AT4G25810

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
13128394 .. 13129927
1534 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G25810.1

Sequence Viewer

Length: 861 bp
ATGGCGATGATCAGTTACTCCACCATTGTGGTTGCTCTGCTTGCTTCTTTTATGATTTGCTCTGTTTCCGCCAATTTTCAACGAGACGTAGAGATAACTTGGGGAGACGGACGTGGACAGATCACAAACAACGGCGATCTTCTTACACTCTCTCTCGACAAAGCTTCAGGCTCAGGATTCCAATCCAAGAACGAATATTTGTTCGGTAAAATCGACATGCAGATCAAACTCGTTGCCGGAAACTCCGCTGGAACTGTCACCGCTTACTATTTGAAATCCCCTGGATCTACATGGGACGAGATTGACTTTGAGTTCTTGGGAAACCTAAGTGGTGATCCTTACACACTTCATACTAATGTCTTTACGCAAGGAAAAGGCGATAGAGAACAACAATTCAAACTCTGGTTCGATCCCACTAGTGATTTCCACACTTACTCTATCCTCTGGAACCCACAACGCATCATATTCTCCGTGGATGGAACTCCCATAAGAGAATTCAAGAACATGGAATCTCAAGGAACTCTGTTTCCTAAGAACCAGCCAATGAGAATGTACTCTAGTCTATGGAACGCTGAAGAATGGGCCACAAGGGGTGGTCTCGTCAAAACCGACTGGTCTAAAGCTCCCTTCACTGCTTCCTACCGCGGCTTCAACGAAGAAGCTTGCGTCGTGATCAACGGCCAGTCTTCATGCCCTAACGTGTCAGGACAAGGGAGTACTGGTTCGTGGTTGTCTCAGGAGCTAGACTCGACGGGTCAAGAACAGATGAGATGGGTACAGAATAACTACATGATTTACAATTACTGTACGGACGCTAAAAGGTTCCCTCAAGGTCTTCCACGCGAGTGCTTAGCTGCGTAA

Protein Analysis

286

Amino Acids

32.06

Weight (kDa)

5.05

Isoelectric Point (pI)

