Rh4BG109600

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000460
Physical Location & Seq
Reverse (-)
18571294 .. 18573017
1724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG109600.1

Sequence Viewer

Length: 1002 bp
ATGCCCAATTGCCCAATTGCCCATGCATTCTCATCTATATGTACCTACCAAGCTCTTCTCTTCTACTTCAACTCATCCATTCTTCACCTTCTTCTCTTCATCAATTCTTCAACGAATCCTCACTTTCATACATTTAGCTACTTCATGGCTTCTTCCACTTCAGTAGTGTTGCTGATTATTCCTCTTCTTGTTAGCTCTTTCATGGTTGCTTCTGCGGGTAACTTCAACGAAGACTTTAAAATTACATGGGGGGACGGTCGAGCCAAGATACTCAACGACGGTCAACTTCTTACTCTCTCGCTCGACAAAGCCTCTGGCTCTGGTTTTGAATCCCAAAACGAATATCTATTCGGCAAGATTGACATGCAGCTCAAGCTTGTCGCCGGAAACTCTGCTGGAACTGTCACAGCCTATTATTTGAAATCAGAAGGGTCTACTTGGGATGAGATAGACTTCGAGTTCTTGGGCAACTTGAGTGGCGACCCTTACATTCTTCACACCAATATCTTCAGCCAAGGCAAAGGAAACCGAGAGCAGCAATTTCACCTCTGGTTCGACCCAACTGCTAATTTCCACACCTATTCCATTCTCTGGAATCCACAGCGCATTGTTTTTTCAGTTGATGGCACTCCCATTAGAGAGTTCAAGAATCAAGAGTCGAAGGGTGTTCCATTCTTGAAGAGCCAAGCAATGAGAATACACTCGAGCCTTTGGAACGCCGATGATTGGGCAACAAGAGGTGGACTTGTGAAGACAGATTGGAGTGCAGCTCCTTTCACTGCCTCTTACAGGAATTTCAATGCTGAAGCTTGCATCTGGTCTTCTGGAGCATCTTCTTGCAGTTCAACTAGTACTCAAAATGGCGATTGGTTATCACAAGAGCTGGACCGTACAAGTCAAGAAAGGATGAAATGGGTGCAGAACAACTACATGATCTACAATTACTGCGCAGATGTCAAGCGGTTTCCTCAGGGCCTCCCTGTAGAATGCAACACTTCTTAG

Protein Analysis

333

Amino Acids

37.45

Weight (kDa)

5.74

Isoelectric Point (pI)

