Prupe.1G088600_v2.0.a1

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000460
Physical Location & Seq
Reverse (-)
6632432 .. 6634448
2017 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G088600.1

Sequence Viewer

Length: 882 bp
ATGGCTACAATTTTATGTCCTCCAAATTATGTTCTACTAATTTCCCTCATGGTTGGCTGTTTCGTGGCTGCCTCTGCTAGCAACTTCTACCAGGATTTTCAGGTTACGTGGGGCGATGGGCGCGGAAAGATTCTCAACAACGGGGAACTTCTTACTCTCTCGCTTGACAAGGCCTCTGGCTCTGGCTTCCAGTCCAAAAATGAATATCTCTATGGAAAGATTGATATGCAAATCAAGCTTGTCCCTGGTAACTCTGCTGGCACTGTCACGGCCTATTATCTGCGCTCAGAAGGGTCTTCATGGGATGAGATAGACTTTGAGTTCTTGGGGAATCTTAGCGGTGATCCTTATATTGTTCACACAAATGTTTTCAGCCAGGGCAAAGGCAACAAAGAGCAGCAGTTCTACCTCTGGTTTGACCCCACTGCTGATTTCCACACATATTCGATTCTTTGGAATGCCCAACATATTGTCCTCTATGTTGATGGCACACCCATTAGAGAGTTCAAGAACTCGGAGTCGATTGGTGTTCCATACCCAAAGAACTTTCCCATGAGGATATATTCAAGCCTCTGGAACGCTGATGACTGGGCTACAAGAGGAGGTCTGGTCAAGACAGATTGGACCCAAGCTCCTTTCACTGCTTCATACAGGAATTTCAATGCGGACAATGCCTGTGTATGGTGGTCCTCTGGTTCCACTTCTTGCACTTCTTCAAATTCTAACTCAACCAGGTCTGTTTTGCTCTCAGAAGAATTAGACTCCACCGGCCAAGAGAGGCTTCAGTGGGTGCAAAAGAATTACATGGTTTACAATTATTGCACAGACACAAAGCGATTTCCACAGGGCCTCCCTCCAGAATGCACAGCCAACAAATCTTAG

Protein Analysis

294

Amino Acids

32.95

Weight (kDa)

