Rh4AG116800

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
25166253 .. 25167512
1260 bp
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UTR
Exon/CDS
Intron
Rh4AG116800.1

Sequence Viewer

Length: 426 bp
ATGCAGCTCAAGCTTGTCGCCGTAAACTCTGCTGGAACTGTCACAGCCTATTATTTGAAATCAGAAGGGTCTACTTGGGATGAGATAGACTTTGAGTTCTTGGGGAACTTGAGTGGCGACCCTTACATTCTTCACACCAATATCTTCAGCCAAGGCAAAGGAAACCGAGAGCAGCAATTCCACCTCTGGTTTGACCCAACTGCTGATTTCCACACCTATTCCATTCTCTGGAATCCACAGCGCATTGTTTTTTCAGTTGATGGCACTCCCATTAGAGAGTTCAAGAATCAAGAGTCGAAAGGTGTTCCATTCTTGAAGATCCAAGCAATGAGAGTACACTCGAGCCTCTGGAACACCGATGATTGGGCAACAAGAGGTGGACTTGTAAAGACATATTGGAGTGCAGCTTCTTTCACTGCCTCTTAG

Protein Analysis

141

Amino Acids

16.07

Weight (kDa)

6.04

Isoelectric Point (pI)

19.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_16 PF00722 2 - 134 6.3e-50 Glycosyl hydrolases family 16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 228
AccI GTMKAC 1 cut(s) 71
AclWI GGATC 1 cut(s) 313
AcuI CTGAAG 1 cut(s) 130
AfaI GTAC 1 cut(s) 336
AfiI CCNNNNNNNGG 2 cut(s) 228, 363
AgsI TTSAA 3 cut(s) 58, 283, 316
AluBI AGCT 3 cut(s) 7, 13, 407
AluI AGCT 3 cut(s) 7, 13, 407
AlwI GGATC 1 cut(s) 313
Ama87I CYCGRG 1 cut(s) 340
ApeKI GCWGC 3 cut(s) 4, 172, 404
AspLEI GCGC 1 cut(s) 243
AvaI CYCGRG 1 cut(s) 340
BbvI GCAGC 3 cut(s) 16, 184, 416
BccI CCATC 1 cut(s) 254
BceAI ACGGC 1 cut(s) 5
BisI GCNGC 3 cut(s) 5, 173, 405
BlsI GCNGC 3 cut(s) 6, 174, 406
BmeT110I CYCGRG 1 cut(s) 340
BpuEI CTTGAG 1 cut(s) 130
BsaJI CCNNGG 1 cut(s) 151
Bsc4I CCNNNNNNNGG 2 cut(s) 228, 363
Bse3DI GCAATG 1 cut(s) 333
BseDI CCNNGG 1 cut(s) 151
BseGI GGATG 1 cut(s) 85
BseLI CCNNNNNNNGG 2 cut(s) 228, 363
BseMI GCAATG 1 cut(s) 333
BseXI GCAGC 3 cut(s) 16, 184, 416
BsgI GTGCAG 1 cut(s) 423
BsiHKCI CYCGRG 1 cut(s) 340
BslI CCNNNNNNNGG 2 cut(s) 228, 363
BsoBI CYCGRG 1 cut(s) 340
Bsp143I GATC 1 cut(s) 318
BspPI GGATC 1 cut(s) 313
BsrDI GCAATG 1 cut(s) 333
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 1 cut(s) 318
BssT1I CCWWGG 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 40
BstDEI CTNAG 1 cut(s) 423
BstF5I GGATG 1 cut(s) 85
BstHHI GCGC 1 cut(s) 243
BstKTI GATC 1 cut(s) 321
BstMBI GATC 1 cut(s) 318
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstV1I GCAGC 3 cut(s) 16, 184, 416
BstX2I RGATCY 1 cut(s) 318
BstYI RGATCY 1 cut(s) 318
BtsCI GGATG 1 cut(s) 85
BtsI GCAGTG 1 cut(s) 414
BtsIMutI CAGTG 1 cut(s) 414
CfoI GCGC 1 cut(s) 243
