Rorug04G0039300

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
6027267 .. 6028637
1371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0039300.1

Sequence Viewer

Length: 1371 bp
ATGGCTCAAAGTACTTCAGTTGATATAGAAGCATTGAAAAAGACTATCATAGACGATCTCAAAGATGTTCCTGTTTTGTTCCGCGAAAGCTGCATCTTTAGAGTTCCTGAGGTGCTCCGAAAAAATAATACGAAGGCATATCAACCTGACATTGTTGCAATCGGACCTTTACATGTTCGAGAGCATACACAATATCAACACATGGAAAAGGTGAAACTGTGGTACTTACACGAGCTACTCGATTACATTCGCTCCTCCAAGAAAAAGGATTTGCTGCCAGAGTTGATCAAAGACGTTACAGAAAAAGAGGGTCTGGCCCGTGACTGGTATGCAGAATCGCTTGATATCAGGTCCAATGTCTTCATAAAAGGGATGATACTTGATGGTTGTTTCATAGTACAACTATTTCGGAAGTTCATTTATAAGCAAGGGAATCACAGCGATGGCTTCCAACCCAAGGAAAATGACCCCATACTCAGCATGGATTGCATGATCCAATATTTATGGCATGACATTTTGCTACTCGAAAATCAGCTTCCTTGGTTTGTCCTCCAGAGTGTGTATCGTGTCATCCTGGGCAACCACCGCCCTCTTAGCAACCTTATACTCGCGGTTTTCAAATTTCTACCGTCTATGAAGAATAACTGCGTGGCTTATCAAAATTATCTTTGTTTTCATGATGATGGTAATCACAAGCATGTCCTTGATCTTGTCAGAACTTCGATAGTCCATTCATTCGAGGAAGCTTCCGATGATGGTGAAACAAGATGTCTGCAAAGTTCCGAAGAAGATATACCAGATGTTGGAAAATATATTCCTCCTGCAACTACTCTTTCAAAAGGAGGCGTGAAATTCGAAAAGGTCCTCCACGATGGTAAAAGAAGCATAATGAGTATGAAATTCAAAAATGGGAAATTGAGAATTCCACAACTAGTAATTGATGAGTTGACTGAACCGTTGTTCAGGAACCTCATTGCCTTTGAACAGTGCTCTCAAAGTCATTCTCATGAGATAACATCTTATGCCACTCTAATGGACAAACTCATCTCATCTAAAGAGGACATGGAATTTCTCTGTGAGAAAAATATAATACTAAACTGGCTGAGTGCTGAAGATGGTTTCAAAATCTTCAACAAGATTCACAATGACACTTTGCTCAACAAGTTCCACTATGATGAACTCTGCACCAGTGTGAACAGATATTACAATTTCAATTGTTTCCCTAGGTGTAAGGAAAATTTCAGGCGTAAGTGCTTTGATGCTCCGTGGACAATTATTTCTTTGATCGCAGCAATTTTGCTTTTGTTTCTCACCCTAGTACAGTTCATATTTACTGTTCATGATTCAGGAATAGTGTTCTTTATGCAATGA

Protein Analysis

456

Amino Acids

53.2

Weight (kDa)

6.39

Isoelectric Point (pI)

