Rorug04G0039200

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
6017758 .. 6018035
278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0039200.1

Sequence Viewer

Length: 219 bp
ATGGCTAATGACAAAGAAGAGAAACTCTACTTCATATATTTTGAGTATGGATCATACAATGGGCATACAATTACAGAGGCTTTGACATTGGGAATCACTTCAATGAATGTGCAGGCTATGATTGTAACTACAGCTTATACCCAAGAGGTATCGAACAAAGATCTTGAAGCTCTCTATGTTGAGACCAATACATATATGTTAGTTTCGCACTTGTATTGA

Protein Analysis

72

Amino Acids

8.29

Weight (kDa)

4.47

Isoelectric Point (pI)

15.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 58
AgsI TTSAA 2 cut(s) 102, 167
AluBI AGCT 2 cut(s) 134, 170
AluI AGCT 2 cut(s) 134, 170
Alw26I GTCTC 1 cut(s) 176
AlwI GGATC 1 cut(s) 58
Asp700I GAANNNNTTC 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 176
BfmI CTRYAG 1 cut(s) 129
BglII AGATCT 1 cut(s) 160
BsaI GGTCTC 1 cut(s) 176
BsgI GTGCAG 1 cut(s) 131
BsmAI GTCTC 1 cut(s) 176
Bso31I GGTCTC 1 cut(s) 176
Bsp143I GATC 2 cut(s) 50, 160
BspPI GGATC 1 cut(s) 58
BspTNI GGTCTC 1 cut(s) 176
BssMI GATC 2 cut(s) 50, 160
Bst6I CTCTTC 1 cut(s) 12
BstC8I GCNNGC 1 cut(s) 114
BstKTI GATC 2 cut(s) 53, 163
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 2 cut(s) 50, 160
BstSFI CTRYAG 1 cut(s) 129
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 114
CviJI RGCY 5 cut(s) 5, 80, 116, 134, 170
CviKI_1 RGCY 5 cut(s) 5, 80, 116, 134, 170
DpnI GATC 2 cut(s) 52, 162
DpnII GATC 2 cut(s) 50, 160
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco31I GGTCTC 1 cut(s) 176
HinfI GANTC 1 cut(s) 93
Hpy188III TCNNGA 1 cut(s) 164
HpyCH4V TGCA 1 cut(s) 112
Kzo9I GATC 2 cut(s) 50, 160
LpnPI CCDG 1 cut(s) 98
MaeIII GTNAC 1 cut(s) 124
MalI GATC 2 cut(s) 52, 162
MboI GATC 2 cut(s) 50, 160
MboII GAAGA 1 cut(s) 29
MflI RGATCY 1 cut(s) 160
MluCI AATT 1 cut(s) 69
MnlI CCTC 2 cut(s) 70, 139
MroXI GAANNNNTTC 1 cut(s) 97
MslI CAYNNNNRTG 1 cut(s) 101
NdeII GATC 2 cut(s) 50, 160
PdmI GAANNNNTTC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 93
PsuI RGATCY 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 101
Sau3AI GATC 2 cut(s) 50, 160
SetI ASST 3 cut(s) 136, 150, 172
SfcI CTRYAG 1 cut(s) 129
SgeI CNNG 3 cut(s) 125, 155, 176
SmiMI CAYNNNNRTG 1 cut(s) 101
Sse9I AATT 1 cut(s) 69
TaqI TCGA 1 cut(s) 152
TasI AATT 1 cut(s) 69
TfiI GAWTC 1 cut(s) 93
TspDTI ATGAA 2 cut(s) 22, 119
XmnI GAANNNNTTC 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.