Rmu_sc0001023.1_g000004

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001023.1
OG0000460
Physical Location & Seq
Forward (+)
19034 .. 20096
1063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001023.1_g000004.1.cds

Sequence Viewer

Length: 741 bp
atgcaacattatccaaaagggtccaaccttggtaggagccagtcgaagctggcatataatgtgctagctggaccttcctccagtaagtacttcaacacgctcaagcttgtcgccggaaactctgctggcaccgtcaccgcctactatttaaaatccgaagggtctacatgggatgagatagactttgagttcttgggaaacctgaccggcaacccgtacactcttcacaccaatgtcttcagccaaggcaaaggaaacagagaacagcaattccatctctggttcgacccaactgctgatttccacacctattccattctctggaatccacagcgcattgttttctctgttgatggtactcccattagagagttcaagaaccaagaatcgaaaggtgttccattcccaaagagccaagcaatgagaatacactcgagcctctggaatgctgatgattgggcaacaatgggaggacgtgtaaagacggattggaatgcagctccgttcactgcctcttacaggaatttcaatgctgaagcatgcatttgggcttctggatcatcttcttgcggtacaagcagtgcccctgcttcgactaatggagattggctttcgcaagaattggacagtgctagttatgcaaagctgagttgggtgcagaaaaactacatgatctacaattactgcacagatgtcaacagattccctcagggtctcccagttgaatgcagcacttcatag

Protein Analysis

246

Amino Acids

27.43

Weight (kDa)