31.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 27 - 207 9.3e-67 Glycosyl hydrolases family 16
XET_C PF06955 239 - 283 1.5e-22 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 645, 843
AciI CCGC 5 cut(s) 69, 246, 261, 643, 645
AclWI GGATC 3 cut(s) 292, 329, 404
AcoI YGGCCR 1 cut(s) 679
AcsI RAATTY 1 cut(s) 494
AcuI CTGAAG 2 cut(s) 150, 594
AfaI GTAC 4 cut(s) 554, 718, 777, 808
AflIII ACRYGT 1 cut(s) 699
AgsI TTSAA 5 cut(s) 80, 274, 397, 499, 652
AhlI ACTAGT 1 cut(s) 416
AjiI CACGTC 1 cut(s) 113
AjnI CCWGG 1 cut(s) 280
AleI CACNNNNGTG 2 cut(s) 26, 844
AloI GAACNNNNNNTCC 4 cut(s) 511, 543, 706, 738
AluBI AGCT 5 cut(s) 164, 623, 662, 742, 854
AluI AGCT 5 cut(s) 164, 623, 662, 742, 854
Alw26I GTCTC 4 cut(s) 78, 99, 602, 738
AlwI GGATC 3 cut(s) 292, 329, 404
AoxI GGCC 2 cut(s) 582, 679
ApeKI GCWGC 1 cut(s) 854
ApoI RAATTY 1 cut(s) 494
AspS9I GGNCC 1 cut(s) 582
AsuHPI GGTGA 2 cut(s) 250, 344
BbsI GAAGAC 2 cut(s) 678, 827
BbvI GCAGC 1 cut(s) 841
BccI CCATC 2 cut(s) 470, 765
BceAI ACGGC 2 cut(s) 148, 694
BciT130I CCWGG 1 cut(s) 282
BclI TGATCA 2 cut(s) 9, 672
BcoDI GTCTC 4 cut(s) 78, 99, 602, 738
BcuI ACTAGT 1 cut(s) 416
BfaI CTAG 3 cut(s) 417, 558, 743
BisI GCNGC 2 cut(s) 646, 855
BlpI GCTNAGC 1 cut(s) 850
BlsI GCNGC 2 cut(s) 647, 856
BmcAI AGTACT 1 cut(s) 718
Bme1390I CCNGG 1 cut(s) 282
BmgBI CACGTC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 582
BmiI GGNNCC 2 cut(s) 449, 824
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 1 cut(s) 468
BpiI GAAGAC 2 cut(s) 678, 827
BplI GAGNNNNNCTC 2 cut(s) 731, 763
Bpu10I CCTNAGC 1 cut(s) 172
Bpu1102I GCTNAGC 1 cut(s) 850
BpuEI CTTGAG 2 cut(s) 498, 813
BsaBI GATNNNNATC 1 cut(s) 181
BsaI GGTCTC 1 cut(s) 602
BsaJI CCNNGG 3 cut(s) 280, 471, 643
BsaXI ACNNNNNCTCC 2 cut(s) 706, 736
Bse1I ACTGG 3 cut(s) 617, 682, 724
Bse8I GATNNNNATC 1 cut(s) 181
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 3 cut(s) 280, 471, 643
BseGI GGATG 1 cut(s) 481
BseJI GATNNNNATC 1 cut(s) 181
BseMII CTCAG 2 cut(s) 186, 749
BseNI ACTGG 3 cut(s) 617, 682, 724
BseXI GCAGC 1 cut(s) 841
Bsh1236I CGCG 2 cut(s) 645, 843
BshFI GGCC 2 cut(s) 584, 681
BsiSI CCGG 1 cut(s) 237
BslFI GGGAC 1 cut(s) 308
BsmAI GTCTC 4 cut(s) 78, 99, 602, 738
BsmBI CGTCTC 2 cut(s) 78, 99
BsmFI GGGAC 1 cut(s) 308
BsnI GGCC 2 cut(s) 584, 681
Bso31I GGTCTC 1 cut(s) 602
Bsp143I GATC 8 cut(s) 9, 120, 136, 222, 284, 334, 409, 672
Bsp1720I GCTNAGC 1 cut(s) 850
BspACI CCGC 5 cut(s) 69, 246, 261, 643, 645
BspANI GGCC 2 cut(s) 584, 681
BspCNI CTCAG 2 cut(s) 185, 748
BspFNI CGCG 2 cut(s) 645, 843
BspLI GGNNCC 2 cut(s) 449, 824