31.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 76 - 255 1.9e-65 Glycosyl hydrolases family 16
XET_C PF06955 287 - 330 1.8e-20 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 949
AccB7I CCANNNNNTGG 1 cut(s) 591
AccI GTMKAC 1 cut(s) 434
AciI CCGC 2 cut(s) 215, 961
AcsI RAATTY 1 cut(s) 793
AcuI CTGAAG 3 cut(s) 144, 493, 825
AfaI GTAC 3 cut(s) 43, 853, 892
AfiI CCNNNNNNNGG 3 cut(s) 591, 726, 789
AgsI TTSAA 9 cut(s) 70, 111, 226, 329, 421, 646, 679, 799, 846
AhlI ACTAGT 1 cut(s) 848
AluBI AGCT 8 cut(s) 53, 138, 195, 370, 376, 770, 809, 883
AluI AGCT 8 cut(s) 53, 138, 195, 370, 376, 770, 809, 883
Ama87I CYCGRG 1 cut(s) 703
AoxI GGCC 1 cut(s) 973
ApeKI GCWGC 3 cut(s) 367, 535, 767
ApoI RAATTY 1 cut(s) 793
AspLEI GCGC 2 cut(s) 606, 950
AspS9I GGNCC 2 cut(s) 886, 973
AsuHPI GGTGA 2 cut(s) 77, 536
AvaI CYCGRG 1 cut(s) 703
AvaII GGWCC 1 cut(s) 886
AxyI CCTNAGG 1 cut(s) 969
BbsI GAAGAC 3 cut(s) 237, 758, 813
BbvI GCAGC 3 cut(s) 379, 547, 779
BccI CCATC 1 cut(s) 617
BcgI CGANNNNNNTGC 2 cut(s) 545, 579
BcuI ACTAGT 1 cut(s) 848
BfaI CTAG 1 cut(s) 849
BfmI CTRYAG 1 cut(s) 981
BisI GCNGC 3 cut(s) 368, 536, 768
BlsI GCNGC 3 cut(s) 369, 537, 769
BmcAI AGTACT 1 cut(s) 853
Bme18I GGWCC 1 cut(s) 886
BmeT110I CYCGRG 1 cut(s) 703
BmgT120I GGNCC 2 cut(s) 886, 973
BmsI GCATC 2 cut(s) 822, 839
BpiI GAAGAC 3 cut(s) 237, 758, 813
BplI GAGNNNNNCTC 2 cut(s) 754, 786
BpmI CTGGAG 1 cut(s) 846
BpuEI CTTGAG 2 cut(s) 356, 493
BsaJI CCNNGG 1 cut(s) 514
Bsc4I CCNNNNNNNGG 3 cut(s) 591, 726, 789
Bse21I CCTNAGG 1 cut(s) 969
Bse3DI GCAATG 1 cut(s) 696
BseDI CCNNGG 1 cut(s) 514
BseGI GGATG 3 cut(s) 74, 448, 912
BseLI CCNNNNNNNGG 3 cut(s) 591, 726, 789
BseMI GCAATG 1 cut(s) 696
BseMII CTCAG 1 cut(s) 983
BseXI GCAGC 3 cut(s) 379, 547, 779
BsgI GTGCAG 2 cut(s) 786, 938
Bsh1285I CGRYCG 1 cut(s) 259
BshFI GGCC 1 cut(s) 975
BsiEI CGRYCG 1 cut(s) 259
BsiHKCI CYCGRG 1 cut(s) 703
BsiSI CCGG 1 cut(s) 384
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 3 cut(s) 591, 726, 789
BsmFI GGGAC 1 cut(s) 266
BsmI GAATGC 2 cut(s) 26, 992
BsnI GGCC 1 cut(s) 975
BsoBI CYCGRG 1 cut(s) 703
Bsp143I GATC 1 cut(s) 933
BspACI CCGC 2 cut(s) 215, 961
BspANI GGCC 1 cut(s) 975
BspCNI CTCAG 1 cut(s) 982
BspQI GCTCTTC 2 cut(s) 60, 674
BsrDI GCAATG 1 cut(s) 696
BssECI CCNNGG 1 cut(s) 514
BssMI GATC 1 cut(s) 933
BssT1I CCWWGG 1 cut(s) 514
Bst4CI ACNGT 4 cut(s) 257, 281, 403, 890
Bst6I CTCTTC 5 cut(s) 60, 65, 101, 189, 674
BstC8I GCNNGC 1 cut(s) 811
BstDEI CTNAG 2 cut(s) 969, 999
BstENI CCTNNNNNAGG 1 cut(s) 787
