Rmu_co8186292.1_g000001

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8186292.1
OG0000460
Physical Location & Seq
Forward (+)
1 .. 596
596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8186292.1_g000001.1.cds

Sequence Viewer

Length: 492 bp
caacaattctatctctggttcgacccaactgctgatttccacacctattccattctctggaatccacagcgcattgttttctctgtggatggaactcccattagagagttcaagaacatggaatcaattggcgttccattcccaaagaaccagccaatgagattaacctctagtctgtggaatgctgatgattgggcaacaaggggagggcttgtgaagacagactggagcaaagctcctttcactgcttcctacaggaacttcaatgccgacaaggcttgtatttggtcaaggactaacaaaacatcttcgtgcagctcatcatcgtcatcgtcaagttctaaaatacctggtaatgaatggctcacagaagatctcgacacaacgaagcaggggaggctgagatgggtgcagaagaactacatgatctataattactgctctgacattaagagatttccccagggactccctactgaatgcaagtcataa

Protein Analysis

163

Amino Acids

18.83

Weight (kDa)

9.08

Isoelectric Point (pI)

55.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 57
AfiI CCNNNNNNNGG 1 cut(s) 57
AgsI TTSAA 2 cut(s) 112, 265
AjnI CCWGG 2 cut(s) 349, 462
AluBI AGCT 2 cut(s) 236, 318
AluI AGCT 2 cut(s) 236, 318
ApeKI GCWGC 1 cut(s) 315
AspLEI GCGC 1 cut(s) 72
BbsI GAAGAC 1 cut(s) 224
BbvI GCAGC 1 cut(s) 327
BccI CCATC 2 cut(s) 83, 399
BcgI CGANNNNNNTGC 2 cut(s) 11, 45
BciT130I CCWGG 2 cut(s) 351, 464
BfaI CTAG 1 cut(s) 171
BfmI CTRYAG 1 cut(s) 253
BglI GCCNNNNNGGC 1 cut(s) 275
BglII AGATCT 1 cut(s) 373
BisI GCNGC 1 cut(s) 316
BlsI GCNGC 1 cut(s) 317
Bme1390I CCNGG 2 cut(s) 351, 464
BmrFI CCNGG 2 cut(s) 351, 464
BpiI GAAGAC 1 cut(s) 224
BplI GAGNNNNNCTC 2 cut(s) 220, 252
BpmI CTGGAG 1 cut(s) 247
BsaJI CCNNGG 2 cut(s) 462, 463
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
Bsc4I CCNNNNNNNGG 1 cut(s) 57
Bse1I ACTGG 1 cut(s) 230
BseBI CCWGG 2 cut(s) 351, 464
BseDI CCNNGG 2 cut(s) 462, 463
BseGI GGATG 1 cut(s) 94
BseLI CCNNNNNNNGG 1 cut(s) 57
BseMII CTCAG 1 cut(s) 392
BseNI ACTGG 1 cut(s) 230
BseXI GCAGC 1 cut(s) 327
BsgI GTGCAG 2 cut(s) 334, 431
BslFI GGGAC 1 cut(s) 480
BslI CCNNNNNNNGG 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 480
BsmI GAATGC 2 cut(s) 187, 485
Bsp143I GATC 2 cut(s) 373, 426
BspCNI CTCAG 1 cut(s) 393
BsrI ACTGG 1 cut(s) 230
BssECI CCNNGG 2 cut(s) 462, 463
BssMI GATC 2 cut(s) 373, 426
Bst2UI CCWGG 2 cut(s) 351, 464
BstDEI CTNAG 1 cut(s) 401
BstF5I GGATG 1 cut(s) 94
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 2 cut(s) 376, 429
BstMBI GATC 2 cut(s) 373, 426
BstMWI GCNNNNNNNGC 2 cut(s) 275, 397
BstNI CCWGG 2 cut(s) 351, 464
BstSCI CCNGG 2 cut(s) 349, 462
BstSFI CTRYAG 1 cut(s) 253
BstV1I GCAGC 1 cut(s) 327
BstV2I GAAGAC 1 cut(s) 224
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
BtsCI GGATG 1 cut(s) 94
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 1 cut(s) 243
