pycom13g22350

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
19645593 .. 19647282
1690 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g22350.2

Sequence Viewer

Length: 882 bp
ATGGCTGCTTTTTTATCTTCTTCCAGTTATATTCTGCTATTTTCCCTCATGGTCACCTCTTTGATGGTTGCTTCTGCTGGAAACTTCTACCAGGATATTCAGGTTACATGGGGTGATGGCCGCGGTAAGATACTAAACAACGGCGAGCTTCTTACTCTCTCACTTGACAAGTTCTCTGGCTCTGGCTTCCAATCCACAAATCAATATCTTTTTGGAAAAATTGATATGCAAATTAAGTTTGTTCCTGGTAACTCTGCAGGCACTGTCACTACCTATTACTTGCGCTCAGAAGGGTCTTCGTGGGATGAGATAGACTTTGAATTCTTGGGGAATCTTAGTGGCGACCCTTATATTATTCATACCAATATATTCAGCCAAGGCAAAGGCAACAAAGAGCAGCAATTCTACCTCTGGTTCGACCCAACTGCTGATTTTCACACCTACTCTATCCTTTGGAATGCCCAACATATTGTCCTCTATGTTGATGGCACACCCATTAGAGAGTTCAAGAACTTGGAGTCAATTGGTGTTCCATACCCAAAGAACCAGTCCATGAGGATATATTCAAGCCTCTGGAACGCTGATGACTGGGCCACTAGAGGAGGTCTGGTCAAGACGGATTGGTCCCAAGCTCCCTTTACTGCTTCATACAGGAATTTCAATGCTGATAATGCTTGCATTTGGCGGTCTTCGGGTTCTACTTCTTGCAGTTCAAATTCAAACTCAACGAGCTCTGTCTTGCTCTCACAACAATTGGACTCCACAAGCCAAGAGAGGCTTCAATGGGTGCAAAAGAATTACATGGTTTATAATTACTGCGCAGACACAAAGCGATTCCCGCAAGGCCTCCCTCTAGAATGCACTGCCAGCAACACATCTTAA

Protein Analysis

294

Amino Acids

32.92

Weight (kDa)

5.2

Isoelectric Point (pI)