41.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 32 - 437 3.8e-104 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 423
AccB7I CCANNNNNTGG 1 cut(s) 803
AccII CGCG 2 cut(s) 84, 611
AciI CCGC 3 cut(s) 82, 586, 611
AclWI GGATC 1 cut(s) 487
AcsI RAATTY 6 cut(s) 620, 851, 899, 921, 1067, 1237
AcuI CTGAAG 1 cut(s) 1131
AfaI GTAC 4 cut(s) 13, 224, 399, 1320
AfiI CCNNNNNNNGG 3 cut(s) 324, 457, 803
AflIII ACRYGT 1 cut(s) 172
AgsI TTSAA 8 cut(s) 37, 619, 837, 904, 983, 1123, 1132, 1213
AhlI ACTAGT 1 cut(s) 931
AjnI CCWGG 1 cut(s) 573
AleI CACNNNNGTG 1 cut(s) 1190
AluBI AGCT 4 cut(s) 90, 235, 535, 746
AluI AGCT 4 cut(s) 90, 235, 535, 746
Alw21I GWGCWC 2 cut(s) 117, 992
AlwI GGATC 1 cut(s) 487
AoxI GGCC 1 cut(s) 315
ApeKI GCWGC 3 cut(s) 90, 274, 1289
ApoI RAATTY 6 cut(s) 620, 851, 899, 921, 1067, 1237
AspA2I CCTAGG 1 cut(s) 1223
AspS9I GGNCC 4 cut(s) 164, 316, 351, 862
AsuHPI GGTGA 3 cut(s) 223, 770, 1303
AsuII TTCGAA 1 cut(s) 855
AvaII GGWCC 3 cut(s) 164, 351, 862
AvrII CCTAGG 1 cut(s) 1223
AxyI CCTNAGG 1 cut(s) 108
BarI GAAGNNNNNNTAC 2 cut(s) 777, 809
BauI CACGAG 1 cut(s) 230
BbsI GAAGAC 1 cut(s) 352
Bbv12I GWGCWC 2 cut(s) 117, 992
BbvI GCAGC 3 cut(s) 77, 261, 1301
BccI CCATC 6 cut(s) 377, 437, 677, 749, 866, 1109
BciT130I CCWGG 1 cut(s) 575
BclI TGATCA 1 cut(s) 285
BcuI ACTAGT 1 cut(s) 931
BfaI CTAG 3 cut(s) 932, 1224, 1316
BisI GCNGC 3 cut(s) 91, 275, 1290
BlnI CCTAGG 1 cut(s) 1223
BlsI GCNGC 3 cut(s) 92, 276, 1291
BmcAI AGTACT 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 575
Bme18I GGWCC 3 cut(s) 164, 351, 862
BmgT120I GGNCC 4 cut(s) 164, 316, 351, 862
BmiI GGNNCC 1 cut(s) 968
BmrFI CCNGG 1 cut(s) 575
BmsI GCATC 2 cut(s) 102, 1249
BpiI GAAGAC 1 cut(s) 352
BpmI CTGGAG 1 cut(s) 536
Bpu14I TTCGAA 1 cut(s) 855
BsaBI GATNNNNATC 1 cut(s) 687
BsaJI CCNNGG 5 cut(s) 456, 539, 574, 1223, 1265
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 3 cut(s) 324, 457, 803
Bse1I ACTGG 3 cut(s) 329, 1103, 1188
Bse21I CCTNAGG 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 972
Bse8I GATNNNNATC 1 cut(s) 687
BseBI CCWGG 1 cut(s) 575
BseDI CCNNGG 5 cut(s) 456, 539, 574, 1223, 1265
BseGI GGATG 2 cut(s) 378, 570
BseJI GATNNNNATC 1 cut(s) 687
BseLI CCNNNNNNNGG 3 cut(s) 324, 457, 803
BseMI GCAATG 1 cut(s) 972
BseMII CTCAG 3 cut(s) 99, 490, 1094
BseNI ACTGG 3 cut(s) 329, 1103, 1188
BseRI GAGGAG 1 cut(s) 244
BseXI GCAGC 3 cut(s) 77, 261, 1301
BsgI GTGCAG 1 cut(s) 1168
Bsh1236I CGCG 2 cut(s) 84, 611
BshFI GGCC 1 cut(s) 317
BsiHKAI GWGCWC 2 cut(s) 117, 992
BslI CCNNNNNNNGG 3 cut(s) 324, 457, 803
BsnI GGCC 1 cut(s) 317
Bsp119I TTCGAA 1 cut(s) 855
Bsp1286I GDGCHC 2 cut(s) 117, 992
Bsp143I GATC 5 cut(s) 55, 285, 492, 706, 1284
BspACI CCGC 3 cut(s) 82, 586, 611
BspANI GGCC 1 cut(s) 317
BspCNI CTCAG 3 cut(s) 100, 489, 1095
BspFNI CGCG 2 cut(s) 84, 611
