Prupe.1G088900_v2.0.a1

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000460
Physical Location & Seq
Forward (+)
6644550 .. 6646008
1459 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G088900.1

Sequence Viewer

Length: 891 bp
ATGGCTTCCCTCAAATCATCTTTTTCATTCATACTACTGATTGCTCTTCTTGCTGCTAGCTCTTTGGTGGTTGCCTCTGCTGGTAACTTCAACCAGGACTTTCAGATAACATGGGGAGACGGTCGAGCTAAGATTCTCAACAATGGCGAGCTTCTTACTCTCTCACTTGACAAAGCCTCTGGCTCTGGCTTTCAATCCAAAAATGAGTATTTGTTTGGCAAGATTGATATGCAGCTCAAGCTTGTCCCTGGAAATTCTGCTGGCACTGTCACAGCCTACTATTTATCCTCAAAGGGTTCAACCTGGGATGAGATAGATTTTGAGTTCTTGGGGAACTTGAGTGGTGATCCTTACATTCTTCACACCAATGTCTTCAGCCAAGGCAAAGGAAACAGAGAGCAACAATTCTATCTCTGGTTTGACCCAACTGCTGATTTCCACACCTATTCAATTCTTTGGAACCCACAGCGCATTGTCTTCTCTGTAGATGGCACTCCCATCAGAGAGTTCAAGAACCAAGAATCCAACGGTGTTCCGTTTCCAAAGAACCAACCAATGAGGATCTATTCAAGCCTATGGAATGCAGATGATTGGGCCACAAGGGGTGGGCTTATCAAAACAGATTGGAGCAGAGCTCCTTTCACTGCTTCCTACAGGAACTTCAATGCCAACAATGCTTGTGTTTCATCAAATGGAGCTTCTTCATGCAGCTCATCGTCATCTCAAAATTCTTCCTCTTCTGCATCAACTAGCAACGCATGGCTCTCAGAAGAGCTTGATTTAACAAGGCAGGAGAGGCTGAGATGGGTGCAGAAAAACTACATGATCTATAATTACTGCACTGACGCTAAGCGATTTCCCCAGGGCCTCCCTACAGAATGCAAGTCATAA

Protein Analysis

297

Amino Acids

32.99

Weight (kDa)

6.74

Isoelectric Point (pI)

