Rmu_sc0008058.1_g000029

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008058.1
OG0000460
Physical Location & Seq
Forward (+)
91973 .. 93996
2024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008058.1_g000029.1.cds

Sequence Viewer

Length: 954 bp
atgcccacgtgtaaatacccattcaccccttcccttcatccccttaccgactcgtatgtgtcagttccaaagtttctttacaaaacagcagcaatggctagcagctactgcctggtgtttttgctcactattatcattggttctttgatggttgttatctcttctgctagtaatttcaatcaagattttgagattacatggggtgagggccgagctaagatactaaacaacaaccagcttcttatactttacctcgacagaatctcagggtcaggattccagtccaagaatgagtatctatttggtaagattgatatgcaactcaagcttgtcccaggaaactccgctggcactgtcaccgcctattatttgtcctcaaaagggtcagcatgggatgagatagatttcgagttcttgggtaacttgagtggtgatccgtacaccgtccacaccaatgtgtatagccaaggcaagggcgatagagagcaacagttccatctctggtttgacccgaccaccgactttcacacatattccattctttggaaccctcagcgcgttgtattctatgttgatggcaccccaataagagagttcaagaacttggagtcaattggtgttccattcccaaaggaccagcccatgagattacactctagcctttggagtgctgatgactgggctacaaggggtggcctagttaaaacagactggaccaaagctcctttcattgcttcttataggaacttcaatgccgatgcttgtatatggtcctctggaacatcttcttgcacttcaaaatccccatcgtctggtggatggctctcacaagagttgggtttagcaagtaagcaaaaattaaaatgggtgcaagagaagtttatgatctacaattactgcagagacacaaagaggtttccccaaggcttccctcaagaatgcagagtgtcctaa

Protein Analysis

317

Amino Acids

35.89

Weight (kDa)

