Rorug04G0039000

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000460
Physical Location & Seq
Reverse (-)
5970155 .. 5971004
850 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0039000.1

Sequence Viewer

Length: 402 bp
ATGTTTCAGCTATGCTCTAGCAAGAGTGCCATGTTCTCTTCAGCACAGGCCCTGTCTCTGATGCCCAGGAGGACCCAGATGATGGGAAAGAGTAAGGGAATGAGAATCACATGCCAGGCCGCAATTCCAGCTGATAATGTCCCTGACATGGGTAAGAGGAAGCTTATGAATCTGCTTTTTCTAACGAATCTCACTTCCCTCTGGTTTCCTATGCCACTTTCTTTGCTCCACCTGGACAATATCATGCTCAAACTGAACAATTGTAGCTTTGATGTTGGAAGTGGTGGTCAAGTTGCCAAGGATGCTCTACGAAACGACGTAATTGCAGCAGAATGGCTTAAGAACCATGGCCCTGGTGACAAGGCTTTCACACAAGGATTGAAGGCTTCTATAGGCTCATAG

Protein Analysis

133

Amino Acids

14.49

Weight (kDa)

9.72

Isoelectric Point (pI)

25.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TM_PetC PF25471 44 - 62 7.5e-06 Iron-sulfur subunit PetC transmembrane anchor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 82
AciI CCGC 1 cut(s) 120
AcuI CTGAAG 1 cut(s) 24
AfiI CCNNNNNNNGG 3 cut(s) 82, 148, 149
AflII CTTAAG 1 cut(s) 338
AgsI TTSAA 1 cut(s) 382
AjnI CCWGG 4 cut(s) 65, 114, 231, 352
AluBI AGCT 4 cut(s) 10, 131, 163, 267
AluI AGCT 4 cut(s) 10, 131, 163, 267
Alw26I GTCTC 1 cut(s) 60
AlwNI CAGNNNCTG 1 cut(s) 52
AoxI GGCC 3 cut(s) 48, 117, 349
ApeKI GCWGC 1 cut(s) 326
AspS9I GGNCC 3 cut(s) 49, 72, 350
AsuHPI GGTGA 1 cut(s) 368
AvaII GGWCC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 338
BccI CCATC 1 cut(s) 76
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BciT130I CCWGG 4 cut(s) 67, 116, 233, 354
BcoDI GTCTC 1 cut(s) 60
BfaI CTAG 1 cut(s) 18
BfmI CTRYAG 1 cut(s) 390
BfrI CTTAAG 1 cut(s) 338
BisI GCNGC 2 cut(s) 120, 327
BlsI GCNGC 2 cut(s) 121, 328
Bme1390I CCNGG 4 cut(s) 67, 116, 233, 354
Bme18I GGWCC 1 cut(s) 72
BmgT120I GGNCC 3 cut(s) 49, 72, 350
BmiI GGNNCC 1 cut(s) 74
BmrFI CCNGG 4 cut(s) 67, 116, 233, 354
BmsI GCATC 2 cut(s) 51, 292
BsaJI CCNNGG 4 cut(s) 65, 297, 346, 352
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 148, 149
BseBI CCWGG 4 cut(s) 67, 116, 233, 354
BseDI CCNNGG 4 cut(s) 65, 297, 346, 352
BseGI GGATG 1 cut(s) 307
BseLI CCNNNNNNNGG 3 cut(s) 82, 148, 149
BseXI GCAGC 1 cut(s) 338
BshFI GGCC 3 cut(s) 50, 119, 351
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 3 cut(s) 82, 148, 149
BsmAI GTCTC 1 cut(s) 60
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 3 cut(s) 50, 119, 351
Bsp19I CCATGG 1 cut(s) 346
BspACI CCGC 1 cut(s) 120
BspANI GGCC 3 cut(s) 50, 119, 351
BspLI GGNNCC 1 cut(s) 74
BspTI CTTAAG 1 cut(s) 338
BssECI CCNNGG 4 cut(s) 65, 297, 346, 352
BssT1I CCWWGG 2 cut(s) 297, 346
Bst2UI CCWGG 4 cut(s) 67, 116, 233, 354
Bst6I CTCTTC 1 cut(s) 43
BstAFI CTTAAG 1 cut(s) 338
BstDSI CCRYGG 1 cut(s) 346
BstF5I GGATG 1 cut(s) 307
BstMAI GTCTC 1 cut(s) 60
BstMWI GCNNNNNNNGC 2 cut(s) 128, 302
BstNI CCWGG 4 cut(s) 67, 116, 233, 354
BstNSI RCATGY 1 cut(s) 114
BstSCI CCNGG 4 cut(s) 65, 114, 231, 352
BstSFI CTRYAG 1 cut(s) 390
BstV1I GCAGC 1 cut(s) 338
BstXI CCANNNNNNTGG 1 cut(s) 353
BsuRI GGCC 3 cut(s) 50, 119, 351
BtgI CCRYGG 1 cut(s) 346
BtsCI GGATG 1 cut(s) 307
CaiI CAGNNNCTG 1 cut(s) 52
