Prupe.1G089000_v2.0.a1

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000460
Physical Location & Seq
Forward (+)
6652205 .. 6653996
1792 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G089000.1

Sequence Viewer

Length: 900 bp
ATGGCTTCTTCTTCTCCACCATCAAAATACTTCTCCCTTGTGGTTTTGGTGCTTTGTTTTATTGTTGGCTCTTTGGTGGCTGTTGCCTCTGCTAGTAATTTCAATCAAGATTTTGAGATTACATGGGGTGATGGCAGAGGTAAGATTTTAAACAACAACGAGCTTCTAATGCTGTCTCTTGATAAAGGCTCAGGTTCAGGATTTCAATCCACAAATGAGTATCTGTTTGGCAAGATTGATATGCAGCTTAAGCTTGTCCCTGGAAACTCTGCTGGCACTGTCACTGCCTACTATTTGGCCTCAGAAGGATTAACATGGGATGAGATTGATTTTGAGTTCTTGGGGAACCTAAGTGGTGATCCTTACATCCTTCACACCAATGTGTATAGCCAAGGCAAGGGCAACAGAGAGCAACAGTTCTACCTCTGGTTTGACCCAACTGCTGATTTCCACACATATTCAATCCTTTGGAACCCTCAACGCATTGTCTTCTCAGTGGATGGTACCCCAATAAGGGAGTTCAAGAACTTGGAGTCAATTGGTGTTCCATTTCCCAAGAACCAGCCAATGAGATTATACTCCAGCCTTTGGAATGCAGATGATTGGGCTACTAGGGGTGGTCTGGTTAAGACAGACTGGACCAAAGCTCCTTTCACCGCCTCCTACAGGAACTTCAATGCCATTAATGCCTGCGTATGGTCCTCTGGGGCATCTTCTTGCACTTCAAAGTCTCCATCTTCAACTAGCTCAGCTGGCAATACATGGCTTTCGCAAGAGTTTGATTTGGCAAGTCAGGAGAAACTGAAATCGGTGCAAAGAAACTACATGATTTACAATTACTGCAAAGACACCAAGAGATTTCCCCAAGGCTTTCCTCAAGAATGCGCACTACTGTCTTGA

Protein Analysis

300

Amino Acids

33.37

Weight (kDa)

5.49

Isoelectric Point (pI)