BstF5I GGATG 3 cut(s) 74, 448, 912
BstHHI GCGC 2 cut(s) 606, 950
BstKTI GATC 1 cut(s) 936
BstMBI GATC 1 cut(s) 933
BstMCI CGRYCG 1 cut(s) 259
BstMWI GCNNNNNNNGC 1 cut(s) 373
BstNSI RCATGY 1 cut(s) 367
BstSFI CTRYAG 1 cut(s) 981
BstV1I GCAGC 3 cut(s) 379, 547, 779
BstV2I GAAGAC 3 cut(s) 237, 758, 813
Bsu36I CCTNAGG 1 cut(s) 969
BsuRI GGCC 1 cut(s) 975
BtsCI GGATG 3 cut(s) 74, 448, 912
BtsI GCAGTG 1 cut(s) 777
BtsIMutI CAGTG 1 cut(s) 777
Cac8I GCNNGC 1 cut(s) 811
CfoI GCGC 2 cut(s) 606, 950
Cfr13I GGNCC 2 cut(s) 886, 973
Csp6I GTAC 3 cut(s) 42, 852, 891
CspCI CAANNNNNGTGG 2 cut(s) 457, 492
CviAII CATG 6 cut(s) 23, 145, 202, 246, 364, 931
CviQI GTAC 3 cut(s) 42, 852, 891
DdeI CTNAG 2 cut(s) 969, 999
DpnI GATC 1 cut(s) 935
DpnII GATC 1 cut(s) 933
DraI TTTAAA 1 cut(s) 238
Eam1104I CTCTTC 5 cut(s) 60, 65, 101, 189, 674
EarI CTCTTC 5 cut(s) 60, 65, 101, 189, 674
Eco130I CCWWGG 1 cut(s) 514
Eco47I GGWCC 1 cut(s) 886
Eco57I CTGAAG 3 cut(s) 144, 493, 825
Eco81I CCTNAGG 1 cut(s) 969
Eco88I CYCGRG 1 cut(s) 703
EcoNI CCTNNNNNAGG 1 cut(s) 787
EcoO109I RGGNCCY 1 cut(s) 973
EcoT14I CCWWGG 1 cut(s) 514
EcoT22I ATGCAT 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 514
FaeI CATG 6 cut(s) 26, 148, 205, 249, 367, 934
FaiI YATR 9 cut(s) 24, 38, 40, 129, 146, 203, 247, 365, 932
FaqI GGGAC 1 cut(s) 266
FatI CATG 6 cut(s) 22, 144, 201, 245, 363, 930
FauI CCCGC 1 cut(s) 208
FblI GTMKAC 1 cut(s) 434
Fnu4HI GCNGC 3 cut(s) 368, 536, 768
FokI GGATG 3 cut(s) 61, 455, 919
Fsp4HI GCNGC 3 cut(s) 368, 536, 768
FspBI CTAG 1 cut(s) 849
FspI TGCGCA 1 cut(s) 949
GlaI GCGC 2 cut(s) 605, 949
GluI GCNGC 3 cut(s) 368, 536, 768
GsuI CTGGAG 1 cut(s) 846
HaeIII GGCC 1 cut(s) 975
HapII CCGG 1 cut(s) 384
HhaI GCGC 2 cut(s) 606, 950
Hin1II CATG 6 cut(s) 26, 148, 205, 249, 367, 934
Hin6I GCGC 2 cut(s) 604, 948
HinP1I GCGC 2 cut(s) 604, 948
HincII GTYRAC 1 cut(s) 284
HindII GTYRAC 1 cut(s) 284
HindIII AAGCTT 2 cut(s) 374, 807
HinfI GANTC 5 cut(s) 115, 329, 595, 649, 656
HpaII CCGG 1 cut(s) 384
HphI GGTGA 2 cut(s) 77, 536
Hpy166II GTNNAC 3 cut(s) 284, 435, 743
Hpy188I TCNGA 1 cut(s) 427
Hpy188III TCNNGA 6 cut(s) 592, 646, 653, 676, 825, 899
Hpy8I GTNNAC 3 cut(s) 284, 435, 743
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 3 cut(s) 98, 422, 655
HpyCH4III ACNGT 4 cut(s) 257, 281, 403, 890
HpyCH4V TGCA 7 cut(s) 26, 367, 767, 813, 840, 919, 990
HpyF10VI GCNNNNNNNGC 1 cut(s) 373
HpyF3I CTNAG 2 cut(s) 969, 999
Hsp92II CATG 6 cut(s) 26, 148, 205, 249, 367, 934
HspAI GCGC 2 cut(s) 604, 948