Cfr13I GGNCC 3 cut(s) 49, 72, 350
CspCI CAANNNNNGTGG 2 cut(s) 204, 239
CviAII CATG 5 cut(s) 31, 111, 148, 244, 347
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
Eco130I CCWWGG 2 cut(s) 297, 346
Eco47I GGWCC 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 24
EcoO109I RGGNCCY 2 cut(s) 49, 72
EcoRII CCWGG 4 cut(s) 65, 114, 231, 352
EcoT14I CCWWGG 2 cut(s) 297, 346
ErhI CCWWGG 2 cut(s) 297, 346
FaeI CATG 5 cut(s) 34, 114, 151, 247, 350
FaqI GGGAC 1 cut(s) 125
FatI CATG 5 cut(s) 30, 110, 147, 243, 346
Fnu4HI GCNGC 2 cut(s) 120, 327
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 2 cut(s) 120, 327
FspBI CTAG 1 cut(s) 18
GluI GCNGC 2 cut(s) 120, 327
HaeIII GGCC 3 cut(s) 50, 119, 351
Hin1II CATG 5 cut(s) 34, 114, 151, 247, 350
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 3 cut(s) 105, 169, 187
HphI GGTGA 1 cut(s) 368
Hpy188I TCNGA 1 cut(s) 60
Hpy99I CGWCG 1 cut(s) 320
HpyAV CCTTC 1 cut(s) 376
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 1 cut(s) 326
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 302
HpySE526I ACGT 1 cut(s) 318
Hsp92II CATG 5 cut(s) 34, 114, 151, 247, 350
LmnI GCTCC 1 cut(s) 231
Lsp1109I GCAGC 1 cut(s) 338
LweI GCATC 2 cut(s) 51, 292
MaeI CTAG 1 cut(s) 18
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 1 cut(s) 356
MboII GAAGA 1 cut(s) 30
MfeI CAATTG 1 cut(s) 259
MluCI AATT 3 cut(s) 123, 259, 321
MmeI TCCRAC 1 cut(s) 256
MnlI CCTC 3 cut(s) 63, 150, 209
MseI TTAA 1 cut(s) 339
MspA1I CMGCKG 1 cut(s) 131
MspCI CTTAAG 1 cut(s) 338
MspR9I CCNGG 4 cut(s) 67, 116, 233, 354
MunI CAATTG 1 cut(s) 259
MvaI CCWGG 4 cut(s) 67, 116, 233, 354
MwoI GCNNNNNNNGC 2 cut(s) 128, 302
NcoI CCATGG 1 cut(s) 346
NlaIII CATG 5 cut(s) 34, 114, 151, 247, 350
NlaIV GGNNCC 1 cut(s) 74
NmuCI GTSAC 1 cut(s) 356
NspI RCATGY 1 cut(s) 114
PfeI GAWTC 3 cut(s) 105, 169, 187
PflMI CCANNNNNTGG 1 cut(s) 82
PkrI GCNGC 2 cut(s) 121, 328
PpuMI RGGWCCY 1 cut(s) 72
Psp5II RGGWCCY 1 cut(s) 72
Psp6I CCWGG 4 cut(s) 65, 114, 231, 352
PspGI CCWGG 4 cut(s) 65, 114, 231, 352
PspN4I GGNNCC 1 cut(s) 74
PspPI GGNCC 3 cut(s) 49, 72, 350
PspPPI RGGWCCY 1 cut(s) 72
PstNI CAGNNNCTG 1 cut(s) 52
PvuII CAGCTG 1 cut(s) 131
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 2 cut(s) 120, 327
Sau96I GGNCC 3 cut(s) 49, 72, 350
ScrFI CCNGG 4 cut(s) 67, 116, 233, 354
SetI ASST 6 cut(s) 12, 133, 165, 234, 269, 321
SfaNI GCATC 2 cut(s) 51, 292
SfcI CTRYAG 1 cut(s) 390
SinI GGWCC 1 cut(s) 72
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 3 cut(s) 123, 259, 321
SsiI CCGC 1 cut(s) 120
SspMI CTAG 1 cut(s) 18
StyD4I CCNGG 4 cut(s) 65, 114, 231, 352
StyI CCWWGG 2 cut(s) 297, 346
TaiI ACGT 1 cut(s) 321
TasI AATT 3 cut(s) 123, 259, 321
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 3 cut(s) 105, 169, 187
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TseFI GTSAC 1 cut(s) 356
TseI GCWGC 1 cut(s) 326
Tsp45I GTSAC 1 cut(s) 356
TspDTI ATGAA 1 cut(s) 182
Van91I CCANNNNNTGG 1 cut(s) 82
Vha464I CTTAAG 1 cut(s) 338
VpaK11BI GGWCC 1 cut(s) 72
XceI RCATGY 1 cut(s) 114
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.