5.12

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 123
AciI CCGC 3 cut(s) 123, 339, 665
AclWI GGATC 1 cut(s) 338
AcoI YGGCCR 1 cut(s) 769
AcsI RAATTY 2 cut(s) 655, 718
AcuI CTGAAG 1 cut(s) 767
AfiI CCNNNNNNNGG 1 cut(s) 681
AgsI TTSAA 4 cut(s) 508, 567, 661, 717
AjnI CCWGG 4 cut(s) 90, 244, 375, 731
AjuI GAANNNNNNNTTGG 2 cut(s) 765, 797
AluBI AGCT 2 cut(s) 238, 632
AluI AGCT 2 cut(s) 238, 632
AlwI GGATC 1 cut(s) 338
AoxI GGCC 4 cut(s) 171, 270, 769, 847
ApeKI GCWGC 2 cut(s) 68, 397
ApoI RAATTY 2 cut(s) 655, 718
AspLEI GCGC 2 cut(s) 123, 285
AspS9I GGNCC 3 cut(s) 624, 687, 847
AsuHPI GGTGA 1 cut(s) 353
AsuNHI GCTAGC 1 cut(s) 77
AvaII GGWCC 2 cut(s) 624, 687
BbsI GAAGAC 1 cut(s) 288
BbvI GCAGC 2 cut(s) 55, 409
BccI CCATC 2 cut(s) 110, 479
BceAI ACGGC 1 cut(s) 285
BciT130I CCWGG 4 cut(s) 92, 246, 377, 733
BfaI CTAG 1 cut(s) 78
BisI GCNGC 2 cut(s) 69, 398
BlsI GCNGC 2 cut(s) 70, 399
Bme1390I CCNGG 4 cut(s) 92, 246, 377, 733
Bme18I GGWCC 2 cut(s) 624, 687
BmgT120I GGNCC 3 cut(s) 624, 687, 847
BmiI GGNNCC 2 cut(s) 626, 697
BmrFI CCNGG 4 cut(s) 92, 246, 377, 733
BmrI ACTGGG 1 cut(s) 598
BmtI GCTAGC 1 cut(s) 81
BmuI ACTGGG 1 cut(s) 598
BpiI GAAGAC 1 cut(s) 288
BpmI CTGGAG 1 cut(s) 840
BsaAI YACGTR 1 cut(s) 108
BsaJI CCNNGG 2 cut(s) 244, 376
BsaXI ACNNNNNCTCC 6 cut(s) 594, 616, 624, 646, 834, 864
Bsc4I CCNNNNNNNGG 1 cut(s) 681
Bse118I RCCGGY 1 cut(s) 767
Bse1I ACTGG 2 cut(s) 190, 593
BseBI CCWGG 4 cut(s) 92, 246, 377, 733
BseDI CCNNGG 2 cut(s) 244, 376
BseGI GGATG 1 cut(s) 310
BseLI CCNNNNNNNGG 1 cut(s) 681
BseMII CTCAG 2 cut(s) 300, 762
BseNI ACTGG 2 cut(s) 190, 593
BseRI GAGGAG 1 cut(s) 615
BseXI GCAGC 2 cut(s) 55, 409
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 4 cut(s) 173, 272, 771, 849
BsiSI CCGG 1 cut(s) 768
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 1 cut(s) 681
BsmFI GGGAC 1 cut(s) 227
BsmI GAATGC 2 cut(s) 463, 866
BsnI GGCC 4 cut(s) 173, 272, 771, 849
Bsp143I GATC 1 cut(s) 343
BspACI CCGC 3 cut(s) 123, 339, 665
BspANI GGCC 4 cut(s) 173, 272, 771, 849
BspCNI CTCAG 2 cut(s) 299, 761
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 2 cut(s) 626, 697
BspOI GCTAGC 1 cut(s) 81
BspPI GGATC 1 cut(s) 338
BsrFI RCCGGY 1 cut(s) 767
BsrI ACTGG 2 cut(s) 190, 593
BssAI RCCGGY 1 cut(s) 767
BssECI CCNNGG 2 cut(s) 244, 376
BssMI GATC 1 cut(s) 343
Bst2UI CCWGG 4 cut(s) 92, 246, 377, 733
Bst4CI ACNGT 1 cut(s) 265
BstBAI YACGTR 1 cut(s) 108
BstC8I GCNNGC 2 cut(s) 79, 259
BstDEI CTNAG 4 cut(s) 286, 335, 748, 879
BstF5I GGATG 1 cut(s) 310
BstFNI CGCG 1 cut(s) 123
BstHHI GCGC 2 cut(s) 123, 285
BstKTI GATC 1 cut(s) 346
BstMBI GATC 1 cut(s) 343
BstMWI GCNNNNNNNGC 4 cut(s) 74, 120, 235, 671
BstNI CCWGG 4 cut(s) 92, 246, 377, 733
BstSCI CCNGG 4 cut(s) 90, 244, 375, 731
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 55, 409
BstV2I GAAGAC 1 cut(s) 288
BsuRI GGCC 4 cut(s) 173, 272, 771, 849
BtgZI GCGATG 1 cut(s) 129
BtsCI GGATG 1 cut(s) 310
BtsI GCAGTG 2 cut(s) 423, 639
BtsIMutI CAGTG 4 cut(s) 261, 423, 639, 791
Cac8I GCNNGC 2 cut(s) 79, 259
CfoI GCGC 2 cut(s) 123, 285
Cfr10I RCCGGY 1 cut(s) 767
Cfr13I GGNCC 3 cut(s) 624, 687, 847
CsiI ACCWGGT 1 cut(s) 731
CviAII CATG 4 cut(s) 49, 300, 553, 805
DdeI CTNAG 4 cut(s) 286, 335, 748, 879
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
EaeI YGGCCR 1 cut(s) 769
Eco147I AGGCCT 1 cut(s) 173
Eco47I GGWCC 2 cut(s) 624, 687
