Rh4BG109800

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000460
Physical Location & Seq
Forward (+)
18577759 .. 18580112
2354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG109800.1

Sequence Viewer

Length: 600 bp
ATGCAGTTAAAATCAGAAGGGTCTACAAGGGATGAGATAGACTTTGAGTTCTTGGGAAACCTGAGTGGCAACCCTTACACTCTTCACACCAATGTCTTCAGCCAAGGCAAAGGAAACAGAGAGCAGCAATGCCATCTCTGGTTCGACCCAACTGCTGATTTCCACACCTATTCCATTCTCTGGAATCCACAGCGCATTGTTTTCTCTGTTGATGGTACCCCCATTAGAGAGTTCAAGAACCAAGAATCAAATGGTGTTCCATTCCCAAAGAGCCAAGCAATGAGAATACACTCGAGCCTCTGGAATGCTGATGATTGGGCAACAATGGGAGGACGCGTAAAGACGGATTGGAATGCAGCTCCGTTTACTGCCTCTTACAGGAATTTCAATGCTGAAGCTTGCATTTGGGCTTCTGGATCATCTTCTTGCGGTTCAAGCAGTGCCCCTGCTTCGACTAATGGAGATTGGCTTTCGCAAGAATTGGACACTGCTAGTTATGAAAAGCTGAGTTGGGTGCAGAAAAACTACATGATCTACAATTACTGCACAGATGTCAGCAGATTCCCTCAGGGTCTCCCAGTTGAATGCAGCACTTCATAG

Protein Analysis

199

Amino Acids

22.4

Weight (kDa)

5.14

Isoelectric Point (pI)