BspPI GGATC 3 cut(s) 292, 329, 404
BspTNI GGTCTC 1 cut(s) 602
BsrI ACTGG 3 cut(s) 617, 682, 724
BssECI CCNNGG 3 cut(s) 280, 471, 643
BssMI GATC 8 cut(s) 9, 120, 136, 222, 284, 334, 409, 672
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 2 cut(s) 256, 806
BstC8I GCNNGC 2 cut(s) 42, 664
BstDEI CTNAG 5 cut(s) 172, 326, 531, 735, 850
BstDSI CCRYGG 2 cut(s) 471, 643
BstF5I GGATG 1 cut(s) 481
BstFNI CGCG 2 cut(s) 645, 843
BstKTI GATC 8 cut(s) 12, 123, 139, 225, 287, 337, 412, 675
BstMAI GTCTC 4 cut(s) 78, 99, 602, 738
BstMBI GATC 8 cut(s) 9, 120, 136, 222, 284, 334, 409, 672
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 1 cut(s) 282
BstNSI RCATGY 1 cut(s) 220
BstSCI CCNGG 1 cut(s) 280
BstUI CGCG 2 cut(s) 645, 843
BstV1I GCAGC 1 cut(s) 841
BstV2I GAAGAC 2 cut(s) 678, 827
BstX2I RGATCY 1 cut(s) 284
BstXI CCANNNNNNTGG 1 cut(s) 28
BstYI RGATCY 1 cut(s) 284
BsuRI GGCC 2 cut(s) 584, 681
BtgI CCRYGG 2 cut(s) 471, 643
BtgZI GCGATG 1 cut(s) 20
BtrI CACGTC 1 cut(s) 113
BtsCI GGATG 1 cut(s) 481
BtsI GCAGTG 1 cut(s) 630
BtsIMutI CAGTG 1 cut(s) 630
Cac8I GCNNGC 2 cut(s) 42, 664
Cfr13I GGNCC 1 cut(s) 582
Cfr42I CCGCGG 1 cut(s) 646
CseI GACGC 2 cut(s) 655, 821
Csp6I GTAC 4 cut(s) 553, 717, 776, 807
CviAII CATG 5 cut(s) 217, 291, 505, 690, 790
CviQI GTAC 4 cut(s) 553, 717, 776, 807
DdeI CTNAG 5 cut(s) 172, 326, 531, 735, 850
DpnI GATC 8 cut(s) 11, 122, 138, 224, 286, 336, 411, 674
DpnII GATC 8 cut(s) 9, 120, 136, 222, 284, 334, 409, 672
EaeI YGGCCR 1 cut(s) 679
EciI GGCGGA 1 cut(s) 58
Eco31I GGTCTC 1 cut(s) 602
Eco57I CTGAAG 2 cut(s) 150, 594
EcoRI GAATTC 1 cut(s) 494
EcoRII CCWGG 1 cut(s) 280
Esp3I CGTCTC 2 cut(s) 78, 99
FaeI CATG 5 cut(s) 220, 294, 508, 693, 793
FaqI GGGAC 1 cut(s) 308
FatI CATG 5 cut(s) 216, 290, 504, 689, 789
FbaI TGATCA 2 cut(s) 9, 672
Fnu4HI GCNGC 2 cut(s) 646, 855
FokI GGATG 1 cut(s) 488
Fsp4HI GCNGC 2 cut(s) 646, 855
FspBI CTAG 3 cut(s) 417, 558, 743
GluI GCNGC 2 cut(s) 646, 855
HaeIII GGCC 2 cut(s) 584, 681
HapII CCGG 1 cut(s) 237
HgaI GACGC 2 cut(s) 655, 821
Hin1II CATG 5 cut(s) 220, 294, 508, 693, 793
HindIII AAGCTT 2 cut(s) 162, 660
HinfI GANTC 3 cut(s) 177, 509, 746
HpaII CCGG 1 cut(s) 237
HphI GGTGA 2 cut(s) 250, 344
Hpy166II GTNNAC 1 cut(s) 116
Hpy188III TCNNGA 8 cut(s) 155, 174, 445, 499, 670, 705, 737, 758
Hpy8I GTNNAC 1 cut(s) 116
Hpy99I CGWCG 2 cut(s) 671, 754
HpyAV CCTTC 1 cut(s) 637
HpyCH4III ACNGT 2 cut(s) 256, 806
HpyCH4IV ACGT 3 cut(s) 87, 112, 699
HpyCH4V TGCA 1 cut(s) 220
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 5 cut(s) 172, 326, 531, 735, 850
HpySE526I ACGT 3 cut(s) 87, 112, 699