8.11

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 578
AccB7I CCANNNNNTGG 2 cut(s) 543, 812
AccII CGCG 1 cut(s) 558
AciI CCGC 2 cut(s) 345, 360
AclWI GGATC 1 cut(s) 428
AcvI CACGTG 1 cut(s) 9
AfaI GTAC 1 cut(s) 440
AfiI CCNNNNNNNGG 4 cut(s) 381, 472, 543, 812
AflIII ACRYGT 1 cut(s) 8
AgsI TTSAA 4 cut(s) 178, 598, 751, 798
AjnI CCWGG 2 cut(s) 111, 334
AjuI GAANNNNNNNTTGG 2 cut(s) 710, 742
AleI CACNNNNGTG 1 cut(s) 455
AluBI AGCT 5 cut(s) 105, 215, 238, 328, 722
AluI AGCT 5 cut(s) 105, 215, 238, 328, 722
Alw26I GTCTC 1 cut(s) 897
AlwI GGATC 1 cut(s) 428
AlwNI CAGNNNCTG 1 cut(s) 108
AoxI GGCC 2 cut(s) 208, 694
ApeKI GCWGC 2 cut(s) 89, 102
Asp700I GAANNNNTTC 1 cut(s) 784
AspLEI GCGC 1 cut(s) 558
AspS9I GGNCC 4 cut(s) 208, 634, 714, 771
AsuHPI GGTGA 4 cut(s) 16, 215, 349, 443
AsuNHI GCTAGC 1 cut(s) 98
AvaII GGWCC 3 cut(s) 634, 714, 771
BanI GGYRCC 1 cut(s) 578
BbrPI CACGTG 1 cut(s) 9
BbvCI CCTCAGC 1 cut(s) 552
BbvI GCAGC 2 cut(s) 101, 114
BccI CCATC 5 cut(s) 142, 504, 569, 813, 814
BciT130I CCWGG 2 cut(s) 113, 336
BcoDI GTCTC 1 cut(s) 897
BfaI CTAG 4 cut(s) 99, 168, 657, 698
BfmI CTRYAG 1 cut(s) 898
BisI GCNGC 2 cut(s) 90, 103
BlsI GCNGC 2 cut(s) 91, 104
Bme1390I CCNGG 2 cut(s) 113, 336
Bme18I GGWCC 3 cut(s) 634, 714, 771
BmgT120I GGNCC 4 cut(s) 208, 634, 714, 771
BmiI GGNNCC 2 cut(s) 548, 580
BmrFI CCNGG 2 cut(s) 113, 336
BmrI ACTGGG 1 cut(s) 688
BmsI GCATC 1 cut(s) 748
BmtI GCTAGC 1 cut(s) 102
BmuI ACTGGG 1 cut(s) 688
Bpu10I CCTNAGC 1 cut(s) 552
BpuEI CTTGAG 3 cut(s) 308, 445, 918
BsaAI YACGTR 1 cut(s) 9
BsaJI CCNNGG 3 cut(s) 334, 466, 922
BsaXI ACNNNNNCTCC 2 cut(s) 706, 736
Bsc4I CCNNNNNNNGG 4 cut(s) 381, 472, 543, 812
Bse1I ACTGG 3 cut(s) 280, 683, 716
Bse3DI GCAATG 2 cut(s) 99, 729
BseBI CCWGG 2 cut(s) 113, 336
BseDI CCNNGG 3 cut(s) 334, 466, 922
BseGI GGATG 3 cut(s) 37, 400, 824
BseLI CCNNNNNNNGG 4 cut(s) 381, 472, 543, 812
BseMI GCAATG 2 cut(s) 99, 729
BseMII CTCAG 2 cut(s) 279, 566
BseNI ACTGG 3 cut(s) 280, 683, 716
BseXI GCAGC 2 cut(s) 101, 114
Bsh1236I CGCG 1 cut(s) 558
BshFI GGCC 2 cut(s) 210, 696
BshNI GGYRCC 1 cut(s) 578
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 4 cut(s) 381, 472, 543, 812
BsmAI GTCTC 1 cut(s) 897
BsmFI GGGAC 1 cut(s) 317
BsmI GAATGC 1 cut(s) 944
BsnI GGCC 2 cut(s) 210, 696
Bsp143I GATC 2 cut(s) 433, 885
BspACI CCGC 2 cut(s) 345, 360
BspANI GGCC 2 cut(s) 210, 696
BspCNI CTCAG 2 cut(s) 278, 565
BspFNI CGCG 1 cut(s) 558
BspLI GGNNCC 2 cut(s) 548, 580
BspMAI CTGCAG 1 cut(s) 902
BspOI GCTAGC 1 cut(s) 102
BspPI GGATC 1 cut(s) 428
BspT107I GGYRCC 1 cut(s) 578