BspHI TCATGA 3 cut(s) 676, 1006, 1339
BspLI GGNNCC 1 cut(s) 968
BspPI GGATC 1 cut(s) 487
BspT104I TTCGAA 1 cut(s) 855
BsrDI GCAATG 1 cut(s) 972
BsrI ACTGG 3 cut(s) 329, 1103, 1188
BssECI CCNNGG 5 cut(s) 456, 539, 574, 1223, 1265
BssMI GATC 5 cut(s) 55, 285, 492, 706, 1284
BssSI CACGAG 1 cut(s) 230
BssT1I CCWWGG 3 cut(s) 456, 539, 1223
Bst2BI CACGAG 1 cut(s) 230
Bst2UI CCWGG 1 cut(s) 575
Bst4CI ACNGT 6 cut(s) 219, 630, 957, 987, 1323, 1336
BstAPI GCANNNNNTGC 1 cut(s) 486
BstBI TTCGAA 1 cut(s) 855
BstDEI CTNAG 4 cut(s) 108, 476, 593, 1103
BstDSI CCRYGG 1 cut(s) 1265
BstF5I GGATG 2 cut(s) 378, 570
BstFNI CGCG 2 cut(s) 84, 611
BstKTI GATC 5 cut(s) 58, 288, 495, 709, 1287
BstMBI GATC 5 cut(s) 55, 285, 492, 706, 1284
BstMWI GCNNNNNNNGC 4 cut(s) 90, 486, 585, 594
BstNI CCWGG 1 cut(s) 575
BstNSI RCATGY 2 cut(s) 176, 701
BstSCI CCNGG 1 cut(s) 573
BstUI CGCG 2 cut(s) 84, 611
BstV1I GCAGC 3 cut(s) 77, 261, 1301
BstV2I GAAGAC 1 cut(s) 352
BstXI CCANNNNNNTGG 1 cut(s) 1033
Bsu36I CCTNAGG 1 cut(s) 108
BsuRI GGCC 1 cut(s) 317
BtgI CCRYGG 1 cut(s) 1265
BtgZI GCGATG 1 cut(s) 456
BtsCI GGATG 2 cut(s) 378, 570
BtsIMutI CAGTG 2 cut(s) 992, 1195
CciI TCATGA 3 cut(s) 676, 1006, 1339
Cfr13I GGNCC 4 cut(s) 164, 316, 351, 862
Csp6I GTAC 4 cut(s) 12, 223, 398, 1319
CviJI RGCY 9 cut(s) 5, 90, 235, 317, 447, 535, 653, 746, 1102
CviKI_1 RGCY 9 cut(s) 5, 90, 235, 317, 447, 535, 653, 746, 1102
CviQI GTAC 4 cut(s) 12, 223, 398, 1319
DdeI CTNAG 4 cut(s) 108, 476, 593, 1103
DpnI GATC 5 cut(s) 57, 287, 494, 708, 1286
DpnII GATC 5 cut(s) 55, 285, 492, 706, 1284
Eco130I CCWWGG 3 cut(s) 456, 539, 1223
Eco32I GATATC 1 cut(s) 346
Eco47I GGWCC 3 cut(s) 164, 351, 862
Eco57I CTGAAG 1 cut(s) 1131
Eco81I CCTNAGG 1 cut(s) 108
EcoO109I RGGNCCY 1 cut(s) 862
EcoRI GAATTC 1 cut(s) 921
EcoRII CCWGG 1 cut(s) 573
EcoRV GATATC 1 cut(s) 346
EcoT14I CCWWGG 3 cut(s) 456, 539, 1223
ErhI CCWWGG 3 cut(s) 456, 539, 1223
FbaI TGATCA 1 cut(s) 285
Fnu4HI GCNGC 3 cut(s) 91, 275, 1290
FokI GGATG 2 cut(s) 385, 557
Fsp4HI GCNGC 3 cut(s) 91, 275, 1290
FspBI CTAG 3 cut(s) 932, 1224, 1316
GluI GCNGC 3 cut(s) 91, 275, 1290
GsuI CTGGAG 1 cut(s) 536
HaeIII GGCC 1 cut(s) 317
HincII GTYRAC 1 cut(s) 948
HindII GTYRAC 1 cut(s) 948
HindIII AAGCTT 1 cut(s) 744
HinfI GANTC 4 cut(s) 335, 433, 1138, 1343
HphI GGTGA 3 cut(s) 223, 770, 1303
Hpy166II GTNNAC 3 cut(s) 948, 1195, 1269
Hpy188I TCNGA 6 cut(s) 119, 164, 411, 716, 751, 784
Hpy188III TCNNGA 8 cut(s) 107, 179, 553, 677, 964, 1007, 1340, 1347
Hpy8I GTNNAC 3 cut(s) 948, 1195, 1269
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 6 cut(s) 219, 630, 957, 987, 1323, 1336
HpyCH4IV ACGT 1 cut(s) 294
HpyCH4V TGCA 8 cut(s) 93, 158, 332, 489, 775, 824, 1185, 1366
HpyF10VI GCNNNNNNNGC 4 cut(s) 90, 486, 585, 594
HpyF3I CTNAG 4 cut(s) 108, 476, 593, 1103
