FvH4_4g09230

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
10726644 .. 10728162
1519 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g09230.t1

Sequence Viewer

Length: 876 bp
ATGGCGTCTTTCAAATCTGCTCTTTCACTGTTGCTGCTTTCTATAACTCTTCTTGTTATGGTTGCCGAGGCTGGTAACTTCAACCAGGACTTTCAGATTACATGGGGAGATGGCCGAGCCAAGATACTCAACAATGGCCAACTTCTTACTCTCTCCCTCGACAAAGCCTCTGGCTCTGGTTTTGAATCCAAAAATGAATATCTCTTCGGCAAAATCGATATGCAGCTCAAGCTTGTTCCTGGAAACTCTGCTGGAACTGTCACTGCCTACTACTTACGCTCAGAAGGATCATTATGGGATGAGATAGACTTTGAGTTCTTGGGCAACCTGAGTGGTGACCCTTACATTCTTCACACCAATGTGTTCAGCCAAGGCAAAGGAAACCGAGAGCAGCAGTTCTATCTCTGGTTCGACCCAACCGCGGATTTCCACTCCTATTCCATTCTCTGGAATCCTCATCGCATTGTTTTCTCTGTGGATGGAACTCCCATTAGAGAGTTCAAGAACATGGAATCACTTGGCGTTCCATTCCCAAAGAACCAGCCAATGAAACTAACCTCTAGTCTCTGGAATGCTGATGATTGGGCAACTAGAGGAGGGCTTGTGAAGACAGATTGGAGCAAAGCTCCTTTCACTGCTTCCTACGGGAACTTCAACGCCGATAAGGCTTGTATTTGGTCAAGGACCAAAAAAGCATCTTCATGCAGTTCGTCATCGTCAAGTTCTACAAAACCTGGTAATGAATGGCTCGCAGAAAAACTCGACACAACGAGGCAGGCGAGGCTGAGATGGGTGCAGAAGAACTACATGATCTATAATTACTGCTCTGACATTAAGAGATTTCCTCAGGGGCTCCCTACTGAATGCAAGTCGTGA

Protein Analysis

292

Amino Acids

32.74

Weight (kDa)

8.54

Isoelectric Point (pI)