BsrDI GCAATG 2 cut(s) 99, 729
BsrI ACTGG 3 cut(s) 280, 683, 716
BssECI CCNNGG 3 cut(s) 334, 466, 922
BssMI GATC 2 cut(s) 433, 885
BssT1I CCWWGG 2 cut(s) 466, 922
Bst2UI CCWGG 2 cut(s) 113, 336
Bst4CI ACNGT 3 cut(s) 355, 445, 492
Bst6I CTCTTC 1 cut(s) 166
BstAPI GCANNNNNTGC 1 cut(s) 108
BstBAI YACGTR 1 cut(s) 9
BstC8I GCNNGC 2 cut(s) 100, 349
BstDEI CTNAG 3 cut(s) 216, 265, 552
BstF5I GGATG 3 cut(s) 37, 400, 824
BstFNI CGCG 1 cut(s) 558
BstHHI GCGC 1 cut(s) 558
BstKTI GATC 2 cut(s) 436, 888
BstMAI GTCTC 1 cut(s) 897
BstMBI GATC 2 cut(s) 433, 885
BstMWI GCNNNNNNNGC 3 cut(s) 95, 108, 325
BstNI CCWGG 2 cut(s) 113, 336
BstSCI CCNGG 2 cut(s) 111, 334
BstSFI CTRYAG 1 cut(s) 898
BstUI CGCG 1 cut(s) 558
BstV1I GCAGC 2 cut(s) 101, 114
BsuRI GGCC 2 cut(s) 210, 696
BtsCI GGATG 3 cut(s) 37, 400, 824
BtsIMutI CAGTG 1 cut(s) 351
Cac8I GCNNGC 2 cut(s) 100, 349
CaiI CAGNNNCTG 1 cut(s) 108
CfoI GCGC 1 cut(s) 558
Cfr13I GGNCC 4 cut(s) 208, 634, 714, 771
Csp6I GTAC 1 cut(s) 439
CviAII CATG 3 cut(s) 198, 390, 643
CviQI GTAC 1 cut(s) 439
DdeI CTNAG 3 cut(s) 216, 265, 552
DpnI GATC 2 cut(s) 435, 887
DpnII GATC 2 cut(s) 433, 885
Eam1104I CTCTTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 166
Eco130I CCWWGG 2 cut(s) 466, 922
Eco47I GGWCC 3 cut(s) 634, 714, 771
Eco72I CACGTG 1 cut(s) 9
EcoRII CCWGG 2 cut(s) 111, 334
EcoT14I CCWWGG 2 cut(s) 466, 922
ErhI CCWWGG 2 cut(s) 466, 922
FaeI CATG 3 cut(s) 201, 393, 646
FaqI GGGAC 1 cut(s) 317
FatI CATG 3 cut(s) 197, 389, 642
Fnu4HI GCNGC 2 cut(s) 90, 103
FokI GGATG 3 cut(s) 24, 407, 831
Fsp4HI GCNGC 2 cut(s) 90, 103
FspBI CTAG 4 cut(s) 99, 168, 657, 698
GlaI GCGC 1 cut(s) 557
GluI GCNGC 2 cut(s) 90, 103
HaeIII GGCC 2 cut(s) 210, 696
HhaI GCGC 1 cut(s) 558
Hin1II CATG 3 cut(s) 201, 393, 646
Hin6I GCGC 1 cut(s) 556
HinP1I GCGC 1 cut(s) 556
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 4 cut(s) 50, 261, 276, 608
HphI GGTGA 4 cut(s) 16, 215, 349, 443
Hpy166II GTNNAC 2 cut(s) 441, 448
Hpy188III TCNNGA 5 cut(s) 182, 273, 598, 777, 935
Hpy8I GTNNAC 2 cut(s) 441, 448
HpyAV CCTTC 2 cut(s) 39, 44
HpyCH4III ACNGT 3 cut(s) 355, 445, 492
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 5 cut(s) 319, 792, 871, 900, 942
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 108, 325
HpyF3I CTNAG 3 cut(s) 216, 265, 552
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 3 cut(s) 201, 393, 646
HspAI GCGC 1 cut(s) 556
Kzo9I GATC 2 cut(s) 433, 885
LmnI GCTCC 1 cut(s) 727
Lsp1109I GCAGC 2 cut(s) 101, 114
LweI GCATC 1 cut(s) 748
MaeI CTAG 4 cut(s) 99, 168, 657, 698