Hsp92II CATG 5 cut(s) 220, 294, 508, 693, 793
Ksp22I TGATCA 2 cut(s) 9, 672
KspI CCGCGG 1 cut(s) 646
Kzo9I GATC 8 cut(s) 9, 120, 136, 222, 284, 334, 409, 672
LmnI GCTCC 2 cut(s) 628, 739
Lsp1109I GCAGC 1 cut(s) 841
LweI GCATC 1 cut(s) 468
MaeI CTAG 3 cut(s) 417, 558, 743
MaeII ACGT 3 cut(s) 87, 112, 699
MaeIII GTNAC 2 cut(s) 14, 256
MalI GATC 8 cut(s) 11, 122, 138, 224, 286, 336, 411, 674
MboI GATC 8 cut(s) 9, 120, 136, 222, 284, 334, 409, 672
MboII GAAGA 5 cut(s) 131, 587, 668, 678, 827
MflI RGATCY 1 cut(s) 284
MluCI AATT 4 cut(s) 73, 392, 494, 799
MlyI GAGTC 1 cut(s) 740
MnlI CCTC 2 cut(s) 452, 837
MslI CAYNNNNRTG 3 cut(s) 26, 354, 844
MspA1I CMGCKG 2 cut(s) 248, 645
MspI CCGG 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 282
MvnI CGCG 2 cut(s) 645, 843
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeII GATC 8 cut(s) 9, 120, 136, 222, 284, 334, 409, 672
NlaIII CATG 5 cut(s) 220, 294, 508, 693, 793
NlaIV GGNNCC 2 cut(s) 449, 824
NmuCI GTSAC 1 cut(s) 256
NspI RCATGY 1 cut(s) 220
OliI CACNNNNGTG 2 cut(s) 26, 844
PcsI WCGNNNNNNNCGW 2 cut(s) 210, 606
PfeI GAWTC 2 cut(s) 177, 509
PkrI GCNGC 2 cut(s) 647, 856
PleI GAGTC 1 cut(s) 740
PpsI GAGTC 1 cut(s) 740
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 2 cut(s) 449, 824
PspPI GGNCC 1 cut(s) 582
PsuI RGATCY 1 cut(s) 284
RsaI GTAC 4 cut(s) 554, 718, 777, 808
RsaNI GTAC 4 cut(s) 553, 717, 776, 807
RseI CAYNNNNRTG 3 cut(s) 26, 354, 844
SacII CCGCGG 1 cut(s) 646
SatI GCNGC 2 cut(s) 646, 855
Sau3AI GATC 8 cut(s) 9, 120, 136, 222, 284, 334, 409, 672
Sau96I GGNCC 1 cut(s) 582
ScaI AGTACT 1 cut(s) 718
SchI GAGTC 1 cut(s) 740
ScrFI CCNGG 1 cut(s) 282
SfaNI GCATC 1 cut(s) 468
Sfr303I CCGCGG 1 cut(s) 646
SgrBI CCGCGG 1 cut(s) 646
SmiMI CAYNNNNRTG 3 cut(s) 26, 354, 844
SmlI CTYRAG 2 cut(s) 513, 828
SmoI CTYRAG 2 cut(s) 513, 828
SpeI ACTAGT 1 cut(s) 416
Sse9I AATT 4 cut(s) 73, 392, 494, 799
SsiI CCGC 5 cut(s) 69, 246, 261, 643, 645
SspI AATATT 1 cut(s) 197
SspMI CTAG 3 cut(s) 417, 558, 743
StyD4I CCNGG 1 cut(s) 280
TaaI ACNGT 2 cut(s) 256, 806
TaiI ACGT 3 cut(s) 90, 115, 702
TaqI TCGA 4 cut(s) 156, 213, 408, 749
TasI AATT 4 cut(s) 73, 392, 494, 799
TatI WGTACW 2 cut(s) 552, 716
TauI GCSGC 1 cut(s) 648
TfiI GAWTC 2 cut(s) 177, 509
TscAI CASTG 1 cut(s) 637
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 1 cut(s) 854
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 2 cut(s) 338, 678
TspGWI ACGGA 3 cut(s) 123, 460, 824
TspRI CASTG 1 cut(s) 637
XapI RAATTY 1 cut(s) 494
XceI RCATGY 1 cut(s) 220
XspI CTAG 3 cut(s) 417, 558, 743
ZrmI AGTACT 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.