33.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 27 - 208 5.7e-66 Glycosyl hydrolases family 16
XET_C PF06955 246 - 289 2.8e-20 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 447
AccII CGCG 1 cut(s) 422
AciI CCGC 2 cut(s) 420, 422
AclWI GGATC 1 cut(s) 295
AcoI YGGCCR 2 cut(s) 112, 136
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 421, 447
AgsI TTSAA 5 cut(s) 13, 82, 185, 502, 655
AjnI CCWGG 3 cut(s) 84, 238, 733
AleI CACNNNNGTG 1 cut(s) 359
AluBI AGCT 3 cut(s) 226, 232, 626
AluI AGCT 3 cut(s) 226, 232, 626
Alw26I GTCTC 1 cut(s) 569
AlwI GGATC 1 cut(s) 295
AoxI GGCC 2 cut(s) 112, 136
ApeKI GCWGC 3 cut(s) 34, 223, 391
AspS9I GGNCC 1 cut(s) 684
AsuHPI GGTGA 1 cut(s) 347
AvaII GGWCC 1 cut(s) 684
AxyI CCTNAGG 1 cut(s) 846
BalI TGGCCA 1 cut(s) 138
BanII GRGCYC 1 cut(s) 855
BbsI GAAGAC 1 cut(s) 614
BbvI GCAGC 3 cut(s) 21, 235, 403
BccI CCATC 3 cut(s) 104, 473, 783
BciT130I CCWGG 3 cut(s) 86, 240, 735
BcoDI GTCTC 1 cut(s) 569
BfaI CTAG 2 cut(s) 561, 591
BglI GCCNNNNNGGC 1 cut(s) 665
BisI GCNGC 3 cut(s) 35, 224, 392
BlsI GCNGC 3 cut(s) 36, 225, 393
Bme1390I CCNGG 3 cut(s) 86, 240, 735
Bme18I GGWCC 1 cut(s) 684
BmgT120I GGNCC 1 cut(s) 684
BmiI GGNNCC 1 cut(s) 854
BmrFI CCNGG 3 cut(s) 86, 240, 735
BmsI GCATC 1 cut(s) 704
BpiI GAAGAC 1 cut(s) 614
BplI GAGNNNNNCTC 4 cut(s) 610, 642, 829, 861
BpuEI CTTGAG 1 cut(s) 212
Bsa29I ATCGAT 1 cut(s) 216
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 66, 370, 420
BsaXI ACNNNNNCTCC 2 cut(s) 588, 618
Bsc4I CCNNNNNNNGG 2 cut(s) 421, 447
Bse21I CCTNAGG 1 cut(s) 846
BseBI CCWGG 3 cut(s) 86, 240, 735
BseCI ATCGAT 1 cut(s) 216
BseDI CCNNGG 3 cut(s) 66, 370, 420
BseGI GGATG 2 cut(s) 304, 484
BseLI CCNNNNNNNGG 2 cut(s) 421, 447
BseMII CTCAG 4 cut(s) 294, 320, 776, 860
BseRI GAGGAG 1 cut(s) 609
BseXI GCAGC 3 cut(s) 21, 235, 403
BsgI GTGCAG 1 cut(s) 815
Bsh1236I CGCG 1 cut(s) 422
BshFI GGCC 2 cut(s) 114, 138
BshVI ATCGAT 1 cut(s) 216
BslI CCNNNNNNNGG 2 cut(s) 421, 447
BsmAI GTCTC 1 cut(s) 569
BsmI GAATGC 2 cut(s) 577, 869
BsnI GGCC 2 cut(s) 114, 138
Bsp1286I GDGCHC 1 cut(s) 855
Bsp143I GATC 2 cut(s) 287, 810
BspACI CCGC 2 cut(s) 420, 422
BspANI GGCC 2 cut(s) 114, 138
BspCNI CTCAG 4 cut(s) 293, 321, 777, 859
BspDI ATCGAT 1 cut(s) 216
BspFNI CGCG 1 cut(s) 422
BspLI GGNNCC 1 cut(s) 854
BspPI GGATC 1 cut(s) 295
BssECI CCNNGG 3 cut(s) 66, 370, 420
BssMI GATC 2 cut(s) 287, 810
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 370
Bst2UI CCWGG 3 cut(s) 86, 240, 735
Bst4CI ACNGT 2 cut(s) 30, 259
Bst6I CTCTTC 2 cut(s) 54, 209
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 2 cut(s) 750, 777
BstDEI CTNAG 4 cut(s) 280, 329, 785, 846
BstDSI CCRYGG 1 cut(s) 420
BstEII GGTNACC 1 cut(s) 335
BstF5I GGATG 2 cut(s) 304, 484
BstFNI CGCG 1 cut(s) 422
BstKTI GATC 2 cut(s) 290, 813
BstMAI GTCTC 1 cut(s) 569
BstMBI GATC 2 cut(s) 287, 810
BstMWI GCNNNNNNNGC 3 cut(s) 229, 665, 781
BstNI CCWGG 3 cut(s) 86, 240, 735
BstPI GGTNACC 1 cut(s) 335
BstSCI CCNGG 3 cut(s) 84, 238, 733
BstUI CGCG 1 cut(s) 422
BstV1I GCAGC 3 cut(s) 21, 235, 403
BstV2I GAAGAC 1 cut(s) 614
Bsu15I ATCGAT 1 cut(s) 216
Bsu36I CCTNAGG 1 cut(s) 846
BsuRI GGCC 2 cut(s) 114, 138
BsuTUI ATCGAT 1 cut(s) 216
BtgI CCRYGG 1 cut(s) 420
BtgZI GCGATG 1 cut(s) 443
BtsCI GGATG 2 cut(s) 304, 484
BtsI GCAGTG 2 cut(s) 261, 633
BtsIMutI CAGTG 3 cut(s) 26, 261, 633
Cac8I GCNNGC 2 cut(s) 750, 777
Cfr13I GGNCC 1 cut(s) 684
Cfr42I CCGCGG 1 cut(s) 423
ClaI ATCGAT 1 cut(s) 216
CsiI ACCWGGT 1 cut(s) 733
CspCI CAANNNNNGTGG 2 cut(s) 313, 348
CviAII CATG 4 cut(s) 102, 508, 702, 808
DdeI CTNAG 4 cut(s) 280, 329, 785, 846
DpnI GATC 2 cut(s) 289, 812
DpnII GATC 2 cut(s) 287, 810
EaeI YGGCCR 2 cut(s) 112, 136
