Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000460

Physical Location & Seq

Genomic Coordinates Reverse (-)

23307006 .. 23308680

Gene Structure 1675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G57560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCGATCACTTACTTGCTTCCTCTGTTTCTTTCTCTTATCATCACCTCCTCTGTTTCAGCTAATTTCCAAAGAGACGTTGAGATCACTTGGGGTGATGGTCGTGGACAGATCAAGAACAATGGAGAGCTTCTCACTTTATCTCTAGATAAATCCTCTGGTTCTGGATTCCAATCCAAAAACGAGTACTTGTTTGGTAAAGTCTCCATGCAAATGAAGCTTGTCCCTGGAAACTCCGCAGGAACAGTCACAACACTTTACTTGAAATCACCTGGAACAACATGGGACGAGATAGATTTCGAGTTTTTAGGGAATTCAAGTGGAGAACCTTACACACTTCACACAAATGTCTACACACAAGGCAAAGGAGACAAAGAACAACAATTCAAACTCTGGTTTGATCCAACAGCTAATTTCCACACTTACACTATTCTCTGGAACCCACAAAGAATCATTTTCACCGTCGATGGAACTCCGATCAGAGAATTCAAGAACATGGAGTCTCTAGGCACTCTGTTTCCCAAGAACAAACCAATGAGAATGTACTCGAGTCTTTGGAACGCTGATGATTGGGCAACGAGAGGTGGTTTGGTCAAAACCGATTGGTCTAAAGCTCCTTTCACTGCTTCTTACCGTGGCTTTCAACAAGAAGCTTGTGTTTGGTCAAACGGCAAGTCTTCTTGTCCTAATGCCTCGAAACAGGGGACTACTACTGGCTCGTGGTTGTCACAAGAGCTTGACTCAACAGCTCAACAAAGGATGAGATGGGTGCAGAGGAACTACATGATCTATAATTATTGTACGGATGCGAAGAGGTTCCCTCAAGGTCTTCCTAAAGAGTGCTTAGCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0008283 GO:0009266 GO:0009408 GO:0009409 GO:0009505 GO:0009605 GO:0009612 GO:0009628 GO:0009664 GO:0009719 GO:0009725 GO:0009733 GO:0009741 GO:0009827 GO:0009828 GO:0009832 GO:0009987 GO:0010033 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0030312 GO:0032870 GO:0033993 GO:0042221 GO:0042545 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046527 GO:0050896 GO:0051716 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Glyco_hydro_16 XET_C

Protein Analysis

284

Amino Acids

32.09

Weight (kDa)

8.76

Isoelectric Point (pI)

