Rorug04G0040200

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
6234851 .. 6237398
2548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0040200.1

Sequence Viewer

Length: 777 bp
ATGAAATCTGATTTGCCTCTTGATTTGCAGTTTTCTAGTTGTCACCCAAGCATCAAGGTAAATGAAGGGGATGGTGCATTTTACAGACCAAAGATAGATACCAATGTATCTGATGCATTGAACATGAAGTTTCAGTGTGCAACATTACAGATTGATTTTCAGCTACCTGCTCGCTTTGAGCTGTATTACTCAGCAGAGGGTGAAGAAGGCAAGAAGGAGGCACCTGTTATGATACACATAGCCATTTTCGGTTCTGTTGAGCGTTCTCTAGCAATAACAGTGGCAAATCCAACTGATCTTGTAAAAGTTAGACTTCGAGCTGAGAAAAAATTGCCACCAGGCGCACCAAGGCGCTATTCTGGCACATTGAATGCATCTTCCACCATCTTGAGACAGGAAGGAGTTGGGGTTCTCTGGACTGGAATTGGACCTAACATTGCATGTAATGCTATGATTAATGCTGCTGAACTAGCTAGATATGATCAAGTGAAGCAGACACTTCTGAAAATTCTCGGGTTAAAGGCAATGTTGTCACTCATCTTTTTGCTGGTCTGGGGGTCAGTGTGGATTAAAGATGGGCAGATCTGGTACCTCTCCCTTGACAATAATGTAGGAAGAGTGATCCCAGTGAGTTTGGTTTACAGCTTTGGGACTCTATTGCTCGATATGCTCAGTGGCAAACATATTCCCCCAAGCTTCGAAATTGAGCTTTGGGACCCTTGTTCTTCTTCAAAAGGAAACTTCGTTGAAGCAAAAAGATATTATATCAGCTTTTGA

Protein Analysis

258

Amino Acids

28.66

Weight (kDa)

8.26

Isoelectric Point (pI)

