Rorug04G0009900

Xyloglucan endo-transglycosylase (XET) C-terminus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000460
Physical Location & Seq
Forward (+)
1609474 .. 1610040
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0009900.1

Sequence Viewer

Length: 468 bp
ATGAAGACTTTAAACTCCTCGAGATCCAGACTTATGTGTAAGCAGGAAGTAAAGAAACTGCTTCAGAGAATTGAAGGTGTTTACCAAGTCAGCATAGATGCTGATCAGCAGAAAGTCACAGTTTCAGGGGTTATAGACTCTGCCACTTCGATCAAGAAATTGGTTAGAGCTGGGAAACATGCTGAGCTTTGGGCCTTGAAGCCTTCAAAAACCAGCAGCAGCAGGTGTTCCCCAATTTCCTTACTGAAGAGGATATTGATCGATGACTTCTCGGACGACAATGAGGAGGAGGATGAAGAGGATGAGTTGAGGTTTCTGAGGCAGATAGTGAACCAGCTCAGGCAACAAGCGATCGATGCAAACAACATTGCAAAGAAAGGTGTTGCGGCTGCAGCTAATCCCAACAATAGTGTCAAGATCACATACAATCACAATGCTGGGAAGAAGAGAGTGCAGCACCCAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Glyco_hydro_16 XET_C

Protein Analysis

155

Amino Acids

17.38

Weight (kDa)

9.52

Isoelectric Point (pI)