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 2 cut(s) 355, 419
MalI GATC 2 cut(s) 435, 887
MboI GATC 2 cut(s) 433, 885
MboII GAAGA 2 cut(s) 153, 777
MfeI CAATTG 1 cut(s) 612
MluCI AATT 4 cut(s) 172, 612, 857, 892
MlyI GAGTC 2 cut(s) 44, 617
MnlI CCTC 7 cut(s) 199, 263, 385, 561, 784, 906, 942
MroXI GAANNNNTTC 1 cut(s) 784
MseI TTAA 2 cut(s) 702, 860
MslI CAYNNNNRTG 2 cut(s) 453, 455
MspA1I CMGCKG 1 cut(s) 347
MspR9I CCNGG 2 cut(s) 113, 336
MunI CAATTG 1 cut(s) 612
Mva1269I GAATGC 1 cut(s) 944
MvaI CCWGG 2 cut(s) 113, 336
MvnI CGCG 1 cut(s) 558
MwoI GCNNNNNNNGC 3 cut(s) 95, 108, 325
NdeII GATC 2 cut(s) 433, 885
NheI GCTAGC 1 cut(s) 98
NlaIII CATG 3 cut(s) 201, 393, 646
NlaIV GGNNCC 2 cut(s) 548, 580
NmeAIII GCCGAG 1 cut(s) 236
NmuCI GTSAC 1 cut(s) 355
OliI CACNNNNGTG 1 cut(s) 455
PctI GAATGC 1 cut(s) 944
PdmI GAANNNNTTC 1 cut(s) 784
PfeI GAWTC 2 cut(s) 261, 276
PflMI CCANNNNNTGG 2 cut(s) 543, 812
PkrI GCNGC 2 cut(s) 91, 104
PleI GAGTC 2 cut(s) 44, 616
PmaCI CACGTG 1 cut(s) 9
PmlI CACGTG 1 cut(s) 9
PpsI GAGTC 2 cut(s) 44, 616
Ppu21I YACGTR 1 cut(s) 9
Psp6I CCWGG 2 cut(s) 111, 334
PspCI CACGTG 1 cut(s) 9
PspGI CCWGG 2 cut(s) 111, 334
PspN4I GGNNCC 2 cut(s) 548, 580
PspPI GGNCC 4 cut(s) 208, 634, 714, 771
PstI CTGCAG 1 cut(s) 902
PstNI CAGNNNCTG 1 cut(s) 108
RsaI GTAC 1 cut(s) 440
RsaNI GTAC 1 cut(s) 439
RseI CAYNNNNRTG 2 cut(s) 453, 455
SaqAI TTAA 2 cut(s) 702, 860
SatI GCNGC 2 cut(s) 90, 103
Sau3AI GATC 2 cut(s) 433, 885
Sau96I GGNCC 4 cut(s) 208, 634, 714, 771
SchI GAGTC 2 cut(s) 44, 617
ScrFI CCNGG 2 cut(s) 113, 336
SetI ASST 8 cut(s) 11, 107, 217, 240, 255, 330, 724, 917
SfaNI GCATC 1 cut(s) 748
SfcI CTRYAG 1 cut(s) 898
SinI GGWCC 3 cut(s) 634, 714, 771
SmiMI CAYNNNNRTG 2 cut(s) 453, 455
SmlI CTYRAG 3 cut(s) 323, 424, 933
SmoI CTYRAG 3 cut(s) 323, 424, 933
Sse9I AATT 4 cut(s) 172, 612, 857, 892
SsiI CCGC 2 cut(s) 345, 360
SspMI CTAG 4 cut(s) 99, 168, 657, 698
StyD4I CCNGG 2 cut(s) 111, 334
StyI CCWWGG 2 cut(s) 466, 922
TaaI ACNGT 3 cut(s) 355, 445, 492
TaiI ACGT 1 cut(s) 11
TaqI TCGA 2 cut(s) 255, 408
TasI AATT 4 cut(s) 172, 612, 857, 892
TfiI GAWTC 2 cut(s) 261, 276
Tru1I TTAA 2 cut(s) 702, 860
Tru9I TTAA 2 cut(s) 702, 860
TscAI CASTG 1 cut(s) 358
TseFI GTSAC 1 cut(s) 355
TseI GCWGC 2 cut(s) 89, 102
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 2 cut(s) 26, 718
TspGWI ACGGA 1 cut(s) 426
TspRI CASTG 1 cut(s) 358
Van91I CCANNNNNTGG 2 cut(s) 543, 812
VpaK11BI GGWCC 3 cut(s) 634, 714, 771
XmnI GAANNNNTTC 1 cut(s) 784
XspI CTAG 4 cut(s) 99, 168, 657, 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.