RchiOBHm_Chr4g0402951

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000460
Physical Location & Seq
Forward (+)
21925084 .. 21926375
1292 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37472

Sequence Viewer

Length: 948 bp
ATGCCATCCCAACTTCTCTCATTCATAACCATCCTTCCATTTCCAGACTTCACTCCACACAAAACATTCACAGATATATCCATGGCTTCTTCAACTTCAATGCTTCTGTTCGTTCCATTTCTGCTAATTAGCTCTGTTATGGTTGCCTCTGCTGGTAACTTCAACCAAGACTTTAAGATTACATGGGGAGACGGTCGAGCCAACATACTCAACGACGGCCAACTTCTTACTCTCTCACTCGACAAAACCTCTGGCTCTGGTTTTGAATCCAAAAACGAATACCTCTTCGGCAAGATTGACATGCAGCTCAAGCTTGTCGCCGGAAACTCTGCCGGCACCGTCACAGCCTACTACTTAAAATCAGAAGGGTCTACATGGGATGAGATAGACTTTGAGTTCTTGGGAAACCTGAGTGGCAACCCTTACACTCTTCACACCAATGTCTTCAGCCAAGGCAAAGGAAACAGAGAACAGCAATTCCATCTCTGGTTCGACCCAACTGCTGATTTCCACACCTATTCCATTCTCTGGAATCCACAGCGCATTGTTTTCTCTGTTGATGGTACTCCCATTAGAGAGTTCAAGAACCAAGAGTCGAATGGTGTTTCATTCCCAAAGAGCCAAGCAATGAGAATACACTCGAGCCTCTGGAATGCTGATGATTGGGCAACAATGGGAGGACGTGTAAAGACGGATTGGAATGCAGCTCCGTTCACTGCTTCTTACAGGAATTTCAATGCTGAAGCTTGCGTTTGGGCTTCTGGATCATCTTCTTGCGGTTCAAGAAGTGCCCCTGCTTCGACTAATGGAGATTGGCTTTCGCAAGAATTGGACAGTGCTAGTTATGAAAAGCTGAGTTGGGTGCAGAAAAACTACATGATCTACAATTACTGCACCGATGTCAACAGATTCCCTCAGGGTCTCCCAGTTGAATGCAGCACTTCTTAG

Protein Analysis

315

Amino Acids

35.11

Weight (kDa)

5.11

Isoelectric Point (pI)