41.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000460)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25810 AT4G30270 AT5G57550 AT5G57560
fragaria_vesca FvH4_3g00833 FvH4_3g00840 FvH4_3g00850 FvH4_4g06700 FvH4_4g09230
malus_domestica MD13G1237300.v1.1 MD13G1268000.v1.1 MD13G1268900.v1.1 MD16G1267200.v1.1 MD16G1267300.v1.1
prunus_persica Prupe.1G069800_v2.0.a1 Prupe.1G088600_v2.0.a1 Prupe.1G088800_v2.0.a1 Prupe.1G088900_v2.0.a1 Prupe.1G089000_v2.0.a1
pyrus_communis pycom13g21020 pycom13g22350 pycom13g22380 pycom16g23630 pycom16g23640
rosa_chinensis RchiOBHm_Chr4g0398631 RchiOBHm_Chr4g0402891 RchiOBHm_Chr4g0402911 RchiOBHm_Chr4g0402921 RchiOBHm_Chr4g0402931 RchiOBHm_Chr4g0402951 RchiOBHm_Chr4g0402961 RchiOBHm_Chr4g0402981
rosa_laevigata RLG00000009031 RLG00000009033 RLG00000009034 RLG00000009035 RLG00000009039 RLG00000009040 RLG00000009339
rosa_multiflora Rmu_co8186292.1_g000001 Rmu_sc0000990.1_g000004 Rmu_sc0001023.1_g000002 Rmu_sc0001023.1_g000004 Rmu_sc0001023.1_g000007 Rmu_sc0001023.1_g000015 Rmu_sc0002178.1_g000007 Rmu_sc0002451.1_g000069 Rmu_sc0002451.1_g000079 Rmu_sc0002451.1_g000080 Rmu_sc0008058.1_g000026 Rmu_sc0008058.1_g000029 Rmu_sc0008058.1_g000030
rosa_roxburghii Rroxscaffold_5G00343590 Rroxscaffold_5G00347620 Rroxscaffold_5G00347630 Rroxscaffold_5G00347640 Rroxscaffold_5G00347650 Rroxscaffold_5G00347660 Rroxscaffold_5G00347670 Rroxscaffold_5G00347690
rosa_rugosa Rorug04G0009900 Rorug04G0039000 Rorug04G0039100 Rorug04G0039200 Rorug04G0039300 Rorug04G0039400 Rorug04G0039500 Rorug04G0039600 Rorug04G0039600 Rorug04G0040200
rosa_samantha Rh4AG087800 Rh4AG116500 Rh4AG116700 Rh4AG116800 Rh4AG116900 Rh4AG117000 Rh4AG117100 Rh4BG109300 Rh4BG109400 Rh4BG109500 Rh4BG109600 Rh4BG109700 Rh4BG109800 Rh4CG096100 Rh4CG123700 Rh4CG124200
rosa_wichuraiana Rw4G007280 Rw4G009320 Rw4G009340 Rw4G009370 Rw4G009380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 810
AasI GACNNNNNNGTC 1 cut(s) 622
Acc16I TGCGCA 1 cut(s) 820
AccII CGCG 1 cut(s) 123
AciI CCGC 4 cut(s) 121, 123, 685, 839
AcoI YGGCCR 1 cut(s) 118
AcsI RAATTY 3 cut(s) 320, 655, 715
AgsI TTSAA 7 cut(s) 320, 508, 567, 661, 714, 720, 782
AjnI CCWGG 2 cut(s) 90, 244
AjuI GAANNNNNNNTTGG 2 cut(s) 762, 794
AluBI AGCT 3 cut(s) 148, 632, 732
AluI AGCT 3 cut(s) 148, 632, 732
Alw21I GWGCWC 1 cut(s) 734
AlwNI CAGNNNCTG 1 cut(s) 263
AoxI GGCC 3 cut(s) 118, 591, 844
ApeKI GCWGC 2 cut(s) 5, 397
ApoI RAATTY 3 cut(s) 320, 655, 715
ArsI GACNNNNNNTTYG 2 cut(s) 533, 565
AspLEI GCGC 2 cut(s) 285, 821
AspS9I GGNCC 2 cut(s) 591, 624
AsuHPI GGTGA 2 cut(s) 46, 125
AvaII GGWCC 1 cut(s) 624
BanII GRGCYC 1 cut(s) 734
BbsI GAAGAC 2 cut(s) 288, 681
Bbv12I GWGCWC 1 cut(s) 734
BbvI GCAGC 1 cut(s) 409
BccI CCATC 3 cut(s) 58, 110, 479
BceAI ACGGC 1 cut(s) 157
BcgI CGANNNNNNTGC 2 cut(s) 407, 441
BciT130I CCWGG 2 cut(s) 92, 246
BfaI CTAG 2 cut(s) 597, 854
BfmI CTRYAG 1 cut(s) 255
BisI GCNGC 3 cut(s) 6, 121, 398
BlsI GCNGC 3 cut(s) 7, 122, 399
Bme1390I CCNGG 2 cut(s) 92, 246
Bme18I GGWCC 1 cut(s) 624
BmgT120I GGNCC 2 cut(s) 591, 624
BmiI GGNNCC 1 cut(s) 626
BmrFI CCNGG 2 cut(s) 92, 246
BmrI ACTGGG 1 cut(s) 598
BmuI ACTGGG 1 cut(s) 598
BpiI GAAGAC 2 cut(s) 288, 681
BsaJI CCNNGG 2 cut(s) 121, 376
BsaXI ACNNNNNCTCC 2 cut(s) 594, 624
Bse1I ACTGG 3 cut(s) 24, 547, 593
BseBI CCWGG 2 cut(s) 92, 246
BseDI CCNNGG 2 cut(s) 121, 376
BseGI GGATG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 3 cut(s) 24, 547, 593
BseRI GAGGAG 1 cut(s) 615
BseXI GCAGC 1 cut(s) 409
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 3 cut(s) 120, 593, 846
BsiHKAI GWGCWC 1 cut(s) 734