6.95

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 128
AccB7I CCANNNNNTGG 1 cut(s) 321
AccI GTMKAC 1 cut(s) 164
AciI CCGC 2 cut(s) 138, 570
AclWI GGATC 1 cut(s) 565
AcsI RAATTY 1 cut(s) 523
AcuI CTGAAG 2 cut(s) 223, 555
AfaI GTAC 4 cut(s) 89, 218, 358, 574
AfiI CCNNNNNNNGG 2 cut(s) 321, 519
AflIII ACRYGT 1 cut(s) 475
AgsI TTSAA 4 cut(s) 94, 376, 529, 725
AjiI CACGTC 1 cut(s) 476
AloI GAACNNNNNNTCC 2 cut(s) 255, 287
AluBI AGCT 5 cut(s) 49, 68, 106, 500, 646
AluI AGCT 5 cut(s) 49, 68, 106, 500, 646
Alw26I GTCTC 1 cut(s) 719
AlwI GGATC 1 cut(s) 565
Ama87I CYCGRG 1 cut(s) 433
ApeKI GCWGC 2 cut(s) 497, 729
ApoI RAATTY 1 cut(s) 523
AspLEI GCGC 1 cut(s) 336
AspS9I GGNCC 2 cut(s) 21, 71
AsuHPI GGTGA 1 cut(s) 127
AsuNHI GCTAGC 1 cut(s) 64
AvaI CYCGRG 1 cut(s) 433
AvaII GGWCC 2 cut(s) 21, 71
AxyI CCTNAGG 1 cut(s) 708
BaeGI GKGCMC 1 cut(s) 586
BanI GGYRCC 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 229
BbvI GCAGC 1 cut(s) 509
BccI CCATC 2 cut(s) 282, 347
BcgI CGANNNNNNTGC 2 cut(s) 275, 309
BcoDI GTCTC 1 cut(s) 719
BfaI CTAG 2 cut(s) 65, 633
BisI GCNGC 2 cut(s) 498, 730
BlsI GCNGC 2 cut(s) 499, 731
BmcAI AGTACT 1 cut(s) 89
Bme18I GGWCC 2 cut(s) 21, 71
BmeT110I CYCGRG 1 cut(s) 433
BmgBI CACGTC 1 cut(s) 476
BmgT120I GGNCC 2 cut(s) 21, 71
BmiI GGNNCC 3 cut(s) 22, 38, 130
BmrI ACTGGG 1 cut(s) 713
BmtI GCTAGC 1 cut(s) 68
BmuI ACTGGG 1 cut(s) 713
BpiI GAAGAC 1 cut(s) 229
BpmI CTGGAG 1 cut(s) 64
BpuEI CTTGAG 1 cut(s) 86
BsaI GGTCTC 1 cut(s) 719
BsaJI CCNNGG 2 cut(s) 28, 244
BsaXI ACNNNNNCTCC 2 cut(s) 462, 492
Bsc4I CCNNNNNNNGG 2 cut(s) 321, 519
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 3 cut(s) 40, 81, 719
Bse21I CCTNAGG 1 cut(s) 708
Bse3DI GCAATG 1 cut(s) 426
BseDI CCNNGG 2 cut(s) 28, 244
BseGI GGATG 1 cut(s) 178
BseLI CCNNNNNNNGG 2 cut(s) 321, 519
BseMI GCAATG 1 cut(s) 426
BseMII CTCAG 2 cut(s) 638, 722
BseNI ACTGG 3 cut(s) 40, 81, 719
BseSI GKGCMC 1 cut(s) 586
BseXI GCAGC 1 cut(s) 509
BsgI GTGCAG 2 cut(s) 670, 677
BshNI GGYRCC 1 cut(s) 128
BsiHKCI CYCGRG 1 cut(s) 433
BsiSI CCGG 2 cut(s) 114, 207
BslI CCNNNNNNNGG 2 cut(s) 321, 519
BsmAI GTCTC 1 cut(s) 719
BsmI GAATGC 3 cut(s) 451, 499, 731
Bso31I GGTCTC 1 cut(s) 719
BsoBI CYCGRG 1 cut(s) 433
Bsp1286I GDGCHC 1 cut(s) 586
Bsp143I GATC 2 cut(s) 557, 672
BspACI CCGC 2 cut(s) 138, 570
BspCNI CTCAG 2 cut(s) 639, 721
BspLI GGNNCC 3 cut(s) 22, 38, 130
BspOI GCTAGC 1 cut(s) 68
BspPI GGATC 1 cut(s) 565
BspT107I GGYRCC 1 cut(s) 128
BspTNI GGTCTC 1 cut(s) 719
BsrDI GCAATG 1 cut(s) 426
BsrFI RCCGGY 1 cut(s) 206
BsrI ACTGG 3 cut(s) 40, 81, 719
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 2 cut(s) 28, 244
BssMI GATC 2 cut(s) 557, 672
BssT1I CCWWGG 2 cut(s) 28, 244
Bst4CI ACNGT 2 cut(s) 133, 629
Bst6I CTCTTC 1 cut(s) 228
BstC8I GCNNGC 4 cut(s) 51, 66, 127, 541
BstDEI CTNAG 2 cut(s) 647, 708
BstENI CCTNNNNNAGG 1 cut(s) 517
BstF5I GGATG 1 cut(s) 178
BstHHI GCGC 1 cut(s) 336
BstKTI GATC 2 cut(s) 560, 675
BstMAI GTCTC 1 cut(s) 719
BstMBI GATC 2 cut(s) 557, 672
BstMWI GCNNNNNNNGC 2 cut(s) 576, 638
BstNSI RCATGY 1 cut(s) 543
BstSLI GKGCMC 1 cut(s) 586
BstV1I GCAGC 1 cut(s) 509
BstV2I GAAGAC 1 cut(s) 229
Bsu36I CCTNAGG 1 cut(s) 708
BtrI CACGTC 1 cut(s) 476
BtsCI GGATG 1 cut(s) 178
BtsI GCAGTG 2 cut(s) 507, 586
BtsIMutI CAGTG 3 cut(s) 507, 586, 634
Cac8I GCNNGC 4 cut(s) 51, 66, 127, 541
CfoI GCGC 1 cut(s) 336
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 2 cut(s) 21, 71
Csp6I GTAC 4 cut(s) 88, 217, 357, 573
CviAII CATG 3 cut(s) 168, 540, 670
CviQI GTAC 4 cut(s) 88, 217, 357, 573
DdeI CTNAG 2 cut(s) 647, 708
DpnI GATC 2 cut(s) 559, 674
DpnII GATC 2 cut(s) 557, 672
DraI TTTAAA 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco130I CCWWGG 2 cut(s) 28, 244
Eco31I GGTCTC 1 cut(s) 719
Eco47I GGWCC 2 cut(s) 21, 71
Eco57I CTGAAG 2 cut(s) 223, 555