34.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 54 - 234 1.9e-67 Glycosyl hydrolases family 16
XET_C PF06955 268 - 312 1.4e-19 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 335
AccB7I CCANNNNNTGG 1 cut(s) 528
AccI GTMKAC 1 cut(s) 371
AciI CCGC 1 cut(s) 777
AclWI GGATC 1 cut(s) 772
AcoI YGGCCR 1 cut(s) 217
AcsI RAATTY 1 cut(s) 730
AcuI CTGAAG 2 cut(s) 430, 762
AfaI GTAC 1 cut(s) 565
AfiI CCNNNNNNNGG 1 cut(s) 528
AflIII ACRYGT 1 cut(s) 682
AgsI TTSAA 8 cut(s) 93, 99, 163, 266, 583, 736, 783, 932
AjiI CACGTC 1 cut(s) 683
AloI GAACNNNNNNTCC 2 cut(s) 462, 494
AluBI AGCT 6 cut(s) 132, 307, 313, 707, 746, 853
AluI AGCT 6 cut(s) 132, 307, 313, 707, 746, 853
Alw26I GTCTC 2 cut(s) 183, 926
AlwI GGATC 1 cut(s) 772
Ama87I CYCGRG 1 cut(s) 640
AoxI GGCC 1 cut(s) 217
ApeKI GCWGC 3 cut(s) 304, 704, 936
ApoI RAATTY 1 cut(s) 730
AspLEI GCGC 1 cut(s) 543
AvaI CYCGRG 1 cut(s) 640
AxyI CCTNAGG 1 cut(s) 915
BaeGI GKGCMC 1 cut(s) 793
BanI GGYRCC 1 cut(s) 335
BbsI GAAGAC 1 cut(s) 436
BbvI GCAGC 2 cut(s) 316, 716
BccI CCATC 4 cut(s) 13, 38, 489, 554
BceAI ACGGC 1 cut(s) 232
BcgI CGANNNNNNTGC 2 cut(s) 482, 516
BcoDI GTCTC 2 cut(s) 183, 926
BfaI CTAG 1 cut(s) 840
BisI GCNGC 3 cut(s) 305, 705, 937
BlsI GCNGC 3 cut(s) 306, 706, 938
BmeT110I CYCGRG 1 cut(s) 640
BmgBI CACGTC 1 cut(s) 683
BmiI GGNNCC 1 cut(s) 337
BmrI ACTGGG 1 cut(s) 920
BmuI ACTGGG 1 cut(s) 920
BpiI GAAGAC 1 cut(s) 436
BpuEI CTTGAG 1 cut(s) 293
BsaI GGTCTC 1 cut(s) 926
BsaJI CCNNGG 2 cut(s) 81, 451
BsaXI ACNNNNNCTCC 2 cut(s) 669, 699
Bsc4I CCNNNNNNNGG 1 cut(s) 528
Bse118I RCCGGY 1 cut(s) 332
Bse1I ACTGG 1 cut(s) 926
Bse21I CCTNAGG 1 cut(s) 915
Bse3DI GCAATG 1 cut(s) 633
BseDI CCNNGG 2 cut(s) 81, 451
BseGI GGATG 3 cut(s) 5, 30, 385
BseLI CCNNNNNNNGG 1 cut(s) 528
BseMI GCAATG 1 cut(s) 633
BseMII CTCAG 3 cut(s) 401, 845, 929
BseNI ACTGG 1 cut(s) 926
BseSI GKGCMC 1 cut(s) 793
BseXI GCAGC 2 cut(s) 316, 716
BsgI GTGCAG 2 cut(s) 877, 884
Bsh1285I CGRYCG 1 cut(s) 196
BshFI GGCC 1 cut(s) 219
BshNI GGYRCC 1 cut(s) 335
BsiEI CGRYCG 1 cut(s) 196
BsiHKCI CYCGRG 1 cut(s) 640
BsiSI CCGG 2 cut(s) 321, 333
BslI CCNNNNNNNGG 1 cut(s) 528
BsmAI GTCTC 2 cut(s) 183, 926
BsmBI CGTCTC 1 cut(s) 183
BsmI GAATGC 3 cut(s) 658, 706, 938
BsnI GGCC 1 cut(s) 219
Bso31I GGTCTC 1 cut(s) 926
BsoBI CYCGRG 1 cut(s) 640
Bsp1286I GDGCHC 1 cut(s) 793
Bsp143I GATC 2 cut(s) 764, 879
Bsp19I CCATGG 1 cut(s) 81
BspACI CCGC 1 cut(s) 777
BspANI GGCC 1 cut(s) 219
BspCNI CTCAG 3 cut(s) 402, 846, 928
BspLI GGNNCC 1 cut(s) 337
BspPI GGATC 1 cut(s) 772