39.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 341, 569
AcsI RAATTY 2 cut(s) 253, 727
AcuI CTGAAG 1 cut(s) 358
AgsI TTSAA 7 cut(s) 91, 194, 300, 450, 511, 570, 664
AjnI CCWGG 4 cut(s) 93, 247, 302, 861
AloI GAACNNNNNNTCC 2 cut(s) 506, 538
AluBI AGCT 9 cut(s) 60, 128, 151, 235, 241, 635, 698, 711, 775
AluI AGCT 9 cut(s) 60, 128, 151, 235, 241, 635, 698, 711, 775
Alw21I GWGCWC 1 cut(s) 637
Alw26I GTCTC 1 cut(s) 111
AlwI GGATC 2 cut(s) 341, 569
AoxI GGCC 2 cut(s) 594, 865
ApeKI GCWGC 3 cut(s) 53, 232, 708
ApoI RAATTY 2 cut(s) 253, 727
AspLEI GCGC 1 cut(s) 471
AspS9I GGNCC 2 cut(s) 594, 865
AsuHPI GGTGA 1 cut(s) 356
AsuNHI GCTAGC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 637
BbsI GAAGAC 2 cut(s) 364, 469
Bbv12I GWGCWC 1 cut(s) 637
BbvI GCAGC 3 cut(s) 40, 244, 720
BccI CCATC 3 cut(s) 482, 506, 798
BciT130I CCWGG 4 cut(s) 95, 249, 304, 863
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 2 cut(s) 57, 750
BfmI CTRYAG 3 cut(s) 483, 652, 873
BisI GCNGC 3 cut(s) 54, 233, 709
BlpI GCTNAGC 1 cut(s) 849
BlsI GCNGC 3 cut(s) 55, 234, 710
Bme1390I CCNGG 4 cut(s) 95, 249, 304, 863
BmgT120I GGNCC 2 cut(s) 594, 865
BmiI GGNNCC 1 cut(s) 461
BmrFI CCNGG 4 cut(s) 95, 249, 304, 863
BmsI GCATC 1 cut(s) 752
BmtI GCTAGC 1 cut(s) 60
BpiI GAAGAC 2 cut(s) 364, 469
BplI GAGNNNNNCTC 2 cut(s) 619, 651
Bpu1102I GCTNAGC 1 cut(s) 849
BpuEI CTTGAG 2 cut(s) 221, 358
BsaJI CCNNGG 5 cut(s) 247, 303, 379, 861, 862
BseBI CCWGG 4 cut(s) 95, 249, 304, 863
BseDI CCNNGG 5 cut(s) 247, 303, 379, 861, 862
BseGI GGATG 1 cut(s) 313
BseMII CTCAG 2 cut(s) 780, 791
BseXI GCAGC 3 cut(s) 40, 244, 720
BsgI GTGCAG 2 cut(s) 823, 830
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 2 cut(s) 596, 867
BsiEI CGRYCG 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 637
BslFI GGGAC 1 cut(s) 230
BsmAI GTCTC 1 cut(s) 111
BsmBI CGTCTC 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 230
BsmI GAATGC 2 cut(s) 586, 884
BsnI GGCC 2 cut(s) 596, 867
Bsp1286I GDGCHC 1 cut(s) 637
Bsp143I GATC 3 cut(s) 346, 561, 825
Bsp1720I GCTNAGC 1 cut(s) 849
BspANI GGCC 2 cut(s) 596, 867
BspCNI CTCAG 2 cut(s) 779, 792
BspLI GGNNCC 1 cut(s) 461
BspOI GCTAGC 1 cut(s) 60
BspPI GGATC 2 cut(s) 341, 569
BspQI GCTCTTC 2 cut(s) 51, 765
BssECI CCNNGG 5 cut(s) 247, 303, 379, 861, 862
BssMI GATC 3 cut(s) 346, 561, 825
BssT1I CCWWGG 1 cut(s) 379
Bst2UI CCWGG 4 cut(s) 95, 249, 304, 863
Bst4CI ACNGT 3 cut(s) 122, 268, 530
Bst6I CTCTTC 3 cut(s) 51, 742, 765
BstC8I GCNNGC 3 cut(s) 58, 149, 262
BstDEI CTNAG 4 cut(s) 129, 766, 800, 849
BstF5I GGATG 1 cut(s) 313
BstHHI GCGC 1 cut(s) 471
BstKTI GATC 3 cut(s) 349, 564, 828
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 3 cut(s) 346, 561, 825
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 4 cut(s) 50, 238, 674, 796
BstNI CCWGG 4 cut(s) 95, 249, 304, 863
BstSCI CCNGG 4 cut(s) 93, 247, 302, 861
BstSFI CTRYAG 3 cut(s) 483, 652, 873
BstV1I GCAGC 3 cut(s) 40, 244, 720
BstV2I GAAGAC 2 cut(s) 364, 469
BstX2I RGATCY 1 cut(s) 561
BstYI RGATCY 1 cut(s) 561
BsuRI GGCC 2 cut(s) 596, 867
BtsCI GGATG 1 cut(s) 313
BtsI GCAGTG 1 cut(s) 642
BtsIMutI CAGTG 3 cut(s) 264, 642, 840
Cac8I GCNNGC 3 cut(s) 58, 149, 262
CfoI GCGC 1 cut(s) 471
Cfr13I GGNCC 2 cut(s) 594, 865
CseI GACGC 1 cut(s) 854
CviAII CATG 4 cut(s) 111, 705, 759, 823
DdeI CTNAG 4 cut(s) 129, 766, 800, 849
DpnI GATC 3 cut(s) 348, 563, 827
DpnII GATC 3 cut(s) 346, 561, 825
Eam1104I CTCTTC 3 cut(s) 51, 742, 765
EarI CTCTTC 3 cut(s) 51, 742, 765
Ecl136II GAGCTC 1 cut(s) 635
Eco130I CCWWGG 1 cut(s) 379
Eco24I GRGCYC 1 cut(s) 637
