 5 cut(s) 45, 163, 237, 609, 739
CviQI GTAC 1 cut(s) 426
DdeI CTNAG 2 cut(s) 716, 777
DpnI GATC 2 cut(s) 628, 743
DpnII GATC 2 cut(s) 626, 741
DraI TTTAAA 1 cut(s) 219
EaeI YGGCCR 1 cut(s) 79
Eam1104I CTCTTC 3 cut(s) 152, 297, 473
EarI CTCTTC 3 cut(s) 152, 297, 473
Eco130I CCWWGG 1 cut(s) 313
Eco31I GGTCTC 1 cut(s) 788
Eco57I CTGAAG 3 cut(s) 292, 606, 624
Eco81I CCTNAGG 1 cut(s) 777
Eco88I CYCGRG 1 cut(s) 502
EcoNI CCTNNNNNAGG 1 cut(s) 586
EcoT14I CCWWGG 1 cut(s) 313
EcoT22I ATGCAT 1 cut(s) 614
ErhI CCWWGG 1 cut(s) 313
FaeI CATG 5 cut(s) 48, 166, 240, 612, 742
FaiI YATR 8 cut(s) 46, 68, 164, 238, 610, 708, 740, 808
FaqI GGGAC 1 cut(s) 65
FatI CATG 5 cut(s) 44, 162, 236, 608, 738
FblI GTMKAC 1 cut(s) 233
Fnu4HI GCNGC 5 cut(s) 9, 12, 167, 567, 799
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 5 cut(s) 9, 12, 167, 567, 799
FspBI CTAG 1 cut(s) 702
GlaI GCGC 1 cut(s) 404
GluI GCNGC 5 cut(s) 9, 12, 167, 567, 799
HaeIII GGCC 1 cut(s) 81
HapII CCGG 1 cut(s) 183
HhaI GCGC 1 cut(s) 405
Hin1II CATG 5 cut(s) 48, 166, 240, 612, 742
Hin6I GCGC 1 cut(s) 403
HinP1I GCGC 1 cut(s) 403
HincII GTYRAC 2 cut(s) 73, 766
HindII GTYRAC 2 cut(s) 73, 766
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 4 cut(s) 128, 394, 455, 771
HpaII CCGG 1 cut(s) 183
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 4 cut(s) 73, 234, 576, 766
Hpy188I TCNGA 1 cut(s) 226
Hpy188III TCNNGA 5 cut(s) 391, 445, 475, 511, 624
Hpy8I GTNNAC 4 cut(s) 73, 234, 576, 766
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 221
HpyCH4III ACNGT 3 cut(s) 56, 202, 698
HpyCH4IV ACGT 1 cut(s) 544
HpyCH4V TGCA 6 cut(s) 166, 566, 612, 727, 756, 798
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 645
HpyF3I CTNAG 2 cut(s) 716, 777
HpySE526I ACGT 1 cut(s) 544
Hsp92II CATG 5 cut(s) 48, 166, 240, 612, 742
HspAI GCGC 1 cut(s) 403
Kzo9I GATC 2 cut(s) 626, 741
LguI GCTCTTC 1 cut(s) 473
LmnI GCTCC 1 cut(s) 574
Lsp1109I GCAGC 2 cut(s) 178, 578
MaeI CTAG 1 cut(s) 702
MaeII ACGT 1 cut(s) 544
MaeIII GTNAC 2 cut(s) 40, 202
MalI GATC 2 cut(s) 628, 743
MboI GATC 2 cut(s) 626, 741
MboII GAAGA 5 cut(s) 139, 284, 298, 490, 624
MhlI GDGCHC 1 cut(s) 655
MluCI AATT 5 cut(s) 19, 338, 592, 689, 748
MlyI GAGTC 1 cut(s) 464
MnlI CCTC 6 cut(s) 121, 155, 518, 533, 592, 786
Mph1103I ATGCAT 1 cut(s) 614
MseI TTAA 2 cut(s) 24, 218
MslI CAYNNNNRTG 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 1 cut(s) 183
Mva1269I GAATGC 3 cut(s) 520, 568, 800
MwoI GCNNNNNNNGC 2 cut(s) 172, 645
NdeII GATC 2 cut(s) 626, 741
NlaIII CATG 5 cut(s) 48, 166, 240, 612, 742
NlaIV GGNNCC 1 cut(s) 199
NmuCI GTSAC 1 cut(s) 202
NsiI ATGCAT 1 cut(s) 614
NspI RCATGY 2 cut(s) 166, 612
PaeI GCATGC 1 cut(s) 612
PaeR7I CTCGAG 1 cut(s) 502
PciSI GCTCTTC 1 cut(s) 473
PctI GAATGC 3 cut(s) 520, 568, 800
PfeI GAWTC 3 cut(s) 128, 394, 771
PflMI CCANNNNNTGG 1 cut(s) 390
PkrI GCNGC 5 cut(s) 10, 13, 168, 568, 800
PleI GAGTC 1 cut(s) 463
PpsI GAGTC 1 cut(s) 463
PspN4I GGNNCC 1 cut(s) 199
PspXI VCTCGAGB 1 cut(s) 502
RsaI GTAC 1 cut(s) 427
RsaNI GTAC 1 cut(s) 426
RseI CAYNNNNRTG 1 cut(s) 300
SapI GCTCTTC 1 cut(s) 473
SaqAI TTAA 2 cut(s) 24, 218
SatI GCNGC 5 cut(s) 9, 12, 167, 567, 799
Sau3AI GATC 2 cut(s) 626, 741
SchI GAGTC 1 cut(s) 464
SduI GDGCHC 1 cut(s) 655
SetI ASST 8 cut(s) 42, 147, 171, 177, 380, 547, 571, 717
Sfr274I CTCGAG 1 cut(s) 502
SlaI CTCGAG 1 cut(s) 502
SmiMI CAYNNNNRTG 1 cut(s) 300
SmlI CTYRAG 3 cut(s) 170, 271, 502
SmoI CTYRAG 3 cut(s) 170, 271, 502
SphI GCATGC 1 cut(s) 612
Sse9I AATT 5 cut(s) 19, 338, 592, 689, 748
SsiI CCGC 3 cut(s) 9, 207, 639
SspMI CTAG 1 cut(s) 702
StyI CCWWGG 1 cut(s) 313
TaaI ACNGT 3 cut(s) 56, 202, 698
TaiI ACGT 1 cut(s) 547
TaqI TCGA 6 cut(s) 58, 102, 354, 458, 503, 662
TasI AATT 5 cut(s) 19, 338, 592, 689, 748
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 3 cut(s) 128, 394, 771
Tru1I TTAA 2 cut(s) 24, 218
Tru9I TTAA 2 cut(s) 24, 218
TscAI CASTG 3 cut(s) 583, 655, 703
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 4 cut(s) 11, 166, 566, 798
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 2 cut(s) 723, 795
TspGWI ACGGA 2 cut(s) 561, 569
TspRI CASTG 3 cut(s) 583, 655, 703
Van91I CCANNNNNTGG 1 cut(s) 390
XagI CCTNNNNNAGG 1 cut(s) 586
XapI RAATTY 1 cut(s) 592
XceI RCATGY 2 cut(s) 166, 612
XcmI CCANNNNNNNNNTGG 1 cut(s) 458
XhoI CTCGAG 1 cut(s) 502
XmiI GTMKAC 1 cut(s) 233
XspI CTAG 1 cut(s) 702
Zsp2I ATGCAT 1 cut(s) 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.