35.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 886
Acc65I GGTACC 1 cut(s) 503
AccB1I GGYRCC 1 cut(s) 503
AccB7I CCANNNNNTGG 1 cut(s) 588
AciI CCGC 1 cut(s) 657
AclWI GGATC 1 cut(s) 353
AfaI GTAC 1 cut(s) 505
AfiI CCNNNNNNNGG 6 cut(s) 397, 513, 514, 588, 666, 696
AflII CTTAAG 1 cut(s) 248
AgsI TTSAA 7 cut(s) 103, 206, 462, 523, 676, 726, 741
AjnI CCWGG 1 cut(s) 259
AjuI GAANNNNNNNTTGG 2 cut(s) 635, 667
AleI CACNNNNGTG 1 cut(s) 380
AluBI AGCT 6 cut(s) 163, 247, 253, 647, 747, 752
AluI AGCT 6 cut(s) 163, 247, 253, 647, 747, 752
Alw26I GTCTC 2 cut(s) 180, 735
AlwI GGATC 1 cut(s) 353
AoxI GGCC 1 cut(s) 297
ApeKI GCWGC 1 cut(s) 244
AseI ATTAAT 1 cut(s) 684
Asp718I GGTACC 1 cut(s) 503
AspLEI GCGC 1 cut(s) 887
AspS9I GGNCC 2 cut(s) 639, 699
AsuHPI GGTGA 3 cut(s) 140, 368, 646
AvaII GGWCC 2 cut(s) 639, 699
BanI GGYRCC 1 cut(s) 503
BbsI GAAGAC 1 cut(s) 481
BbvI GCAGC 1 cut(s) 256
BccI CCATC 4 cut(s) 28, 125, 494, 742
BciT130I CCWGG 1 cut(s) 261
BcoDI GTCTC 2 cut(s) 180, 735
BfaI CTAG 3 cut(s) 93, 612, 744
BfmI CTRYAG 1 cut(s) 664
BfrI CTTAAG 1 cut(s) 248
BisI GCNGC 1 cut(s) 245
BlpI GCTNAGC 1 cut(s) 748
BlsI GCNGC 1 cut(s) 246
Bme1390I CCNGG 1 cut(s) 261
Bme18I GGWCC 2 cut(s) 639, 699
BmgT120I GGNCC 2 cut(s) 639, 699
BmiI GGNNCC 3 cut(s) 347, 473, 505
BmrFI CCNGG 1 cut(s) 261
BmsI GCATC 1 cut(s) 719
BpiI GAAGAC 1 cut(s) 481
BpmI CTGGAG 1 cut(s) 565
Bpu10I CCTNAGC 1 cut(s) 190
Bpu1102I GCTNAGC 1 cut(s) 748
BpuEI CTTGAG 1 cut(s) 861
BsaBI GATNNNNATC 1 cut(s) 205
BsaJI CCNNGG 3 cut(s) 259, 391, 865
BsaXI ACNNNNNCTCC 2 cut(s) 631, 661
Bsc4I CCNNNNNNNGG 6 cut(s) 397, 513, 514, 588, 666, 696
Bse1I ACTGG 1 cut(s) 641
Bse8I GATNNNNATC 1 cut(s) 205
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 3 cut(s) 259, 391, 865
BseGI GGATG 3 cut(s) 325, 366, 505
BseJI GATNNNNATC 1 cut(s) 205
BseLI CCNNNNNNNGG 6 cut(s) 397, 513, 514, 588, 666, 696
BseMII CTCAG 4 cut(s) 204, 315, 507, 762
BseNI ACTGG 1 cut(s) 641
BseXI GCAGC 1 cut(s) 256
BshFI GGCC 1 cut(s) 299
BshNI GGYRCC 1 cut(s) 503
BslFI GGGAC 1 cut(s) 242
BslI CCNNNNNNNGG 6 cut(s) 397, 513, 514, 588, 666, 696
BsmAI GTCTC 2 cut(s) 180, 735
BsmFI GGGAC 1 cut(s) 242
BsmI GAATGC 2 cut(s) 598, 887
BsnI GGCC 1 cut(s) 299
Bsp143I GATC 1 cut(s) 358
Bsp1720I GCTNAGC 1 cut(s) 748
BspACI CCGC 1 cut(s) 657
BspANI GGCC 1 cut(s) 299
BspCNI CTCAG 4 cut(s) 203, 314, 506, 761
BspLI GGNNCC 3 cut(s) 347, 473, 505
BspPI GGATC 1 cut(s) 353
BspT107I GGYRCC 1 cut(s) 503
BspTI CTTAAG 1 cut(s) 248
BsrI ACTGG 1 cut(s) 641
BssECI CCNNGG 3 cut(s) 259, 391, 865
BssMI GATC 1 cut(s) 358
BssT1I CCWWGG 2 cut(s) 391, 865
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 3 cut(s) 280, 417, 894
BstAFI CTTAAG 1 cut(s) 248
BstC8I GCNNGC 3 cut(s) 274, 691, 754
BstDEI CTNAG 5 cut(s) 190, 301, 350, 493, 748
BstENI CCTNNNNNAGG 1 cut(s) 664
BstF5I GGATG 3 cut(s) 325, 366, 505
BstHHI GCGC 1 cut(s) 887
BstKTI GATC 1 cut(s) 361
BstMAI GTCTC 2 cut(s) 180, 735
BstMBI GATC 1 cut(s) 358
BstMWI GCNNNNNNNGC 4 cut(s) 169, 250, 686, 753
BstNI CCWGG 1 cut(s) 261
BstSCI CCNGG 1 cut(s) 259
BstSFI CTRYAG 1 cut(s) 664
BstV1I GCAGC 1 cut(s) 256
BstV2I GAAGAC 1 cut(s) 481
BsuRI GGCC 1 cut(s) 299
BtsCI GGATG 3 cut(s) 325, 366, 505
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 3 cut(s) 276, 282, 501
Cac8I GCNNGC 3 cut(s) 274, 691, 754
CfoI GCGC 1 cut(s) 887
Cfr13I GGNCC 2 cut(s) 639, 699
Csp6I GTAC 1 cut(s) 504
CviAII CATG 4 cut(s) 123, 315, 762, 826
CviQI GTAC 1 cut(s) 504
DdeI CTNAG 5 cut(s) 190, 301, 350, 493, 748
DpnI GATC 1 cut(s) 360
DpnII GATC 1 cut(s) 358