Eco53kI GAGCTC 1 cut(s) 635
Eco57I CTGAAG 1 cut(s) 358
EcoICRI GAGCTC 1 cut(s) 635
EcoO109I RGGNCCY 1 cut(s) 865
EcoRII CCWGG 4 cut(s) 93, 247, 302, 861
EcoT14I CCWWGG 1 cut(s) 379
EcoT38I GRGCYC 1 cut(s) 637
ErhI CCWWGG 1 cut(s) 379
Esp3I CGTCTC 1 cut(s) 111
FaeI CATG 4 cut(s) 114, 708, 762, 826
FaiI YATR 9 cut(s) 32, 112, 230, 577, 706, 760, 824, 831, 889
FaqI GGGAC 1 cut(s) 230
FatI CATG 4 cut(s) 110, 704, 758, 822
Fnu4HI GCNGC 3 cut(s) 54, 233, 709
FokI GGATG 1 cut(s) 320
FriOI GRGCYC 1 cut(s) 637
Fsp4HI GCNGC 3 cut(s) 54, 233, 709
FspBI CTAG 2 cut(s) 57, 750
GlaI GCGC 1 cut(s) 470
GluI GCNGC 3 cut(s) 54, 233, 709
HaeIII GGCC 2 cut(s) 596, 867
HgaI GACGC 1 cut(s) 854
HhaI GCGC 1 cut(s) 471
Hin1II CATG 4 cut(s) 114, 708, 762, 826
Hin6I GCGC 1 cut(s) 469
HinP1I GCGC 1 cut(s) 469
HindIII AAGCTT 1 cut(s) 239
HinfI GANTC 2 cut(s) 133, 521
HphI GGTGA 1 cut(s) 356
Hpy188I TCNGA 3 cut(s) 105, 503, 769
Hpy188III TCNNGA 1 cut(s) 511
HpyCH4III ACNGT 3 cut(s) 122, 268, 530
HpyCH4V TGCA 7 cut(s) 232, 584, 708, 743, 811, 840, 882
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 238, 674, 796
HpyF3I CTNAG 4 cut(s) 129, 766, 800, 849
Hsp92II CATG 4 cut(s) 114, 708, 762, 826
HspAI GCGC 1 cut(s) 469
Kzo9I GATC 3 cut(s) 346, 561, 825
LguI GCTCTTC 2 cut(s) 51, 765
LmnI GCTCC 3 cut(s) 627, 640, 695
Lsp1109I GCAGC 3 cut(s) 40, 244, 720
LweI GCATC 1 cut(s) 752
MaeI CTAG 2 cut(s) 57, 750
MaeIII GTNAC 2 cut(s) 83, 268
MalI GATC 3 cut(s) 348, 563, 827
MboI GATC 3 cut(s) 346, 561, 825
MboII GAAGA 8 cut(s) 38, 350, 364, 469, 693, 723, 729, 782
MflI RGATCY 1 cut(s) 561
MhlI GDGCHC 1 cut(s) 637
MluCI AATT 5 cut(s) 253, 404, 450, 727, 832
MmeI TCCRAC 1 cut(s) 549
MnlI CCTC 8 cut(s) 20, 85, 187, 298, 552, 745, 789, 878
MseI TTAA 1 cut(s) 782
MslI CAYNNNNRTG 1 cut(s) 366
MspR9I CCNGG 4 cut(s) 95, 249, 304, 863
Mva1269I GAATGC 2 cut(s) 586, 884
MvaI CCWGG 4 cut(s) 95, 249, 304, 863
MwoI GCNNNNNNNGC 4 cut(s) 50, 238, 674, 796
NdeII GATC 3 cut(s) 346, 561, 825
NheI GCTAGC 1 cut(s) 56
NlaIII CATG 4 cut(s) 114, 708, 762, 826
NlaIV GGNNCC 1 cut(s) 461
NmuCI GTSAC 1 cut(s) 268
PasI CCCWGGG 1 cut(s) 862
PciSI GCTCTTC 2 cut(s) 51, 765
PctI GAATGC 2 cut(s) 586, 884
PfeI GAWTC 2 cut(s) 133, 521
PkrI GCNGC 3 cut(s) 55, 234, 710
Psp124BI GAGCTC 1 cut(s) 637
Psp6I CCWGG 4 cut(s) 93, 247, 302, 861
PspGI CCWGG 4 cut(s) 93, 247, 302, 861
PspN4I GGNNCC 1 cut(s) 461
PspPI GGNCC 2 cut(s) 594, 865
PsuI RGATCY 1 cut(s) 561
RseI CAYNNNNRTG 1 cut(s) 366
SacI GAGCTC 1 cut(s) 637
SapI GCTCTTC 2 cut(s) 51, 765
SaqAI TTAA 1 cut(s) 782
SatI GCNGC 3 cut(s) 54, 233, 709
Sau3AI GATC 3 cut(s) 346, 561, 825
Sau96I GGNCC 2 cut(s) 594, 865
ScrFI CCNGG 4 cut(s) 95, 249, 304, 863
SduI GDGCHC 1 cut(s) 637
SfaNI GCATC 1 cut(s) 752
SfcI CTRYAG 3 cut(s) 483, 652, 873
SmiMI CAYNNNNRTG 1 cut(s) 366
SmlI CTYRAG 2 cut(s) 236, 337
SmoI CTYRAG 2 cut(s) 236, 337
Sse9I AATT 5 cut(s) 253, 404, 450, 727, 832
SspMI CTAG 2 cut(s) 57, 750
SstI GAGCTC 1 cut(s) 637
StyD4I CCNGG 4 cut(s) 93, 247, 302, 861
StyI CCWWGG 1 cut(s) 379
TaaI ACNGT 3 cut(s) 122, 268, 530
TaqI TCGA 1 cut(s) 124
TasI AATT 5 cut(s) 253, 404, 450, 727, 832
TfiI GAWTC 2 cut(s) 133, 521
Tru1I TTAA 1 cut(s) 782
Tru9I TTAA 1 cut(s) 782
TscAI CASTG 3 cut(s) 271, 649, 847
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 3 cut(s) 53, 232, 708
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 4 cut(s) 15, 19, 675, 693
TspGWI ACGGA 1 cut(s) 525
TspRI CASTG 3 cut(s) 271, 649, 847
XapI RAATTY 2 cut(s) 253, 727
XspI CTAG 2 cut(s) 57, 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.