50.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 13 - 57 1.4e-09 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 213
Acc36I ACCTGC 1 cut(s) 213
AciI CCGC 1 cut(s) 386
AclWI GGATC 1 cut(s) 18
AcuI CTGAAG 2 cut(s) 47, 266
AgsI TTSAA 3 cut(s) 74, 199, 207
AluBI AGCT 4 cut(s) 170, 187, 337, 395
AluI AGCT 4 cut(s) 170, 187, 337, 395
AlwI GGATC 1 cut(s) 18
Ama87I CYCGRG 1 cut(s) 19
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 5 cut(s) 216, 219, 389, 392, 454
AspS9I GGNCC 1 cut(s) 192
AvaI CYCGRG 1 cut(s) 19
BbsI GAAGAC 1 cut(s) 11
BbvI GCAGC 4 cut(s) 228, 231, 376, 404
BclI TGATCA 1 cut(s) 103
BfmI CTRYAG 1 cut(s) 390
BfuAI ACCTGC 1 cut(s) 213
BisI GCNGC 6 cut(s) 217, 220, 387, 390, 393, 455
BlpI GCTNAGC 1 cut(s) 183
BlsI GCNGC 6 cut(s) 218, 221, 388, 391, 394, 456
BmeT110I CYCGRG 1 cut(s) 19
BmgT120I GGNCC 1 cut(s) 192
BmsI GCATC 2 cut(s) 88, 346
BpiI GAAGAC 1 cut(s) 11
Bpu10I CCTNAGC 1 cut(s) 338
Bpu1102I GCTNAGC 1 cut(s) 183
Bsa29I ATCGAT 2 cut(s) 261, 354
BsaBI GATNNNNATC 2 cut(s) 102, 257
Bse3DI GCAATG 1 cut(s) 366
Bse8I GATNNNNATC 2 cut(s) 102, 257
BseCI ATCGAT 2 cut(s) 261, 354
BseGI GGATG 2 cut(s) 298, 307
BseJI GATNNNNATC 2 cut(s) 102, 257
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 3 cut(s) 174, 308, 352
BseRI GAGGAG 3 cut(s) 7, 299, 302
BseXI GCAGC 4 cut(s) 228, 231, 376, 404
BseYI CCCAGC 2 cut(s) 170, 437
Bsh1285I CGRYCG 1 cut(s) 354
BshFI GGCC 1 cut(s) 194
BshVI ATCGAT 2 cut(s) 261, 354
BsiEI CGRYCG 1 cut(s) 354
BsiHKCI CYCGRG 1 cut(s) 19
BsnI GGCC 1 cut(s) 194
BsoBI CYCGRG 1 cut(s) 19
Bsp143I GATC 6 cut(s) 23, 103, 150, 258, 351, 417
Bsp1720I GCTNAGC 1 cut(s) 183
BspACI CCGC 1 cut(s) 386
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 3 cut(s) 175, 309, 351
BspDI ATCGAT 2 cut(s) 261, 354
BspMAI CTGCAG 1 cut(s) 394
BspMI ACCTGC 1 cut(s) 213
BspPI GGATC 1 cut(s) 18
BsrDI GCAATG 1 cut(s) 366
BssMI GATC 6 cut(s) 23, 103, 150, 258, 351, 417
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 3 cut(s) 242, 291, 440
BstDEI CTNAG 3 cut(s) 183, 317, 338
BstF5I GGATG 2 cut(s) 298, 307
BstKTI GATC 6 cut(s) 26, 106, 153, 261, 354, 420
BstMBI GATC 6 cut(s) 23, 103, 150, 258, 351, 417
BstMCI CGRYCG 1 cut(s) 354
BstMWI GCNNNNNNNGC 2 cut(s) 356, 392
BstNSI RCATGY 1 cut(s) 182
BstSFI CTRYAG 1 cut(s) 390
BstV1I GCAGC 4 cut(s) 228, 231, 376, 404
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 23
BstYI RGATCY 1 cut(s) 23
Bsu15I ATCGAT 2 cut(s) 261, 354
BsuRI GGCC 1 cut(s) 194
BsuTUI ATCGAT 2 cut(s) 261, 354
BtsCI GGATG 2 cut(s) 298, 307
BveI ACCTGC 1 cut(s) 213
Cfr13I GGNCC 1 cut(s) 192
ClaI ATCGAT 2 cut(s) 261, 354
CviAII CATG 1 cut(s) 179
CviJI RGCY 7 cut(s) 170, 187, 194, 202, 337, 389, 395
CviKI_1 RGCY 7 cut(s) 170, 187, 194, 202, 337, 389, 395
DdeI CTNAG 3 cut(s) 183, 317, 338
DpnI GATC 6 cut(s) 25, 105, 152, 260, 353, 419
DpnII GATC 6 cut(s) 23, 103, 150, 258, 351, 417
DraI TTTAAA 1 cut(s) 12
Eam1104I CTCTTC 3 cut(s) 242, 291, 440
EarI CTCTTC 3 cut(s) 242, 291, 440
Eco57I CTGAAG 2 cut(s) 47, 266
Eco88I CYCGRG 1 cut(s) 19
FaeI CATG 1 cut(s) 182
FaiI YATR 5 cut(s) 35, 95, 134, 180, 424
FatI CATG 1 cut(s) 178
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 6 cut(s) 217, 220, 387, 390, 393, 455
FokI GGATG 2 cut(s) 305, 314
Fsp4HI GCNGC 6 cut(s) 217, 220, 387, 390, 393, 455
GluI GCNGC 6 cut(s) 217, 220, 387, 390, 393, 455
GsaI CCCAGC 2 cut(s) 174, 441
HaeIII GGCC 1 cut(s) 194
Hin1II CATG 1 cut(s) 182
HinfI GANTC 1 cut(s) 137
Hpy166II GTNNAC 2 cut(s) 82, 331
Hpy188I TCNGA 3 cut(s) 66, 274, 318
Hpy188III TCNNGA 4 cut(s) 21, 27, 154, 415
Hpy8I GTNNAC 2 cut(s) 82, 331
HpyAV CCTTC 2 cut(s) 68, 213
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4V TGCA 4 cut(s) 359, 371, 392, 454
HpyF10VI GCNNNNNNNGC 2 cut(s) 356, 392
HpyF3I CTNAG 3 cut(s) 183, 317, 338
Hsp92II CATG 1 cut(s) 182
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 6 cut(s) 23, 103, 150, 258, 351, 417
LpnPI CCDG 9 cut(s) 29, 40, 111, 156, 208, 226, 325, 347, 423
Lsp1109I GCAGC 4 cut(s) 228, 231, 376, 404
LweI GCATC 2 cut(s) 88, 346
MaeIII GTNAC 1 cut(s) 115
MalI GATC 6 cut(s) 25, 105, 152, 260, 353, 419
MboI GATC 6 cut(s) 23, 103, 150, 258, 351, 417
MboII GAAGA 5 cut(s) 16, 259, 308, 454, 457
MflI RGATCY 1 cut(s) 23
MluCI AATT 4 cut(s) 69, 158, 234, 463
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 8 cut(s) 28, 243, 277, 280, 283, 292, 303, 312
MseI TTAA 1 cut(s) 11
MwoI GCNNNNNNNGC 2 cut(s) 356, 392
NdeII GATC 6 cut(s) 23, 103, 150, 258, 351, 417
NlaIII CATG 1 cut(s) 182
NmuCI GTSAC 1 cut(s) 115
NspI RCATGY 1 cut(s) 182
PaeR7I CTCGAG 1 cut(s) 19
PaqCI CACCTGC 1 cut(s) 213
PkrI GCNGC 6 cut(s) 218, 221, 388, 391, 394, 456
Ple19I CGATCG 1 cut(s) 354
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PspFI CCCAGC 2 cut(s) 170, 437
PspPI GGNCC 1 cut(s) 192
PstI CTGCAG 1 cut(s) 394
PsuI RGATCY 1 cut(s) 23
PvuI CGATCG 1 cut(s) 354
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 6 cut(s) 217, 220, 387, 390, 393, 455
Sau3AI GATC 6 cut(s) 23, 103, 150, 258, 351, 417
Sau96I GGNCC 1 cut(s) 192
SchI GAGTC 1 cut(s) 131
SetI ASST 8 cut(s) 79, 172, 189, 227, 314, 339, 382, 397
SfaNI GCATC 2 cut(s) 88, 346
SfcI CTRYAG 1 cut(s) 390
Sfr274I CTCGAG 1 cut(s) 19
SlaI CTCGAG 1 cut(s) 19
SmlI CTYRAG 1 cut(s) 19
SmoI CTYRAG 1 cut(s) 19
Sse9I AATT 4 cut(s) 69, 158, 234, 463
SsiI CCGC 1 cut(s) 386
TaaI ACNGT 1 cut(s) 121
TaqI TCGA 4 cut(s) 20, 149, 261, 354
TasI AATT 4 cut(s) 69, 158, 234, 463
TauI GCSGC 1 cut(s) 389
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 5 cut(s) 216, 219, 389, 392, 454
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 2 cut(s) 17, 309
XceI RCATGY 1 cut(s) 182
XhoI CTCGAG 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.