Csp6I GTAC 1 cut(s) 335
CviJI RGCY 6 cut(s) 7, 13, 47, 150, 345, 407
CviKI_1 RGCY 6 cut(s) 7, 13, 47, 150, 345, 407
CviQI GTAC 1 cut(s) 335
DdeI CTNAG 1 cut(s) 423
DpnI GATC 1 cut(s) 320
DpnII GATC 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 130
Eco88I CYCGRG 1 cut(s) 340
EcoT14I CCWWGG 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 151
FaiI YATR 1 cut(s) 394
FblI GTMKAC 1 cut(s) 71
Fnu4HI GCNGC 3 cut(s) 5, 173, 405
FokI GGATG 1 cut(s) 92
Fsp4HI GCNGC 3 cut(s) 5, 173, 405
GlaI GCGC 1 cut(s) 242
GluI GCNGC 3 cut(s) 5, 173, 405
HhaI GCGC 1 cut(s) 243
Hin6I GCGC 1 cut(s) 241
HinP1I GCGC 1 cut(s) 241
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 3 cut(s) 232, 286, 293
Hpy166II GTNNAC 4 cut(s) 25, 72, 337, 380
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 5 cut(s) 229, 283, 290, 313, 349
Hpy8I GTNNAC 4 cut(s) 25, 72, 337, 380
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4V TGCA 2 cut(s) 4, 404
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 423
HspAI GCGC 1 cut(s) 241
Kzo9I GATC 1 cut(s) 318
LpnPI CCDG 4 cut(s) 18, 172, 214, 334
Lsp1109I GCAGC 3 cut(s) 16, 184, 416
MaeIII GTNAC 1 cut(s) 40
MalI GATC 1 cut(s) 320
MboI GATC 1 cut(s) 318
MboII GAAGA 3 cut(s) 122, 136, 328
MflI RGATCY 1 cut(s) 318
MluCI AATT 1 cut(s) 176
MlyI GAGTC 1 cut(s) 302
MnlI CCTC 3 cut(s) 194, 356, 368
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 1 cut(s) 318
NmuCI GTSAC 1 cut(s) 40
PaeR7I CTCGAG 1 cut(s) 340
PfeI GAWTC 2 cut(s) 232, 286
PflMI CCANNNNNTGG 1 cut(s) 228
PkrI GCNGC 3 cut(s) 6, 174, 406
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PspXI VCTCGAGB 1 cut(s) 340
PsuI RGATCY 1 cut(s) 318
RsaI GTAC 1 cut(s) 336
RsaNI GTAC 1 cut(s) 335
SatI GCNGC 3 cut(s) 5, 173, 405
Sau3AI GATC 1 cut(s) 318
SchI GAGTC 1 cut(s) 302
SetI ASST 7 cut(s) 9, 15, 186, 218, 304, 379, 409
Sfr274I CTCGAG 1 cut(s) 340
SlaI CTCGAG 1 cut(s) 340
SmlI CTYRAG 3 cut(s) 8, 109, 340
SmoI CTYRAG 3 cut(s) 8, 109, 340
Sse9I AATT 1 cut(s) 176
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 40
TaqI TCGA 2 cut(s) 296, 341
TasI AATT 1 cut(s) 176
TatI WGTACW 1 cut(s) 334
TfiI GAWTC 2 cut(s) 232, 286
TscAI CASTG 1 cut(s) 421
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 3 cut(s) 4, 172, 404
Tsp45I GTSAC 1 cut(s) 40
TspRI CASTG 1 cut(s) 421
Van91I CCANNNNNTGG 1 cut(s) 228
XhoI CTCGAG 1 cut(s) 340
XmiI GTMKAC 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.