Eco57I CTGAAG 1 cut(s) 767
EcoO109I RGGNCCY 1 cut(s) 847
EcoRII CCWGG 4 cut(s) 90, 244, 375, 731
FaeI CATG 4 cut(s) 52, 303, 556, 808
FalI AAGNNNNNCTT 2 cut(s) 765, 797
FaqI GGGAC 1 cut(s) 227
FatI CATG 4 cut(s) 48, 299, 552, 804
Fnu4HI GCNGC 2 cut(s) 69, 398
FokI GGATG 1 cut(s) 317
Fsp4HI GCNGC 2 cut(s) 69, 398
FspBI CTAG 1 cut(s) 78
GlaI GCGC 2 cut(s) 122, 284
GluI GCNGC 2 cut(s) 69, 398
GsuI CTGGAG 1 cut(s) 840
HaeIII GGCC 4 cut(s) 173, 272, 771, 849
HapII CCGG 1 cut(s) 768
HhaI GCGC 2 cut(s) 123, 285
Hin1II CATG 4 cut(s) 52, 303, 556, 808
Hin6I GCGC 2 cut(s) 121, 283
HinP1I GCGC 2 cut(s) 121, 283
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 5 cut(s) 130, 331, 448, 518, 761
HpaII CCGG 1 cut(s) 768
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 2 cut(s) 358, 811
Hpy188I TCNGA 3 cut(s) 289, 517, 751
Hpy188III TCNNGA 4 cut(s) 508, 574, 613, 857
Hpy8I GTNNAC 2 cut(s) 358, 811
HpyAV CCTTC 1 cut(s) 284
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 5 cut(s) 229, 708, 793, 822, 864
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 120, 235, 671
HpyF3I CTNAG 4 cut(s) 286, 335, 748, 879
HpySE526I ACGT 1 cut(s) 107
Hsp92II CATG 4 cut(s) 52, 303, 556, 808
HspAI GCGC 2 cut(s) 121, 283
Kzo9I GATC 1 cut(s) 343
LmnI GCTCC 1 cut(s) 637
Lsp1109I GCAGC 2 cut(s) 55, 409
MabI ACCWGGT 1 cut(s) 731
MaeI CTAG 1 cut(s) 78
MaeII ACGT 1 cut(s) 107
MaeIII GTNAC 3 cut(s) 103, 248, 265
MalI GATC 1 cut(s) 345
MboI GATC 1 cut(s) 343
MboII GAAGA 3 cut(s) 288, 705, 764
MluCI AATT 8 cut(s) 9, 25, 39, 655, 718, 755, 799, 814
MlyI GAGTC 2 cut(s) 527, 755
MslI CAYNNNNRTG 1 cut(s) 363
MspI CCGG 1 cut(s) 768
MspR9I CCNGG 4 cut(s) 92, 246, 377, 733
Mva1269I GAATGC 2 cut(s) 463, 866
MvaI CCWGG 4 cut(s) 92, 246, 377, 733
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 4 cut(s) 74, 120, 235, 671
NdeII GATC 1 cut(s) 343
NheI GCTAGC 1 cut(s) 77
NlaIII CATG 4 cut(s) 52, 303, 556, 808
NlaIV GGNNCC 2 cut(s) 626, 697
NmuCI GTSAC 1 cut(s) 265
PceI AGGCCT 1 cut(s) 173
PctI GAATGC 2 cut(s) 463, 866
PfeI GAWTC 3 cut(s) 130, 331, 448
PkrI GCNGC 2 cut(s) 70, 399
PleI GAGTC 2 cut(s) 526, 755
PpsI GAGTC 2 cut(s) 526, 755
Ppu21I YACGTR 1 cut(s) 108
Psp6I CCWGG 4 cut(s) 90, 244, 375, 731
PspGI CCWGG 4 cut(s) 90, 244, 375, 731
PspN4I GGNNCC 2 cut(s) 626, 697
PspPI GGNCC 3 cut(s) 624, 687, 847
RseI CAYNNNNRTG 1 cut(s) 363
SatI GCNGC 2 cut(s) 69, 398
Sau3AI GATC 1 cut(s) 343
Sau96I GGNCC 3 cut(s) 624, 687, 847
SchI GAGTC 2 cut(s) 527, 755
ScrFI CCNGG 4 cut(s) 92, 246, 377, 733
SetI ASST 7 cut(s) 105, 110, 240, 411, 607, 634, 737
SexAI ACCWGGT 1 cut(s) 731
SinI GGWCC 2 cut(s) 624, 687
SmiMI CAYNNNNRTG 1 cut(s) 363
Sse9I AATT 8 cut(s) 9, 25, 39, 655, 718, 755, 799, 814
SseBI AGGCCT 1 cut(s) 173
SsiI CCGC 3 cut(s) 123, 339, 665
SspMI CTAG 1 cut(s) 78
StuI AGGCCT 1 cut(s) 173
StyD4I CCNGG 4 cut(s) 90, 244, 375, 731
TaaI ACNGT 1 cut(s) 265
TaiI ACGT 1 cut(s) 110
TaqI TCGA 2 cut(s) 446, 521
TasI AATT 8 cut(s) 9, 25, 39, 655, 718, 755, 799, 814
TfiI GAWTC 3 cut(s) 130, 331, 448
TscAI CASTG 4 cut(s) 268, 430, 646, 791
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 2 cut(s) 68, 397
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 3 cut(s) 216, 288, 636
TspRI CASTG 4 cut(s) 268, 430, 646, 791
VpaK11BI GGWCC 2 cut(s) 624, 687
XapI RAATTY 2 cut(s) 655, 718
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.