BspT107I GGYRCC 1 cut(s) 335
BspTNI GGTCTC 1 cut(s) 926
BsrDI GCAATG 1 cut(s) 633
BsrFI RCCGGY 1 cut(s) 332
BsrI ACTGG 1 cut(s) 926
BssAI RCCGGY 1 cut(s) 332
BssECI CCNNGG 2 cut(s) 81, 451
BssMI GATC 2 cut(s) 764, 879
BssT1I CCWWGG 2 cut(s) 81, 451
Bst4CI ACNGT 3 cut(s) 194, 340, 836
Bst6I CTCTTC 2 cut(s) 290, 435
BstC8I GCNNGC 2 cut(s) 334, 748
BstDEI CTNAG 4 cut(s) 410, 854, 915, 945
BstDSI CCRYGG 1 cut(s) 81
BstF5I GGATG 3 cut(s) 5, 30, 385
BstHHI GCGC 1 cut(s) 543
BstKTI GATC 2 cut(s) 767, 882
BstMAI GTCTC 2 cut(s) 183, 926
BstMBI GATC 2 cut(s) 764, 879
BstMCI CGRYCG 1 cut(s) 196
BstMWI GCNNNNNNNGC 1 cut(s) 310
BstNSI RCATGY 1 cut(s) 304
BstSLI GKGCMC 1 cut(s) 793
BstV1I GCAGC 2 cut(s) 316, 716
BstV2I GAAGAC 1 cut(s) 436
Bsu36I CCTNAGG 1 cut(s) 915
BsuRI GGCC 1 cut(s) 219
BtgI CCRYGG 1 cut(s) 81
BtrI CACGTC 1 cut(s) 683
BtsCI GGATG 3 cut(s) 5, 30, 385
BtsI GCAGTG 1 cut(s) 714
BtsIMutI CAGTG 2 cut(s) 714, 841
Cac8I GCNNGC 2 cut(s) 334, 748
CfoI GCGC 1 cut(s) 543
Cfr10I RCCGGY 1 cut(s) 332
Csp6I GTAC 1 cut(s) 564
CviAII CATG 5 cut(s) 82, 183, 301, 375, 877
CviQI GTAC 1 cut(s) 564
DdeI CTNAG 4 cut(s) 410, 854, 915, 945
DpnI GATC 2 cut(s) 766, 881
DpnII GATC 2 cut(s) 764, 879
EaeI YGGCCR 1 cut(s) 217
Eam1104I CTCTTC 2 cut(s) 290, 435
EarI CTCTTC 2 cut(s) 290, 435
Eco130I CCWWGG 2 cut(s) 81, 451
Eco31I GGTCTC 1 cut(s) 926
Eco57I CTGAAG 2 cut(s) 430, 762
Eco81I CCTNAGG 1 cut(s) 915
Eco88I CYCGRG 1 cut(s) 640
EcoT14I CCWWGG 2 cut(s) 81, 451
ErhI CCWWGG 2 cut(s) 81, 451
Esp3I CGTCTC 1 cut(s) 183
FaeI CATG 5 cut(s) 85, 186, 304, 378, 880
FatI CATG 5 cut(s) 81, 182, 300, 374, 876
FblI GTMKAC 1 cut(s) 371
Fnu4HI GCNGC 3 cut(s) 305, 705, 937
FokI GGATG 2 cut(s) 17, 392
Fsp4HI GCNGC 3 cut(s) 305, 705, 937
FspBI CTAG 1 cut(s) 840
GlaI GCGC 1 cut(s) 542
GluI GCNGC 3 cut(s) 305, 705, 937
HaeIII GGCC 1 cut(s) 219
HapII CCGG 2 cut(s) 321, 333
HhaI GCGC 1 cut(s) 543
Hin1II CATG 5 cut(s) 85, 186, 304, 378, 880
Hin6I GCGC 1 cut(s) 541
HinP1I GCGC 1 cut(s) 541
HincII GTYRAC 1 cut(s) 904
HindII GTYRAC 1 cut(s) 904
HindIII AAGCTT 2 cut(s) 311, 744
HinfI GANTC 4 cut(s) 266, 532, 593, 909
HpaII CCGG 2 cut(s) 321, 333
Hpy166II GTNNAC 3 cut(s) 372, 714, 904
Hpy188I TCNGA 1 cut(s) 364
Hpy188III TCNNGA 6 cut(s) 44, 529, 583, 649, 762, 783
Hpy8I GTNNAC 3 cut(s) 372, 714, 904
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 2 cut(s) 44, 359
HpyCH4III ACNGT 3 cut(s) 194, 340, 836
HpyCH4IV ACGT 1 cut(s) 682
HpyCH4V TGCA 5 cut(s) 304, 704, 865, 894, 936
HpyF10VI GCNNNNNNNGC 1 cut(s) 310