40.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_2b PF00587 20 - 96 1.3e-09 tRNA synthetase class II core domain (G, H, P, S and T)
Mito_carr PF00153 81 - 169 9.1e-15 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 175
Acc65I GGTACC 1 cut(s) 588
AccB1I GGYRCC 2 cut(s) 220, 588
AclWI GGATC 1 cut(s) 616
AcsI RAATTY 1 cut(s) 507
AfaI GTAC 1 cut(s) 590
AgsI TTSAA 4 cut(s) 121, 370, 732, 749
AjnI CCWGG 1 cut(s) 337
AjuI GAANNNNNNNTTGG 2 cut(s) 340, 372
AloI GAACNNNNNNTCC 2 cut(s) 393, 425
AluBI AGCT 8 cut(s) 163, 181, 320, 473, 645, 696, 709, 771
AluI AGCT 8 cut(s) 163, 181, 320, 473, 645, 696, 709, 771
Alw26I GTCTC 1 cut(s) 385
AlwI GGATC 1 cut(s) 616
Ama87I CYCGRG 1 cut(s) 512
ApeKI GCWGC 1 cut(s) 461
ApoI RAATTY 1 cut(s) 507
AseI ATTAAT 1 cut(s) 456
Asp718I GGTACC 1 cut(s) 588
AspLEI GCGC 2 cut(s) 344, 354
AspS9I GGNCC 2 cut(s) 428, 715
AsuHPI GGTGA 2 cut(s) 35, 212
AsuII TTCGAA 1 cut(s) 699
AvaI CYCGRG 1 cut(s) 512
AvaII GGWCC 2 cut(s) 428, 715
BaeI ACNNNNGTAYC 4 cut(s) 90, 90, 123, 123
BanI GGYRCC 2 cut(s) 220, 588
BbvI GCAGC 1 cut(s) 448
BccI CCATC 3 cut(s) 65, 392, 569
BciT130I CCWGG 1 cut(s) 339
BclI TGATCA 1 cut(s) 481
BcoDI GTCTC 1 cut(s) 385
BfaI CTAG 4 cut(s) 36, 269, 470, 474
BfoI RGCGCY 1 cut(s) 355
BfuAI ACCTGC 1 cut(s) 175
BglII AGATCT 1 cut(s) 582
BisI GCNGC 1 cut(s) 462
BlsI GCNGC 1 cut(s) 463
Bme1390I CCNGG 1 cut(s) 339
Bme18I GGWCC 2 cut(s) 428, 715
BmeT110I CYCGRG 1 cut(s) 512
BmgT120I GGNCC 2 cut(s) 428, 715
BmiI GGNNCC 4 cut(s) 222, 590, 716, 717
BmrFI CCNGG 1 cut(s) 339
BmrI ACTGGG 1 cut(s) 620
BmsI GCATC 3 cut(s) 60, 103, 383
BmuI ACTGGG 1 cut(s) 620
Bpu14I TTCGAA 1 cut(s) 699
BpuEI CTTGAG 1 cut(s) 409
BsaJI CCNNGG 1 cut(s) 347
BsaXI ACNNNNNCTCC 2 cut(s) 393, 423
Bse1I ACTGG 2 cut(s) 424, 626
Bse3DI GCAATG 2 cut(s) 435, 531
BseBI CCWGG 1 cut(s) 339
BseDI CCNNGG 1 cut(s) 347
BseGI GGATG 1 cut(s) 76
BseMI GCAATG 2 cut(s) 435, 531
BseMII CTCAG 3 cut(s) 204, 312, 685
BseNI ACTGG 2 cut(s) 424, 626
BseXI GCAGC 1 cut(s) 448
BshNI GGYRCC 2 cut(s) 220, 588
BsiHKCI CYCGRG 1 cut(s) 512
BslFI GGGAC 2 cut(s) 664, 728
BsmAI GTCTC 1 cut(s) 385
BsmFI GGGAC 2 cut(s) 664, 728
BsmI GAATGC 1 cut(s) 376
BsoBI CYCGRG 1 cut(s) 512
Bsp119I TTCGAA 1 cut(s) 699
Bsp143I GATC 4 cut(s) 295, 481, 582, 621
BspCNI CTCAG 3 cut(s) 203, 313, 684
BspLI GGNNCC 4 cut(s) 222, 590, 716, 717
BspMI ACCTGC 1 cut(s) 175
BspPI GGATC 1 cut(s) 616
BspT104I TTCGAA 1 cut(s) 699
BspT107I GGYRCC 2 cut(s) 220, 588
BsrDI GCAATG 2 cut(s) 435, 531
BsrI ACTGG 2 cut(s) 424, 626
BssECI CCNNGG 1 cut(s) 347
BssMI GATC 4 cut(s) 295, 481, 582, 621
BssT1I CCWWGG 1 cut(s) 347
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 1 cut(s) 280
Bst6I CTCTTC 1 cut(s) 610
BstAPI GCANNNNNTGC 1 cut(s) 446
BstBI TTCGAA 1 cut(s) 699
BstC8I GCNNGC 1 cut(s) 172
BstDEI CTNAG 3 cut(s) 190, 321, 671
BstF5I GGATG 1 cut(s) 76
BstH2I RGCGCY 1 cut(s) 355
BstHHI GCGC 2 cut(s) 344, 354
BstKTI GATC 4 cut(s) 298, 484, 585, 624
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 4 cut(s) 295, 481, 582, 621
BstMWI GCNNNNNNNGC 4 cut(s) 360, 446, 470, 667
BstNI CCWGG 1 cut(s) 339
BstNSI RCATGY 1 cut(s) 444
BstSCI CCNGG 1 cut(s) 337
BstV1I GCAGC 1 cut(s) 448
BstX2I RGATCY 1 cut(s) 582
BstYI RGATCY 1 cut(s) 582
BtsCI GGATG 1 cut(s) 76
BtsIMutI CAGTG 5 cut(s) 140, 285, 567, 633, 679
BveI ACCTGC 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 172
CfoI GCGC 2 cut(s) 344, 354
Cfr13I GGNCC 2 cut(s) 428, 715
Csp6I GTAC 1 cut(s) 589
CspCI CAANNNNNGTGG 2 cut(s) 261, 296
CviAII CATG 2 cut(s) 124, 441
CviJI RGCY 9 cut(s) 163, 181, 242, 320, 473, 645, 696, 709, 771
CviKI_1 RGCY 9 cut(s) 163, 181, 242, 320, 473, 645, 696, 709, 771
CviQI GTAC 1 cut(s) 589
DdeI CTNAG 3 cut(s) 190, 321, 671
DpnI GATC 4 cut(s) 297, 483, 584, 623