31.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_16	PF00722	24 - 204	2.1e-67	Glycosyl hydrolases family 16
XET_C	PF06955	237 - 281	1.2e-22	Xyloglucan endo-transglycosylase (XET) C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca	FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica	MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica	Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis	pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis	RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata	RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora	Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii	Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa	Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha	Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana	Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	351
AciI	CCGC	1 cut(s)	237
AclWI	GGATC	1 cut(s)	395
AcsI	RAATTY	2 cut(s)	313, 485
AfaI	GTAC	3 cut(s)	188, 545, 802
AgsI	TTSAA	5 cut(s)	265, 318, 388, 490, 644
AjnI	CCWGG	2 cut(s)	226, 271
AluBI	AGCT	9 cut(s)	62, 130, 220, 410, 614, 653, 736, 749, 848
AluI	AGCT	9 cut(s)	62, 130, 220, 410, 614, 653, 736, 749, 848
Alw26I	GTCTC	4 cut(s)	69, 208, 363, 507
AlwI	GGATC	1 cut(s)	395
Ama87I	CYCGRG	1 cut(s)	547
ApeKI	GCWGC	1 cut(s)	848
ApoI	RAATTY	2 cut(s)	313, 485
ArsI	GACNNNNNNTTYG	2 cut(s)	659, 691
Asp700I	GAANNNNTTC	1 cut(s)	815
AsuHPI	GGTGA	4 cut(s)	37, 107, 261, 451
AvaI	CYCGRG	1 cut(s)	547
BauI	CACGAG	1 cut(s)	718
BbsI	GAAGAC	2 cut(s)	669, 821
BbvI	GCAGC	1 cut(s)	835
BccI	CCATC	3 cut(s)	92, 461, 759
BceAI	ACGGC	1 cut(s)	685
BciT130I	CCWGG	2 cut(s)	228, 273
BcoDI	GTCTC	4 cut(s)	69, 208, 363, 507
BfaI	CTAG	2 cut(s)	146, 506
BisI	GCNGC	1 cut(s)	849
BlpI	GCTNAGC	1 cut(s)	844
BlsI	GCNGC	1 cut(s)	850
BmcAI	AGTACT	1 cut(s)	188
Bme1390I	CCNGG	2 cut(s)	228, 273
BmeT110I	CYCGRG	1 cut(s)	547
BmiI	GGNNCC	2 cut(s)	440, 818
BmrFI	CCNGG	2 cut(s)	228, 273
BmsI	GCATC	1 cut(s)	796
BpiI	GAAGAC	2 cut(s)	669, 821
BplI	GAGNNNNNCTC	6 cut(s)	117, 149, 725, 757, 805, 837
Bpu1102I	GCTNAGC	1 cut(s)	844
BpuEI	CTTGAG	1 cut(s)	807
BsaBI	GATNNNNATC	1 cut(s)	172
BsaJI	CCNNGG	2 cut(s)	226, 634
Bse1I	ACTGG	1 cut(s)	718
Bse8I	GATNNNNATC	1 cut(s)	172
BseBI	CCWGG	2 cut(s)	228, 273
BseDI	CCNNGG	2 cut(s)	226, 634
BseGI	GGATG	2 cut(s)	765, 811
BseJI	GATNNNNATC	1 cut(s)	172
BseNI	ACTGG	1 cut(s)	718
BseRI	GAGGAG	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	835
BsgI	GTGCAG	1 cut(s)	791
BsiHKCI	CYCGRG	1 cut(s)	547
BslFI	GGGAC	3 cut(s)	209, 299, 718
BsmAI	GTCTC	4 cut(s)	69, 208, 363, 507
BsmBI	CGTCTC	1 cut(s)	69
BsmFI	GGGAC	3 cut(s)	209, 299, 718
BsoBI	CYCGRG	1 cut(s)	547
Bsp143I	GATC	6 cut(s)	6, 84, 111, 400, 477, 786
Bsp1720I	GCTNAGC	1 cut(s)	844
BspACI	CCGC	1 cut(s)	237
BspLI	GGNNCC	2 cut(s)	440, 818
BspPI	GGATC	1 cut(s)	395
BsrI	ACTGG	1 cut(s)	718
BssECI	CCNNGG	2 cut(s)	226, 634
BssMI	GATC	6 cut(s)	6, 84, 111, 400, 477, 786
BssSI	CACGAG	1 cut(s)	718
Bst2BI	CACGAG	1 cut(s)	718
Bst2UI	CCWGG	2 cut(s)	228, 273
Bst4CI	ACNGT	3 cut(s)	247, 463, 635
Bst6I	CTCTTC	1 cut(s)	806
BstDEI	CTNAG	1 cut(s)	844
BstDSI	CCRYGG	1 cut(s)	634
BstF5I	GGATG	2 cut(s)	765, 811
BstKTI	GATC	6 cut(s)	9, 87, 114, 403, 480, 789
BstMAI	GTCTC	4 cut(s)	69, 208, 363, 507
BstMBI	GATC	6 cut(s)	6, 84, 111, 400, 477, 786
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNI	CCWGG	2 cut(s)	228, 273
BstSCI	CCNGG	2 cut(s)	226, 271
BstV1I	GCAGC	1 cut(s)	835
BstV2I	GAAGAC	2 cut(s)	669, 821
BtgI	CCRYGG	1 cut(s)	634
BtsCI	GGATG	2 cut(s)	765, 811
BtsI	GCAGTG	1 cut(s)	621
BtsIMutI	CAGTG	1 cut(s)	621
Csp6I	GTAC	3 cut(s)	187, 544, 801