Eam1104I CTCTTC 2 cut(s) 54, 209
EarI CTCTTC 2 cut(s) 54, 209
Eco130I CCWWGG 1 cut(s) 370
Eco24I GRGCYC 1 cut(s) 855
Eco47I GGWCC 1 cut(s) 684
Eco81I CCTNAGG 1 cut(s) 846
Eco91I GGTNACC 1 cut(s) 335
EcoO65I GGTNACC 1 cut(s) 335
EcoRII CCWGG 3 cut(s) 84, 238, 733
EcoT14I CCWWGG 1 cut(s) 370
EcoT38I GRGCYC 1 cut(s) 855
ErhI CCWWGG 1 cut(s) 370
FaeI CATG 4 cut(s) 105, 511, 705, 811
FaiI YATR 9 cut(s) 44, 59, 103, 221, 295, 509, 703, 809, 816
FatI CATG 4 cut(s) 101, 507, 701, 807
Fnu4HI GCNGC 3 cut(s) 35, 224, 392
FokI GGATG 2 cut(s) 311, 491
FriOI GRGCYC 1 cut(s) 855
Fsp4HI GCNGC 3 cut(s) 35, 224, 392
FspBI CTAG 2 cut(s) 561, 591
GluI GCNGC 3 cut(s) 35, 224, 392
HaeIII GGCC 2 cut(s) 114, 138
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 105, 511, 705, 811
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 3 cut(s) 185, 451, 512
HphI GGTGA 1 cut(s) 347
Hpy188I TCNGA 3 cut(s) 96, 283, 829
Hpy188III TCNNGA 4 cut(s) 448, 502, 568, 873
HpyAV CCTTC 1 cut(s) 278
HpyCH4III ACNGT 2 cut(s) 30, 259
HpyCH4V TGCA 4 cut(s) 223, 705, 796, 867
HpyF10VI GCNNNNNNNGC 3 cut(s) 229, 665, 781
HpyF3I CTNAG 4 cut(s) 280, 329, 785, 846
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 105, 511, 705, 811
KspI CCGCGG 1 cut(s) 423
Kzo9I GATC 2 cut(s) 287, 810
LmnI GCTCC 3 cut(s) 618, 631, 858
Lsp1109I GCAGC 3 cut(s) 21, 235, 403
LweI GCATC 1 cut(s) 704
MabI ACCWGGT 1 cut(s) 733
MaeI CTAG 2 cut(s) 561, 591
MaeIII GTNAC 3 cut(s) 74, 259, 335
MalI GATC 2 cut(s) 289, 812
MboI GATC 2 cut(s) 287, 810
MboII GAAGA 6 cut(s) 41, 196, 341, 619, 690, 811
MhlI GDGCHC 1 cut(s) 855
MlsI TGGCCA 1 cut(s) 138
MluCI AATT 1 cut(s) 817
MluNI TGGCCA 1 cut(s) 138
Mox20I TGGCCA 1 cut(s) 138
MscI TGGCCA 1 cut(s) 138
MseI TTAA 1 cut(s) 834
MslI CAYNNNNRTG 3 cut(s) 357, 359, 700
Msp20I TGGCCA 1 cut(s) 138
MspA1I CMGCKG 1 cut(s) 422
MspR9I CCNGG 3 cut(s) 86, 240, 735
Mva1269I GAATGC 2 cut(s) 577, 869
MvaI CCWGG 3 cut(s) 86, 240, 735
MvnI CGCG 1 cut(s) 422
MwoI GCNNNNNNNGC 3 cut(s) 229, 665, 781
NdeII GATC 2 cut(s) 287, 810
NlaIII CATG 4 cut(s) 105, 511, 705, 811
NlaIV GGNNCC 1 cut(s) 854
NmeAIII GCCGAG 2 cut(s) 91, 140
NmuCI GTSAC 2 cut(s) 259, 335
OliI CACNNNNGTG 1 cut(s) 359
PcsI WCGNNNNNNNCGW 2 cut(s) 213, 776
PctI GAATGC 2 cut(s) 577, 869
PfeI GAWTC 3 cut(s) 185, 451, 512
PflMI CCANNNNNTGG 1 cut(s) 447
PfoI TCCNGGA 1 cut(s) 238
PkrI GCNGC 3 cut(s) 36, 225, 393
Psp6I CCWGG 3 cut(s) 84, 238, 733
PspEI GGTNACC 1 cut(s) 335
PspGI CCWGG 3 cut(s) 84, 238, 733
PspN4I GGNNCC 1 cut(s) 854
PspPI GGNCC 1 cut(s) 684
RseI CAYNNNNRTG 3 cut(s) 357, 359, 700
SacII CCGCGG 1 cut(s) 423
SaqAI TTAA 1 cut(s) 834
SatI GCNGC 3 cut(s) 35, 224, 392
Sau3AI GATC 2 cut(s) 287, 810
Sau96I GGNCC 1 cut(s) 684
ScrFI CCNGG 3 cut(s) 86, 240, 735
SduI GDGCHC 1 cut(s) 855
SetI ASST 6 cut(s) 228, 234, 330, 560, 628, 736
SexAI ACCWGGT 1 cut(s) 733
SfaNI GCATC 1 cut(s) 704
Sfr303I CCGCGG 1 cut(s) 423
SgrBI CCGCGG 1 cut(s) 423
SinI GGWCC 1 cut(s) 684
SmiMI CAYNNNNRTG 3 cut(s) 357, 359, 700
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 1 cut(s) 817
SsiI CCGC 2 cut(s) 420, 422
SspMI CTAG 2 cut(s) 561, 591
StyD4I CCNGG 3 cut(s) 84, 238, 733
StyI CCWWGG 1 cut(s) 370
TaaI ACNGT 2 cut(s) 30, 259
TaqI TCGA 4 cut(s) 159, 216, 411, 762
TasI AATT 1 cut(s) 817
TfiI GAWTC 3 cut(s) 185, 451, 512
Tru1I TTAA 1 cut(s) 834
Tru9I TTAA 1 cut(s) 834
TscAI CASTG 3 cut(s) 33, 268, 640
TseFI GTSAC 2 cut(s) 259, 335
TseI GCWGC 3 cut(s) 34, 223, 391
Tsp45I GTSAC 2 cut(s) 259, 335
TspDTI ATGAA 4 cut(s) 210, 563, 690, 756
TspRI CASTG 3 cut(s) 33, 268, 640
Van91I CCANNNNNTGG 1 cut(s) 447
VpaK11BI GGWCC 1 cut(s) 684
XspI CTAG 2 cut(s) 561, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.