40.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 3 - 118 6.5e-46 Glycosyl hydrolases family 16
XET_C PF06955 152 - 196 2.2e-19 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 215
AccB1I GGYRCC 1 cut(s) 215
AccB7I CCANNNNNTGG 1 cut(s) 180
AccI GTMKAC 1 cut(s) 23
AccII CGCG 1 cut(s) 336
AciI CCGC 1 cut(s) 429
AclWI GGATC 1 cut(s) 424
AcsI RAATTY 1 cut(s) 382
AcuI CTGAAG 2 cut(s) 82, 414
AfaI GTAC 1 cut(s) 217
AfiI CCNNNNNNNGG 2 cut(s) 180, 378
AflIII ACRYGT 1 cut(s) 334
AgsI TTSAA 4 cut(s) 235, 388, 435, 584
AluBI AGCT 3 cut(s) 359, 398, 505
AluI AGCT 3 cut(s) 359, 398, 505
Alw26I GTCTC 1 cut(s) 578
AlwI GGATC 1 cut(s) 424
Ama87I CYCGRG 1 cut(s) 292
ApeKI GCWGC 3 cut(s) 124, 356, 588
ApoI RAATTY 1 cut(s) 382
Asp718I GGTACC 1 cut(s) 215
AspLEI GCGC 1 cut(s) 195
AvaI CYCGRG 1 cut(s) 292
AxyI CCTNAGG 1 cut(s) 567
BaeGI GKGCMC 1 cut(s) 445
BanI GGYRCC 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 88
BbvI GCAGC 2 cut(s) 136, 368
BccI CCATC 2 cut(s) 141, 206
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BcoDI GTCTC 1 cut(s) 578
BfaI CTAG 1 cut(s) 492
BisI GCNGC 3 cut(s) 125, 357, 589
BlsI GCNGC 3 cut(s) 126, 358, 590
BmeT110I CYCGRG 1 cut(s) 292
BmiI GGNNCC 1 cut(s) 217
BmrI ACTGGG 1 cut(s) 572
BmuI ACTGGG 1 cut(s) 572
BpiI GAAGAC 1 cut(s) 88
BsaI GGTCTC 1 cut(s) 578
BsaJI CCNNGG 1 cut(s) 103
BsaXI ACNNNNNCTCC 2 cut(s) 321, 351
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 378
Bse1I ACTGG 1 cut(s) 578
Bse21I CCTNAGG 1 cut(s) 567
Bse3DI GCAATG 2 cut(s) 134, 285
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 1 cut(s) 37
BseLI CCNNNNNNNGG 2 cut(s) 180, 378
BseMI GCAATG 2 cut(s) 134, 285
BseMII CTCAG 3 cut(s) 53, 497, 581
BseNI ACTGG 1 cut(s) 578
BseSI GKGCMC 1 cut(s) 445
BseXI GCAGC 2 cut(s) 136, 368
BsgI GTGCAG 2 cut(s) 529, 536
Bsh1236I CGCG 1 cut(s) 336
BshNI GGYRCC 1 cut(s) 215
BsiHKCI CYCGRG 1 cut(s) 292
BslI CCNNNNNNNGG 2 cut(s) 180, 378
BsmAI GTCTC 1 cut(s) 578
BsmI GAATGC 3 cut(s) 310, 358, 590
Bso31I GGTCTC 1 cut(s) 578
BsoBI CYCGRG 1 cut(s) 292
Bsp1286I GDGCHC 1 cut(s) 445
Bsp143I GATC 2 cut(s) 416, 531
BspACI CCGC 1 cut(s) 429
BspCNI CTCAG 3 cut(s) 54, 498, 580
BspFNI CGCG 1 cut(s) 336
BspLI GGNNCC 1 cut(s) 217
BspPI GGATC 1 cut(s) 424
BspT107I GGYRCC 1 cut(s) 215
BspTNI GGTCTC 1 cut(s) 578
BsrDI GCAATG 2 cut(s) 134, 285
BsrI ACTGG 1 cut(s) 578
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 2 cut(s) 416, 531
BssT1I CCWWGG 1 cut(s) 103
Bst6I CTCTTC 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 400
BstDEI CTNAG 3 cut(s) 62, 506, 567
BstENI CCTNNNNNAGG 1 cut(s) 376
BstF5I GGATG 1 cut(s) 37
BstFNI CGCG 1 cut(s) 336
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 2 cut(s) 419, 534
BstMAI GTCTC 1 cut(s) 578
BstMBI GATC 2 cut(s) 416, 531
BstMWI GCNNNNNNNGC 1 cut(s) 435
BstSLI GKGCMC 1 cut(s) 445
BstUI CGCG 1 cut(s) 336
BstV1I GCAGC 2 cut(s) 136, 368
BstV2I GAAGAC 1 cut(s) 88
Bsu36I CCTNAGG 1 cut(s) 567
BtsCI GGATG 1 cut(s) 37
BtsI GCAGTG 2 cut(s) 445, 486
BtsIMutI CAGTG 2 cut(s) 445, 486
Cac8I GCNNGC 1 cut(s) 400
CfoI GCGC 1 cut(s) 195
CseI GACGC 1 cut(s) 342
Csp6I GTAC 1 cut(s) 216
CviAII CATG 1 cut(s) 529
CviJI RGCY 8 cut(s) 102, 273, 297, 359, 398, 410, 469, 505