Kzo9I GATC 1 cut(s) 933
LguI GCTCTTC 2 cut(s) 60, 674
LmnI GCTCC 2 cut(s) 775, 827
Lsp1109I GCAGC 3 cut(s) 379, 547, 779
LweI GCATC 2 cut(s) 822, 839
MaeI CTAG 1 cut(s) 849
MaeIII GTNAC 2 cut(s) 218, 403
MalI GATC 1 cut(s) 935
MboI GATC 1 cut(s) 933
MfeI CAATTG 2 cut(s) 7, 15
MluCI AATT 8 cut(s) 7, 15, 103, 240, 539, 568, 793, 940
MlyI GAGTC 1 cut(s) 665
MnlI CCTC 8 cut(s) 129, 192, 322, 557, 731, 793, 978, 986
Mph1103I ATGCAT 1 cut(s) 28
MseI TTAA 1 cut(s) 237
MslI CAYNNNNRTG 1 cut(s) 37
MspI CCGG 1 cut(s) 384
MunI CAATTG 2 cut(s) 7, 15
Mva1269I GAATGC 2 cut(s) 26, 992
MwoI GCNNNNNNNGC 1 cut(s) 373
NdeII GATC 1 cut(s) 933
NlaIII CATG 6 cut(s) 26, 148, 205, 249, 367, 934
NmuCI GTSAC 1 cut(s) 403
NsbI TGCGCA 1 cut(s) 949
NsiI ATGCAT 1 cut(s) 28
NspI RCATGY 1 cut(s) 367
PaeR7I CTCGAG 1 cut(s) 703
PciSI GCTCTTC 2 cut(s) 60, 674
PctI GAATGC 2 cut(s) 26, 992
PfeI GAWTC 4 cut(s) 115, 329, 595, 649
PflMI CCANNNNNTGG 1 cut(s) 591
PkrI GCNGC 3 cut(s) 369, 537, 769
PleI GAGTC 1 cut(s) 664
PpsI GAGTC 1 cut(s) 664
PspPI GGNCC 2 cut(s) 886, 973
PspXI VCTCGAGB 1 cut(s) 703
RsaI GTAC 3 cut(s) 43, 853, 892
RsaNI GTAC 3 cut(s) 42, 852, 891
RseI CAYNNNNRTG 1 cut(s) 37
SapI GCTCTTC 2 cut(s) 60, 674
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 3 cut(s) 368, 536, 768
Sau3AI GATC 1 cut(s) 933
Sau96I GGNCC 2 cut(s) 886, 973
ScaI AGTACT 1 cut(s) 853
SchI GAGTC 1 cut(s) 665
SfaNI GCATC 2 cut(s) 822, 839
SfcI CTRYAG 1 cut(s) 981
Sfr274I CTCGAG 1 cut(s) 703
SinI GGWCC 1 cut(s) 886
SlaI CTCGAG 1 cut(s) 703
SmiMI CAYNNNNRTG 1 cut(s) 37
SmlI CTYRAG 3 cut(s) 371, 472, 703
SmoI CTYRAG 3 cut(s) 371, 472, 703
SpeI ACTAGT 1 cut(s) 848
Sse9I AATT 8 cut(s) 7, 15, 103, 240, 539, 568, 793, 940
SsiI CCGC 2 cut(s) 215, 961
SspMI CTAG 1 cut(s) 849
StyI CCWWGG 1 cut(s) 514
TaaI ACNGT 4 cut(s) 257, 281, 403, 890
TaqI TCGA 6 cut(s) 259, 303, 456, 555, 659, 704
TasI AATT 8 cut(s) 7, 15, 103, 240, 539, 568, 793, 940
TatI WGTACW 1 cut(s) 851
TfiI GAWTC 4 cut(s) 115, 329, 595, 649
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 1 cut(s) 784
TseFI GTSAC 1 cut(s) 403
TseI GCWGC 3 cut(s) 367, 535, 767
Tsp45I GTSAC 1 cut(s) 403
TspDTI ATGAA 5 cut(s) 88, 116, 133, 190, 923
TspRI CASTG 1 cut(s) 784
Van91I CCANNNNNTGG 1 cut(s) 591
VpaK11BI GGWCC 1 cut(s) 886
XagI CCTNNNNNAGG 1 cut(s) 787
XapI RAATTY 1 cut(s) 793
XceI RCATGY 1 cut(s) 367
XhoI CTCGAG 1 cut(s) 703
XmiI GTMKAC 1 cut(s) 434
XspI CTAG 1 cut(s) 849
ZrmI AGTACT 1 cut(s) 853
Zsp2I ATGCAT 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.