CviAII	CATG	4 cut(s)	208, 282, 496, 784
CviQI	GTAC	3 cut(s)	187, 544, 801
DdeI	CTNAG	1 cut(s)	844
DpnI	GATC	6 cut(s)	8, 86, 113, 402, 479, 788
DpnII	GATC	6 cut(s)	6, 84, 111, 400, 477, 786
Eam1104I	CTCTTC	1 cut(s)	806
EarI	CTCTTC	1 cut(s)	806
Eco88I	CYCGRG	1 cut(s)	547
EcoRI	GAATTC	2 cut(s)	313, 485
EcoRII	CCWGG	2 cut(s)	226, 271
Esp3I	CGTCTC	1 cut(s)	69
FaeI	CATG	4 cut(s)	211, 285, 499, 787
FaiI	YATR	6 cut(s)	209, 283, 497, 785, 792, 853
FaqI	GGGAC	3 cut(s)	209, 299, 718
FatI	CATG	4 cut(s)	207, 281, 495, 783
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	1 cut(s)	849
FokI	GGATG	2 cut(s)	772, 818
Fsp4HI	GCNGC	1 cut(s)	849
FspBI	CTAG	2 cut(s)	146, 506
GluI	GCNGC	1 cut(s)	849
Hin1II	CATG	4 cut(s)	211, 285, 499, 787
HindIII	AAGCTT	2 cut(s)	218, 651
HinfI	GANTC	5 cut(s)	168, 450, 500, 550, 740
HphI	GGTGA	4 cut(s)	37, 107, 261, 451
Hpy166II	GTNNAC	2 cut(s)	107, 352
Hpy188I	TCNGA	2 cut(s)	477, 482
Hpy188III	TCNNGA	5 cut(s)	115, 146, 165, 436, 490
Hpy8I	GTNNAC	2 cut(s)	107, 352
Hpy99I	CGWCG	1 cut(s)	467
HpyCH4III	ACNGT	3 cut(s)	247, 463, 635
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	3 cut(s)	211, 772, 851
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	1 cut(s)	844
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	4 cut(s)	211, 285, 499, 787
Kzo9I	GATC	6 cut(s)	6, 84, 111, 400, 477, 786
LmnI	GCTCC	1 cut(s)	619
Lsp1109I	GCAGC	1 cut(s)	835
LweI	GCATC	1 cut(s)	796
MaeI	CTAG	2 cut(s)	146, 506
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	2 cut(s)	247, 726
MalI	GATC	6 cut(s)	8, 86, 113, 402, 479, 788
MboI	GATC	6 cut(s)	6, 84, 111, 400, 477, 786
MboII	GAAGA	3 cut(s)	669, 821, 823
MluCI	AATT	6 cut(s)	64, 313, 383, 412, 485, 793
MlyI	GAGTC	3 cut(s)	509, 559, 734
MmeI	TCCRAC	1 cut(s)	428
MnlI	CCTC	9 cut(s)	33, 58, 61, 166, 575, 703, 768, 807, 831
MroXI	GAANNNNTTC	1 cut(s)	815
MslI	CAYNNNNRTG	2 cut(s)	212, 345
MspR9I	CCNGG	2 cut(s)	228, 273
MvaI	CCWGG	2 cut(s)	228, 273
MwoI	GCNNNNNNNGC	1 cut(s)	217
NdeII	GATC	6 cut(s)	6, 84, 111, 400, 477, 786
NlaIII	CATG	4 cut(s)	211, 285, 499, 787
NlaIV	GGNNCC	2 cut(s)	440, 818
NmuCI	GTSAC	2 cut(s)	247, 726
PaeR7I	CTCGAG	1 cut(s)	547
PdmI	GAANNNNTTC	1 cut(s)	815
PfeI	GAWTC	2 cut(s)	168, 450
PkrI	GCNGC	1 cut(s)	850
PleI	GAGTC	3 cut(s)	508, 558, 734
PpsI	GAGTC	3 cut(s)	508, 558, 734
Psp6I	CCWGG	2 cut(s)	226, 271
PspGI	CCWGG	2 cut(s)	226, 271
PspN4I	GGNNCC	2 cut(s)	440, 818
PspXI	VCTCGAGB	1 cut(s)	547
RsaI	GTAC	3 cut(s)	188, 545, 802
RsaNI	GTAC	3 cut(s)	187, 544, 801
RseI	CAYNNNNRTG	2 cut(s)	212, 345
SatI	GCNGC	1 cut(s)	849
Sau3AI	GATC	6 cut(s)	6, 84, 111, 400, 477, 786
ScaI	AGTACT	1 cut(s)	188
SchI	GAGTC	3 cut(s)	509, 559, 734
ScrFI	CCNGG	2 cut(s)	228, 273
SfaNI	GCATC	1 cut(s)	796
Sfr274I	CTCGAG	1 cut(s)	547
SlaI	CTCGAG	1 cut(s)	547
SmiMI	CAYNNNNRTG	2 cut(s)	212, 345
SmlI	CTYRAG	2 cut(s)	547, 822
SmoI	CTYRAG	2 cut(s)	547, 822
Sse9I	AATT	6 cut(s)	64, 313, 383, 412, 485, 793
SsiI	CCGC	1 cut(s)	237
SspMI	CTAG	2 cut(s)	146, 506
StyD4I	CCNGG	2 cut(s)	226, 271
TaaI	ACNGT	3 cut(s)	247, 463, 635
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	4 cut(s)	300, 465, 548, 695
TasI	AATT	6 cut(s)	64, 313, 383, 412, 485, 793
TatI	WGTACW	2 cut(s)	186, 543
TfiI	GAWTC	2 cut(s)	168, 450
TscAI	CASTG	1 cut(s)	628
TseFI	GTSAC	2 cut(s)	247, 726
TseI	GCWGC	1 cut(s)	848
Tsp45I	GTSAC	2 cut(s)	247, 726
TspDTI	ATGAA	1 cut(s)	230
TspGWI	ACGGA	1 cut(s)	818
TspRI	CASTG	1 cut(s)	628
XapI	RAATTY	2 cut(s)	313, 485
XbaI	TCTAGA	1 cut(s)	145
XhoI	CTCGAG	1 cut(s)	547
XmiI	GTMKAC	1 cut(s)	351
XmnI	GAANNNNTTC	1 cut(s)	815
XspI	CTAG	2 cut(s)	146, 506
ZrmI	AGTACT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.