Eco81I CCTNAGG 1 cut(s) 708
Eco88I CYCGRG 1 cut(s) 433
EcoNI CCTNNNNNAGG 1 cut(s) 517
EcoT14I CCWWGG 2 cut(s) 28, 244
EcoT22I ATGCAT 1 cut(s) 545
ErhI CCWWGG 2 cut(s) 28, 244
FaeI CATG 3 cut(s) 171, 543, 673
FaiI YATR 7 cut(s) 55, 57, 169, 541, 639, 671, 739
FatI CATG 3 cut(s) 167, 539, 669
FblI GTMKAC 1 cut(s) 164
Fnu4HI GCNGC 2 cut(s) 498, 730
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 2 cut(s) 498, 730
FspBI CTAG 2 cut(s) 65, 633
GlaI GCGC 1 cut(s) 335
GluI GCNGC 2 cut(s) 498, 730
GsuI CTGGAG 1 cut(s) 64
HapII CCGG 2 cut(s) 114, 207
HhaI GCGC 1 cut(s) 336
Hin1II CATG 3 cut(s) 171, 543, 673
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HincII GTYRAC 1 cut(s) 697
HindII GTYRAC 1 cut(s) 697
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 3 cut(s) 325, 386, 702
HpaII CCGG 2 cut(s) 114, 207
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 4 cut(s) 165, 219, 507, 697
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 4 cut(s) 322, 376, 442, 555
Hpy8I GTNNAC 4 cut(s) 165, 219, 507, 697
HpyAV CCTTC 2 cut(s) 84, 152
HpyCH4III ACNGT 2 cut(s) 133, 629
HpyCH4IV ACGT 1 cut(s) 475
HpyCH4V TGCA 7 cut(s) 4, 497, 543, 641, 658, 687, 729
HpyF10VI GCNNNNNNNGC 2 cut(s) 576, 638
HpyF3I CTNAG 2 cut(s) 647, 708
HpySE526I ACGT 1 cut(s) 475
Hsp92II CATG 3 cut(s) 171, 543, 673
HspAI GCGC 1 cut(s) 334
Kzo9I GATC 2 cut(s) 557, 672
LmnI GCTCC 2 cut(s) 36, 505
Lsp1109I GCAGC 1 cut(s) 509
MaeI CTAG 2 cut(s) 65, 633
MaeII ACGT 1 cut(s) 475
MaeIII GTNAC 1 cut(s) 133
MalI GATC 2 cut(s) 559, 674
MboI GATC 2 cut(s) 557, 672
MboII GAAGA 3 cut(s) 215, 229, 555
MhlI GDGCHC 1 cut(s) 586
MluCI AATT 4 cut(s) 269, 523, 620, 679
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 5 cut(s) 88, 449, 464, 523, 717
Mph1103I ATGCAT 1 cut(s) 545
MseI TTAA 1 cut(s) 149
MslI CAYNNNNRTG 1 cut(s) 231
MspI CCGG 2 cut(s) 114, 207
Mva1269I GAATGC 3 cut(s) 451, 499, 731
MwoI GCNNNNNNNGC 2 cut(s) 576, 638
NdeII GATC 2 cut(s) 557, 672
NheI GCTAGC 1 cut(s) 64
NlaIII CATG 3 cut(s) 171, 543, 673
NlaIV GGNNCC 3 cut(s) 22, 38, 130
NmuCI GTSAC 1 cut(s) 133
NsiI ATGCAT 1 cut(s) 545
NspI RCATGY 1 cut(s) 543
PaeI GCATGC 1 cut(s) 543
PaeR7I CTCGAG 1 cut(s) 433
PctI GAATGC 3 cut(s) 451, 499, 731
PfeI GAWTC 3 cut(s) 325, 386, 702
PflMI CCANNNNNTGG 1 cut(s) 321
PkrI GCNGC 2 cut(s) 499, 731
PspN4I GGNNCC 3 cut(s) 22, 38, 130
PspPI GGNCC 2 cut(s) 21, 71
PspXI VCTCGAGB 1 cut(s) 433
RsaI GTAC 4 cut(s) 89, 218, 358, 574
RsaNI GTAC 4 cut(s) 88, 217, 357, 573
RseI CAYNNNNRTG 1 cut(s) 231
SaqAI TTAA 1 cut(s) 149
SatI GCNGC 2 cut(s) 498, 730
Sau3AI GATC 2 cut(s) 557, 672
Sau96I GGNCC 2 cut(s) 21, 71
ScaI AGTACT 1 cut(s) 89
SduI GDGCHC 1 cut(s) 586
Sfr274I CTCGAG 1 cut(s) 433
SinI GGWCC 2 cut(s) 21, 71
SlaI CTCGAG 1 cut(s) 433
SmiMI CAYNNNNRTG 1 cut(s) 231
SmlI CTYRAG 2 cut(s) 101, 433
SmoI CTYRAG 2 cut(s) 101, 433
SphI GCATGC 1 cut(s) 543
Sse9I AATT 4 cut(s) 269, 523, 620, 679
SsiI CCGC 2 cut(s) 138, 570
SspMI CTAG 2 cut(s) 65, 633
StyI CCWWGG 2 cut(s) 28, 244
TaaI ACNGT 2 cut(s) 133, 629
TaiI ACGT 1 cut(s) 478
TaqI TCGA 5 cut(s) 44, 285, 389, 434, 593
TasI AATT 4 cut(s) 269, 523, 620, 679
TatI WGTACW 1 cut(s) 87
TfiI GAWTC 3 cut(s) 325, 386, 702
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TscAI CASTG 3 cut(s) 514, 586, 634
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 2 cut(s) 497, 729
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 726
TspGWI ACGGA 2 cut(s) 492, 500
TspRI CASTG 3 cut(s) 514, 586, 634
Van91I CCANNNNNTGG 1 cut(s) 321
VpaK11BI GGWCC 2 cut(s) 21, 71
XagI CCTNNNNNAGG 1 cut(s) 517
XapI RAATTY 1 cut(s) 523
XceI RCATGY 1 cut(s) 543
XhoI CTCGAG 1 cut(s) 433
XmiI GTMKAC 1 cut(s) 164
XspI CTAG 2 cut(s) 65, 633
ZrmI AGTACT 1 cut(s) 89
Zsp2I ATGCAT 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.