CfoI GCGC 1 cut(s) 72
CsiI ACCWGGT 1 cut(s) 349
CviAII CATG 2 cut(s) 118, 424
CviJI RGCY 7 cut(s) 154, 211, 236, 278, 318, 364, 400
CviKI_1 RGCY 7 cut(s) 154, 211, 236, 278, 318, 364, 400
DdeI CTNAG 1 cut(s) 401
DpnI GATC 2 cut(s) 375, 428
DpnII GATC 2 cut(s) 373, 426
EcoRII CCWGG 2 cut(s) 349, 462
FaeI CATG 2 cut(s) 121, 427
FaiI YATR 4 cut(s) 119, 425, 432, 490
FaqI GGGAC 1 cut(s) 480
FatI CATG 2 cut(s) 117, 423
Fnu4HI GCNGC 1 cut(s) 316
FokI GGATG 1 cut(s) 101
Fsp4HI GCNGC 1 cut(s) 316
FspBI CTAG 1 cut(s) 171
GlaI GCGC 1 cut(s) 71
GluI GCNGC 1 cut(s) 316
GsuI CTGGAG 1 cut(s) 247
HhaI GCGC 1 cut(s) 72
Hin1II CATG 2 cut(s) 121, 427
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HinfI GANTC 3 cut(s) 61, 122, 468
Hpy188I TCNGA 1 cut(s) 445
Hpy188III TCNNGA 3 cut(s) 58, 112, 377
HpyCH4V TGCA 3 cut(s) 315, 412, 483
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 397
HpyF3I CTNAG 1 cut(s) 401
Hsp92II CATG 2 cut(s) 121, 427
HspAI GCGC 1 cut(s) 70
Kzo9I GATC 2 cut(s) 373, 426
LmnI GCTCC 2 cut(s) 228, 241
LpnPI CCDG 9 cut(s) 43, 164, 211, 241, 336, 363, 377, 449, 476
Lsp1109I GCAGC 1 cut(s) 327
MabI ACCWGGT 1 cut(s) 349
MaeI CTAG 1 cut(s) 171
MalI GATC 2 cut(s) 375, 428
MboI GATC 2 cut(s) 373, 426
MboII GAAGA 4 cut(s) 229, 300, 383, 427
MfeI CAATTG 1 cut(s) 126
MflI RGATCY 1 cut(s) 373
MluCI AATT 3 cut(s) 5, 126, 433
MlyI GAGTC 1 cut(s) 462
MnlI CCTC 3 cut(s) 178, 200, 390
MseI TTAA 2 cut(s) 164, 450
MslI CAYNNNNRTG 1 cut(s) 310
MspR9I CCNGG 2 cut(s) 351, 464
MunI CAATTG 1 cut(s) 126
Mva1269I GAATGC 2 cut(s) 187, 485
MvaI CCWGG 2 cut(s) 351, 464
MwoI GCNNNNNNNGC 2 cut(s) 275, 397
NdeII GATC 2 cut(s) 373, 426
NlaIII CATG 2 cut(s) 121, 427
PasI CCCWGGG 1 cut(s) 463
PctI GAATGC 2 cut(s) 187, 485
PfeI GAWTC 2 cut(s) 61, 122
PflMI CCANNNNNTGG 1 cut(s) 57
PkrI GCNGC 1 cut(s) 317
PleI GAGTC 1 cut(s) 462
PpsI GAGTC 1 cut(s) 462
Psp6I CCWGG 2 cut(s) 349, 462
PspGI CCWGG 2 cut(s) 349, 462
PsuI RGATCY 1 cut(s) 373
RseI CAYNNNNRTG 1 cut(s) 310
SaqAI TTAA 2 cut(s) 164, 450
SatI GCNGC 1 cut(s) 316
Sau3AI GATC 2 cut(s) 373, 426
SchI GAGTC 1 cut(s) 462
ScrFI CCNGG 2 cut(s) 351, 464
SetI ASST 5 cut(s) 47, 170, 238, 320, 352
SexAI ACCWGGT 1 cut(s) 349
SfcI CTRYAG 1 cut(s) 253
SmiMI CAYNNNNRTG 1 cut(s) 310
Sse9I AATT 3 cut(s) 5, 126, 433
SspMI CTAG 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 349, 462
TaqI TCGA 2 cut(s) 21, 378
TasI AATT 3 cut(s) 5, 126, 433
TfiI GAWTC 2 cut(s) 61, 122
Tru1I TTAA 2 cut(s) 164, 450
Tru9I TTAA 2 cut(s) 164, 450
TscAI CASTG 1 cut(s) 250
TseI GCWGC 1 cut(s) 315
TspDTI ATGAA 1 cut(s) 372
TspRI CASTG 1 cut(s) 250
Van91I CCANNNNNTGG 1 cut(s) 57
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.