CviKI_1 RGCY 8 cut(s) 102, 273, 297, 359, 398, 410, 469, 505
CviQI GTAC 1 cut(s) 216
DdeI CTNAG 3 cut(s) 62, 506, 567
DpnI GATC 2 cut(s) 418, 533
DpnII GATC 2 cut(s) 416, 531
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 103
Eco31I GGTCTC 1 cut(s) 578
Eco57I CTGAAG 2 cut(s) 82, 414
Eco81I CCTNAGG 1 cut(s) 567
Eco88I CYCGRG 1 cut(s) 292
EcoNI CCTNNNNNAGG 1 cut(s) 376
EcoT14I CCWWGG 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 103
FaeI CATG 1 cut(s) 532
FaiI YATR 3 cut(s) 498, 530, 598
FatI CATG 1 cut(s) 528
FblI GTMKAC 1 cut(s) 23
Fnu4HI GCNGC 3 cut(s) 125, 357, 589
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 3 cut(s) 125, 357, 589
FspBI CTAG 1 cut(s) 492
GlaI GCGC 1 cut(s) 194
GluI GCNGC 3 cut(s) 125, 357, 589
HgaI GACGC 1 cut(s) 342
HhaI GCGC 1 cut(s) 195
Hin1II CATG 1 cut(s) 532
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HindIII AAGCTT 1 cut(s) 396
HinfI GANTC 3 cut(s) 184, 245, 561
Hpy166II GTNNAC 2 cut(s) 24, 366
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 4 cut(s) 181, 235, 301, 414
Hpy8I GTNNAC 2 cut(s) 24, 366
HpyAV CCTTC 1 cut(s) 11
HpyCH4V TGCA 6 cut(s) 4, 356, 402, 517, 546, 588
HpyF10VI GCNNNNNNNGC 1 cut(s) 435
HpyF3I CTNAG 3 cut(s) 62, 506, 567
Hsp92II CATG 1 cut(s) 532
HspAI GCGC 1 cut(s) 193
KpnI GGTACC 1 cut(s) 219
Kzo9I GATC 2 cut(s) 416, 531
LmnI GCTCC 1 cut(s) 364
LpnPI CCDG 9 cut(s) 74, 124, 166, 286, 364, 399, 459, 554, 591
Lsp1109I GCAGC 2 cut(s) 136, 368
MaeI CTAG 1 cut(s) 492
MalI GATC 2 cut(s) 418, 533
MboI GATC 2 cut(s) 416, 531
MboII GAAGA 3 cut(s) 74, 88, 414
MhlI GDGCHC 1 cut(s) 445
MluCI AATT 3 cut(s) 382, 479, 538
MluI ACGCGT 1 cut(s) 334
MnlI CCTC 4 cut(s) 308, 323, 382, 576
MseI TTAA 1 cut(s) 8
MslI CAYNNNNRTG 1 cut(s) 90
Mva1269I GAATGC 3 cut(s) 310, 358, 590
MvnI CGCG 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 435
NdeII GATC 2 cut(s) 416, 531
NlaIII CATG 1 cut(s) 532
NlaIV GGNNCC 1 cut(s) 217
PaeR7I CTCGAG 1 cut(s) 292
PctI GAATGC 3 cut(s) 310, 358, 590
PfeI GAWTC 3 cut(s) 184, 245, 561
PflMI CCANNNNNTGG 1 cut(s) 180
PkrI GCNGC 3 cut(s) 126, 358, 590
PspN4I GGNNCC 1 cut(s) 217
PspXI VCTCGAGB 1 cut(s) 292
RsaI GTAC 1 cut(s) 217
RsaNI GTAC 1 cut(s) 216
RseI CAYNNNNRTG 1 cut(s) 90
SaqAI TTAA 1 cut(s) 8
SatI GCNGC 3 cut(s) 125, 357, 589
Sau3AI GATC 2 cut(s) 416, 531
SduI GDGCHC 1 cut(s) 445
SetI ASST 5 cut(s) 63, 170, 361, 400, 507
Sfr274I CTCGAG 1 cut(s) 292
SlaI CTCGAG 1 cut(s) 292
SmiMI CAYNNNNRTG 1 cut(s) 90
SmlI CTYRAG 1 cut(s) 292
SmoI CTYRAG 1 cut(s) 292
Sse9I AATT 3 cut(s) 382, 479, 538
SsiI CCGC 1 cut(s) 429
SspMI CTAG 1 cut(s) 492
StyI CCWWGG 1 cut(s) 103
TaqI TCGA 3 cut(s) 144, 293, 452
TasI AATT 3 cut(s) 382, 479, 538
TfiI GAWTC 3 cut(s) 184, 245, 561
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TscAI CASTG 2 cut(s) 445, 493
TseI GCWGC 3 cut(s) 124, 356, 588
TspDTI ATGAA 2 cut(s) 513, 585
TspGWI ACGGA 2 cut(s) 351, 359
TspRI CASTG 2 cut(s) 445, 493
Van91I CCANNNNNTGG 1 cut(s) 180
XagI CCTNNNNNAGG 1 cut(s) 376
XapI RAATTY 1 cut(s) 382
XcmI CCANNNNNNNNNTGG 1 cut(s) 248
XhoI CTCGAG 1 cut(s) 292
XmiI GTMKAC 1 cut(s) 23
XspI CTAG 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.