DraI TTTAAA 1 cut(s) 150
Eco130I CCWWGG 2 cut(s) 391, 865
Eco47I GGWCC 2 cut(s) 639, 699
EcoNI CCTNNNNNAGG 1 cut(s) 664
EcoRII CCWGG 1 cut(s) 259
EcoT14I CCWWGG 2 cut(s) 391, 865
ErhI CCWWGG 2 cut(s) 391, 865
FaeI CATG 4 cut(s) 126, 318, 765, 829
FaiI YATR 9 cut(s) 124, 242, 316, 387, 457, 577, 697, 763, 827
FaqI GGGAC 1 cut(s) 242
FatI CATG 4 cut(s) 122, 314, 761, 825
Fnu4HI GCNGC 1 cut(s) 245
FokI GGATG 3 cut(s) 332, 353, 512
Fsp4HI GCNGC 1 cut(s) 245
FspAI RTGCGCAY 1 cut(s) 886
FspBI CTAG 3 cut(s) 93, 612, 744
FspI TGCGCA 1 cut(s) 886
GlaI GCGC 1 cut(s) 886
GluI GCNGC 1 cut(s) 245
GsuI CTGGAG 1 cut(s) 565
HaeIII GGCC 1 cut(s) 299
HhaI GCGC 1 cut(s) 887
Hin1II CATG 4 cut(s) 126, 318, 765, 829
Hin6I GCGC 1 cut(s) 885
HinP1I GCGC 1 cut(s) 885
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 1 cut(s) 533
HphI GGTGA 3 cut(s) 140, 368, 646
Hpy188I TCNGA 1 cut(s) 304
Hpy188III TCNNGA 7 cut(s) 107, 179, 198, 523, 794, 878, 897
HpyAV CCTTC 2 cut(s) 299, 380
HpyCH4III ACNGT 3 cut(s) 280, 417, 894
HpyCH4V TGCA 5 cut(s) 244, 596, 720, 814, 843
HpyF10VI GCNNNNNNNGC 4 cut(s) 169, 250, 686, 753
HpyF3I CTNAG 5 cut(s) 190, 301, 350, 493, 748
Hsp92II CATG 4 cut(s) 126, 318, 765, 829
HspAI GCGC 1 cut(s) 885
KpnI GGTACC 1 cut(s) 507
Kzo9I GATC 1 cut(s) 358
LmnI GCTCC 1 cut(s) 652
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 1 cut(s) 719
MaeI CTAG 3 cut(s) 93, 612, 744
MaeIII GTNAC 1 cut(s) 280
MalI GATC 1 cut(s) 360
MboI GATC 1 cut(s) 358
MboII GAAGA 4 cut(s) 3, 481, 705, 729
MfeI CAATTG 1 cut(s) 537
MluCI AATT 3 cut(s) 97, 537, 835
MlyI GAGTC 1 cut(s) 542
MnlI CCTC 8 cut(s) 97, 131, 310, 434, 486, 670, 712, 885
MseI TTAA 5 cut(s) 149, 249, 311, 627, 684
MslI CAYNNNNRTG 2 cut(s) 378, 380
MspA1I CMGCKG 1 cut(s) 752
MspCI CTTAAG 1 cut(s) 248
MspR9I CCNGG 1 cut(s) 261
MunI CAATTG 1 cut(s) 537
Mva1269I GAATGC 2 cut(s) 598, 887
MvaI CCWGG 1 cut(s) 261
MwoI GCNNNNNNNGC 4 cut(s) 169, 250, 686, 753
NdeII GATC 1 cut(s) 358
NlaIII CATG 4 cut(s) 126, 318, 765, 829
NlaIV GGNNCC 3 cut(s) 347, 473, 505
NmuCI GTSAC 1 cut(s) 280
NsbI TGCGCA 1 cut(s) 886
OliI CACNNNNGTG 1 cut(s) 380
PctI GAATGC 2 cut(s) 598, 887
PflMI CCANNNNNTGG 1 cut(s) 588
PkrI GCNGC 1 cut(s) 246
PleI GAGTC 1 cut(s) 541
PpsI GAGTC 1 cut(s) 541
PshBI ATTAAT 1 cut(s) 684
Psp6I CCWGG 1 cut(s) 259
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 3 cut(s) 347, 473, 505
PspPI GGNCC 2 cut(s) 639, 699
PvuII CAGCTG 1 cut(s) 752
RsaI GTAC 1 cut(s) 505
RsaNI GTAC 1 cut(s) 504
RseI CAYNNNNRTG 2 cut(s) 378, 380
SaqAI TTAA 5 cut(s) 149, 249, 311, 627, 684
SatI GCNGC 1 cut(s) 245
Sau3AI GATC 1 cut(s) 358
Sau96I GGNCC 2 cut(s) 639, 699
SchI GAGTC 1 cut(s) 542
ScrFI CCNGG 1 cut(s) 261
SfaNI GCATC 1 cut(s) 719
SfcI CTRYAG 1 cut(s) 664
SinI GGWCC 2 cut(s) 639, 699
SmiMI CAYNNNNRTG 2 cut(s) 378, 380
SmlI CTYRAG 2 cut(s) 248, 876
SmoI CTYRAG 2 cut(s) 248, 876
Sse9I AATT 3 cut(s) 97, 537, 835
SsiI CCGC 1 cut(s) 657
SspMI CTAG 3 cut(s) 93, 612, 744
StyD4I CCNGG 1 cut(s) 259
StyI CCWWGG 2 cut(s) 391, 865
TaaI ACNGT 3 cut(s) 280, 417, 894
TasI AATT 3 cut(s) 97, 537, 835
Tru1I TTAA 5 cut(s) 149, 249, 311, 627, 684
Tru9I TTAA 5 cut(s) 149, 249, 311, 627, 684
TscAI CASTG 3 cut(s) 283, 289, 501
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 280
TspRI CASTG 3 cut(s) 283, 289, 501
Van91I CCANNNNNTGG 1 cut(s) 588
Vha464I CTTAAG 1 cut(s) 248
VpaK11BI GGWCC 2 cut(s) 639, 699
VspI ATTAAT 1 cut(s) 684
XagI CCTNNNNNAGG 1 cut(s) 664
XspI CTAG 3 cut(s) 93, 612, 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.