DpnII GATC 4 cut(s) 295, 481, 582, 621
Eam1104I CTCTTC 1 cut(s) 610
EarI CTCTTC 1 cut(s) 610
Eco130I CCWWGG 1 cut(s) 347
Eco47I GGWCC 2 cut(s) 428, 715
Eco88I CYCGRG 1 cut(s) 512
EcoO109I RGGNCCY 1 cut(s) 715
EcoRII CCWGG 1 cut(s) 337
EcoT14I CCWWGG 1 cut(s) 347
EcoT22I ATGCAT 2 cut(s) 118, 376
ErhI CCWWGG 1 cut(s) 347
FaeI CATG 2 cut(s) 127, 444
FaiI YATR 9 cut(s) 125, 230, 239, 442, 452, 480, 668, 684, 765
FalI AAGNNNNNCTT 2 cut(s) 297, 329
FaqI GGGAC 2 cut(s) 664, 728
FatI CATG 2 cut(s) 123, 440
FbaI TGATCA 1 cut(s) 481
Fnu4HI GCNGC 1 cut(s) 462
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 462
FspBI CTAG 4 cut(s) 36, 269, 470, 474
GlaI GCGC 2 cut(s) 343, 353
GluI GCNGC 1 cut(s) 462
HaeII RGCGCY 1 cut(s) 355
HhaI GCGC 2 cut(s) 344, 354
Hin1II CATG 2 cut(s) 127, 444
Hin6I GCGC 2 cut(s) 342, 352
HinP1I GCGC 2 cut(s) 342, 352
HindIII AAGCTT 1 cut(s) 694
HinfI GANTC 1 cut(s) 652
HphI GGTGA 2 cut(s) 35, 212
Hpy166II GTNNAC 1 cut(s) 640
Hpy188I TCNGA 3 cut(s) 10, 112, 504
Hpy188III TCNNGA 3 cut(s) 20, 388, 415
Hpy8I GTNNAC 1 cut(s) 640
HpyAV CCTTC 4 cut(s) 59, 200, 208, 392
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4V TGCA 6 cut(s) 28, 77, 116, 140, 374, 440
HpyF10VI GCNNNNNNNGC 4 cut(s) 360, 446, 470, 667
HpyF3I CTNAG 3 cut(s) 190, 321, 671
Hsp92II CATG 2 cut(s) 127, 444
HspAI GCGC 2 cut(s) 342, 352
KflI GGGWCCC 1 cut(s) 715
KpnI GGTACC 1 cut(s) 592
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 4 cut(s) 295, 481, 582, 621
Lsp1109I GCAGC 1 cut(s) 448
LweI GCATC 3 cut(s) 60, 103, 383
MaeI CTAG 4 cut(s) 36, 269, 470, 474
MaeIII GTNAC 2 cut(s) 41, 531
MalI GATC 4 cut(s) 297, 483, 584, 623
MboI GATC 4 cut(s) 295, 481, 582, 621
MboII GAAGA 5 cut(s) 215, 369, 627, 717, 720
MflI RGATCY 1 cut(s) 582
MluCI AATT 4 cut(s) 329, 423, 507, 702
MlyI GAGTC 1 cut(s) 646
MmeI TCCRAC 1 cut(s) 314
MnlI CCTC 4 cut(s) 27, 190, 211, 602
Mph1103I ATGCAT 2 cut(s) 118, 376
MseI TTAA 3 cut(s) 456, 518, 570
MspR9I CCNGG 1 cut(s) 339
Mva1269I GAATGC 1 cut(s) 376
MvaI CCWGG 1 cut(s) 339
MwoI GCNNNNNNNGC 4 cut(s) 360, 446, 470, 667
NdeII GATC 4 cut(s) 295, 481, 582, 621
NlaIII CATG 2 cut(s) 127, 444
NlaIV GGNNCC 4 cut(s) 222, 590, 716, 717
NmuCI GTSAC 2 cut(s) 41, 531
NsiI ATGCAT 2 cut(s) 118, 376
NspI RCATGY 1 cut(s) 444
NspV TTCGAA 1 cut(s) 699
PctI GAATGC 1 cut(s) 376
PkrI GCNGC 1 cut(s) 463
PleI GAGTC 1 cut(s) 646
PpsI GAGTC 1 cut(s) 646
PpuMI RGGWCCY 1 cut(s) 715
PshBI ATTAAT 1 cut(s) 456
Psp5II RGGWCCY 1 cut(s) 715
Psp6I CCWGG 1 cut(s) 337
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 4 cut(s) 222, 590, 716, 717
PspPI GGNCC 2 cut(s) 428, 715
PspPPI RGGWCCY 1 cut(s) 715
PsuI RGATCY 1 cut(s) 582
RsaI GTAC 1 cut(s) 590
RsaNI GTAC 1 cut(s) 589
SaqAI TTAA 3 cut(s) 456, 518, 570
SatI GCNGC 1 cut(s) 462
Sau3AI GATC 4 cut(s) 295, 481, 582, 621
Sau96I GGNCC 2 cut(s) 428, 715
SchI GAGTC 1 cut(s) 646
ScrFI CCNGG 1 cut(s) 339
SfaNI GCATC 3 cut(s) 60, 103, 383
SfuI TTCGAA 1 cut(s) 699
SinI GGWCC 2 cut(s) 428, 715
SmlI CTYRAG 1 cut(s) 388
SmoI CTYRAG 1 cut(s) 388
Sse9I AATT 4 cut(s) 329, 423, 507, 702
SspMI CTAG 4 cut(s) 36, 269, 470, 474
StyD4I CCNGG 1 cut(s) 337
StyI CCWWGG 1 cut(s) 347
TaaI ACNGT 1 cut(s) 280
TaqI TCGA 3 cut(s) 316, 663, 699
TasI AATT 4 cut(s) 329, 423, 507, 702
Tru1I TTAA 3 cut(s) 456, 518, 570
Tru9I TTAA 3 cut(s) 456, 518, 570
TscAI CASTG 5 cut(s) 140, 285, 567, 633, 679
TseFI GTSAC 2 cut(s) 41, 531
TseI GCWGC 1 cut(s) 461
Tsp45I GTSAC 2 cut(s) 41, 531
TspDTI ATGAA 3 cut(s) 17, 78, 140
TspRI CASTG 5 cut(s) 140, 285, 567, 633, 679
VpaK11BI GGWCC 2 cut(s) 428, 715
VspI ATTAAT 1 cut(s) 456
XapI RAATTY 1 cut(s) 507
XceI RCATGY 1 cut(s) 444
XspI CTAG 4 cut(s) 36, 269, 470, 474
Zsp2I ATGCAT 2 cut(s) 118, 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.