HpySE526I ACGT 1 cut(s) 294
Ksp22I TGATCA 1 cut(s) 285
Kzo9I GATC 5 cut(s) 55, 285, 492, 706, 1284
LmnI GCTCC 3 cut(s) 120, 257, 1267
Lsp1109I GCAGC 3 cut(s) 77, 261, 1301
LweI GCATC 2 cut(s) 102, 1249
MaeI CTAG 3 cut(s) 932, 1224, 1316
MaeII ACGT 1 cut(s) 294
MaeIII GTNAC 2 cut(s) 295, 320
MalI GATC 5 cut(s) 57, 287, 494, 708, 1286
MboI GATC 5 cut(s) 55, 285, 492, 706, 1284
MboII GAAGA 6 cut(s) 352, 649, 797, 800, 1120, 1124
MfeI CAATTG 1 cut(s) 1213
MhlI GDGCHC 2 cut(s) 117, 992
MmeI TCCRAC 2 cut(s) 475, 784
MslI CAYNNNNRTG 7 cut(s) 441, 681, 696, 1005, 1031, 1173, 1190
MspR9I CCNGG 1 cut(s) 575
MunI CAATTG 1 cut(s) 1213
MvaI CCWGG 1 cut(s) 575
MvnI CGCG 2 cut(s) 84, 611
MwoI GCNNNNNNNGC 4 cut(s) 90, 486, 585, 594
NdeII GATC 5 cut(s) 55, 285, 492, 706, 1284
NlaIV GGNNCC 1 cut(s) 968
NmuCI GTSAC 1 cut(s) 320
NspI RCATGY 2 cut(s) 176, 701
NspV TTCGAA 1 cut(s) 855
OliI CACNNNNGTG 1 cut(s) 1190
PagI TCATGA 3 cut(s) 676, 1006, 1339
PciI ACATGT 1 cut(s) 172
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PfeI GAWTC 4 cut(s) 335, 433, 1138, 1343
PflMI CCANNNNNTGG 1 cut(s) 803
PkrI GCNGC 3 cut(s) 92, 276, 1291
PpuMI RGGWCCY 1 cut(s) 862
PscI ACATGT 1 cut(s) 172
PsiI TTATAA 1 cut(s) 423
Psp5II RGGWCCY 1 cut(s) 862
Psp6I CCWGG 1 cut(s) 573
PspGI CCWGG 1 cut(s) 573
PspN4I GGNNCC 1 cut(s) 968
PspPI GGNCC 4 cut(s) 164, 316, 351, 862
PspPPI RGGWCCY 1 cut(s) 862
PsrI GAACNNNNNNTAC 2 cut(s) 1187, 1219
RsaI GTAC 4 cut(s) 13, 224, 399, 1320
RsaNI GTAC 4 cut(s) 12, 223, 398, 1319
RseI CAYNNNNRTG 7 cut(s) 441, 681, 696, 1005, 1031, 1173, 1190
SatI GCNGC 3 cut(s) 91, 275, 1290
Sau3AI GATC 5 cut(s) 55, 285, 492, 706, 1284
Sau96I GGNCC 4 cut(s) 164, 316, 351, 862
ScaI AGTACT 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 575
SduI GDGCHC 2 cut(s) 117, 992
SfaNI GCATC 2 cut(s) 102, 1249
SfuI TTCGAA 1 cut(s) 855
SinI GGWCC 3 cut(s) 164, 351, 862
SmiMI CAYNNNNRTG 7 cut(s) 441, 681, 696, 1005, 1031, 1173, 1190
SpeI ACTAGT 1 cut(s) 931
SsiI CCGC 3 cut(s) 82, 586, 611
SspI AATATT 1 cut(s) 500
SspMI CTAG 3 cut(s) 932, 1224, 1316
StyD4I CCNGG 1 cut(s) 573
StyI CCWWGG 3 cut(s) 456, 539, 1223
TaaI ACNGT 6 cut(s) 219, 630, 957, 987, 1323, 1336
TaiI ACGT 1 cut(s) 297
TaqI TCGA 6 cut(s) 178, 240, 525, 722, 738, 855
TatI WGTACW 3 cut(s) 11, 397, 1318
TfiI GAWTC 4 cut(s) 335, 433, 1138, 1343
TscAI CASTG 2 cut(s) 992, 1195
TseFI GTSAC 1 cut(s) 320
TseI GCWGC 3 cut(s) 90, 274, 1289
Tsp45I GTSAC 1 cut(s) 320
TspGWI ACGGA 1 cut(s) 1254
TspRI CASTG 2 cut(s) 992, 1195
Van91I CCANNNNNTGG 1 cut(s) 803
VpaK11BI GGWCC 3 cut(s) 164, 351, 862
XapI RAATTY 6 cut(s) 620, 851, 899, 921, 1067, 1237
XceI RCATGY 2 cut(s) 176, 701
XcmI CCANNNNNNNNNTGG 1 cut(s) 478
XmaJI CCTAGG 1 cut(s) 1223
XspI CTAG 3 cut(s) 932, 1224, 1316
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.