HpyF3I CTNAG 4 cut(s) 410, 854, 915, 945
HpySE526I ACGT 1 cut(s) 682
Hsp92II CATG 5 cut(s) 85, 186, 304, 378, 880
HspAI GCGC 1 cut(s) 541
KroI GCCGGC 1 cut(s) 332
KroNI GCCGGC 1 cut(s) 334
Kzo9I GATC 2 cut(s) 764, 879
LmnI GCTCC 1 cut(s) 712
Lsp1109I GCAGC 2 cut(s) 316, 716
MaeI CTAG 1 cut(s) 840
MaeII ACGT 1 cut(s) 682
MaeIII GTNAC 2 cut(s) 155, 340
MalI GATC 2 cut(s) 766, 881
MboI GATC 2 cut(s) 764, 879
MboII GAAGA 5 cut(s) 81, 277, 422, 436, 762
MhlI GDGCHC 1 cut(s) 793
MluCI AATT 5 cut(s) 126, 476, 730, 827, 886
MlyI GAGTC 1 cut(s) 602
MnlI CCTC 6 cut(s) 157, 259, 293, 656, 671, 924
MroNI GCCGGC 1 cut(s) 332
MseI TTAA 2 cut(s) 174, 356
MslI CAYNNNNRTG 1 cut(s) 438
MspI CCGG 2 cut(s) 321, 333
Mva1269I GAATGC 3 cut(s) 658, 706, 938
MwoI GCNNNNNNNGC 1 cut(s) 310
NaeI GCCGGC 1 cut(s) 334
NcoI CCATGG 1 cut(s) 81
NdeII GATC 2 cut(s) 764, 879
NgoMIV GCCGGC 1 cut(s) 332
NlaIII CATG 5 cut(s) 85, 186, 304, 378, 880
NlaIV GGNNCC 1 cut(s) 337
NmuCI GTSAC 1 cut(s) 340
NspI RCATGY 1 cut(s) 304
PaeR7I CTCGAG 1 cut(s) 640
PctI GAATGC 3 cut(s) 658, 706, 938
PdiI GCCGGC 1 cut(s) 334
PfeI GAWTC 3 cut(s) 266, 532, 909
PflMI CCANNNNNTGG 1 cut(s) 528
PkrI GCNGC 3 cut(s) 306, 706, 938
PleI GAGTC 1 cut(s) 601
PpsI GAGTC 1 cut(s) 601
PspN4I GGNNCC 1 cut(s) 337
PspXI VCTCGAGB 1 cut(s) 640
RsaI GTAC 1 cut(s) 565
RsaNI GTAC 1 cut(s) 564
RseI CAYNNNNRTG 1 cut(s) 438
SaqAI TTAA 2 cut(s) 174, 356
SatI GCNGC 3 cut(s) 305, 705, 937
Sau3AI GATC 2 cut(s) 764, 879
SchI GAGTC 1 cut(s) 602
SduI GDGCHC 1 cut(s) 793
Sfr274I CTCGAG 1 cut(s) 640
SlaI CTCGAG 1 cut(s) 640
SmiMI CAYNNNNRTG 1 cut(s) 438
SmlI CTYRAG 2 cut(s) 308, 640
SmoI CTYRAG 2 cut(s) 308, 640
Sse9I AATT 5 cut(s) 126, 476, 730, 827, 886
SsiI CCGC 1 cut(s) 777
SspMI CTAG 1 cut(s) 840
StyI CCWWGG 2 cut(s) 81, 451
TaaI ACNGT 3 cut(s) 194, 340, 836
TaiI ACGT 1 cut(s) 685
TaqI TCGA 6 cut(s) 196, 240, 492, 596, 641, 800
TasI AATT 5 cut(s) 126, 476, 730, 827, 886
TfiI GAWTC 3 cut(s) 266, 532, 909
Tru1I TTAA 2 cut(s) 174, 356
Tru9I TTAA 2 cut(s) 174, 356
TscAI CASTG 2 cut(s) 721, 841
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 3 cut(s) 304, 704, 936
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 3 cut(s) 13, 597, 861
TspGWI ACGGA 2 cut(s) 699, 707
TspRI CASTG 2 cut(s) 721, 841
Van91I CCANNNNNTGG 1 cut(s) 528
XapI RAATTY 1 cut(s) 730
XceI RCATGY 1 cut(s) 304
XcmI CCANNNNNNNNNTGG 1 cut(s) 596
XhoI CTCGAG 1 cut(s) 640
XmiI GTMKAC 1 cut(s) 371
XspI CTAG 1 cut(s) 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.