BslFI GGGAC 1 cut(s) 610
BsmFI GGGAC 1 cut(s) 610
BsmI GAATGC 2 cut(s) 463, 863
BsnI GGCC 3 cut(s) 120, 593, 846
Bsp1286I GDGCHC 1 cut(s) 734
BspACI CCGC 4 cut(s) 121, 123, 685, 839
BspANI GGCC 3 cut(s) 120, 593, 846
BspCNI CTCAG 1 cut(s) 299
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 626
BspMAI CTGCAG 1 cut(s) 259
BsrI ACTGG 3 cut(s) 24, 547, 593
BssECI CCNNGG 2 cut(s) 121, 376
BssT1I CCWWGG 1 cut(s) 376
Bst2UI CCWGG 2 cut(s) 92, 246
Bst4CI ACNGT 1 cut(s) 265
BstC8I GCNNGC 4 cut(s) 146, 259, 676, 868
BstDEI CTNAG 2 cut(s) 286, 335
BstDSI CCRYGG 1 cut(s) 121
BstEII GGTNACC 1 cut(s) 52
BstF5I GGATG 1 cut(s) 310
BstFNI CGCG 1 cut(s) 123
BstHHI GCGC 2 cut(s) 285, 821
BstMWI GCNNNNNNNGC 3 cut(s) 671, 838, 867
BstNI CCWGG 2 cut(s) 92, 246
BstPI GGTNACC 1 cut(s) 52
BstSCI CCNGG 2 cut(s) 90, 244
BstSFI CTRYAG 1 cut(s) 255
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 409
BstV2I GAAGAC 2 cut(s) 288, 681
BsuRI GGCC 3 cut(s) 120, 593, 846
BtgI CCRYGG 1 cut(s) 121
BtsCI GGATG 1 cut(s) 310
BtsI GCAGTG 1 cut(s) 861
BtsIMutI CAGTG 2 cut(s) 261, 861
Cac8I GCNNGC 4 cut(s) 146, 259, 676, 868
CaiI CAGNNNCTG 1 cut(s) 263
CfoI GCGC 2 cut(s) 285, 821
Cfr13I GGNCC 2 cut(s) 591, 624
Cfr42I CCGCGG 1 cut(s) 124
CviAII CATG 4 cut(s) 49, 108, 553, 802
DdeI CTNAG 2 cut(s) 286, 335
DrdI GACNNNNNNGTC 1 cut(s) 622
DseDI GACNNNNNNGTC 1 cut(s) 622
EaeI YGGCCR 1 cut(s) 118
Ecl136II GAGCTC 1 cut(s) 732
Eco130I CCWWGG 1 cut(s) 376
Eco147I AGGCCT 1 cut(s) 846
Eco24I GRGCYC 1 cut(s) 734
Eco47I GGWCC 1 cut(s) 624
Eco53kI GAGCTC 1 cut(s) 732
Eco91I GGTNACC 1 cut(s) 52
EcoICRI GAGCTC 1 cut(s) 732
EcoO65I GGTNACC 1 cut(s) 52
EcoRI GAATTC 1 cut(s) 320
EcoRII CCWGG 2 cut(s) 90, 244
EcoT14I CCWWGG 1 cut(s) 376
EcoT38I GRGCYC 1 cut(s) 734
ErhI CCWWGG 1 cut(s) 376
FaeI CATG 4 cut(s) 52, 111, 556, 805
FalI AAGNNNNNCTT 2 cut(s) 762, 794
FaqI GGGAC 1 cut(s) 610
FatI CATG 4 cut(s) 48, 107, 552, 801
FauI CCCGC 1 cut(s) 846
Fnu4HI GCNGC 3 cut(s) 6, 121, 398
FokI GGATG 1 cut(s) 317
FriOI GRGCYC 1 cut(s) 734
Fsp4HI GCNGC 3 cut(s) 6, 121, 398
FspBI CTAG 2 cut(s) 597, 854
FspI TGCGCA 1 cut(s) 820
GlaI GCGC 2 cut(s) 284, 820
GluI GCNGC 3 cut(s) 6, 121, 398
HaeIII GGCC 3 cut(s) 120, 593, 846
HhaI GCGC 2 cut(s) 285, 821
Hin1II CATG 4 cut(s) 52, 111, 556, 805
Hin6I GCGC 2 cut(s) 283, 819
HinP1I GCGC 2 cut(s) 283, 819
HinfI GANTC 4 cut(s) 331, 518, 758, 834
HphI GGTGA 2 cut(s) 46, 125
Hpy188I TCNGA 1 cut(s) 289
Hpy188III TCNNGA 4 cut(s) 508, 574, 613, 854
HpyAV CCTTC 1 cut(s) 284
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 6 cut(s) 229, 257, 678, 708, 790, 861
HpyF10VI GCNNNNNNNGC 3 cut(s) 671, 838, 867
HpyF3I CTNAG 2 cut(s) 286, 335
Hsp92II CATG 4 cut(s) 52, 111, 556, 805
HspAI GCGC 2 cut(s) 283, 819
KspI CCGCGG 1 cut(s) 124
LmnI GCTCC 1 cut(s) 637
Lsp1109I GCAGC 1 cut(s) 409
MaeI CTAG 2 cut(s) 597, 854
MaeIII GTNAC 4 cut(s) 52, 103, 248, 265
MboII GAAGA 4 cut(s) 9, 12, 288, 681
MfeI CAATTG 2 cut(s) 522, 752
MhlI GDGCHC 1 cut(s) 734
MlyI GAGTC 2 cut(s) 527, 752
MseI TTAA 2 cut(s) 234, 880
MspA1I CMGCKG 1 cut(s) 123
MspR9I CCNGG 2 cut(s) 92, 246
MunI CAATTG 2 cut(s) 522, 752
Mva1269I GAATGC 2 cut(s) 463, 863
MvaI CCWGG 2 cut(s) 92, 246
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 3 cut(s) 671, 838, 867
NlaIII CATG 4 cut(s) 52, 111, 556, 805
NlaIV GGNNCC 1 cut(s) 626
NmuCI GTSAC 2 cut(s) 52, 265
NsbI TGCGCA 1 cut(s) 820
PceI AGGCCT 1 cut(s) 846
PctI GAATGC 2 cut(s) 463, 863
PfeI GAWTC 2 cut(s) 331, 834
PkrI GCNGC 3 cut(s) 7, 122, 399
PleI GAGTC 2 cut(s) 526, 752
PpsI GAGTC 2 cut(s) 526, 752
PsiI TTATAA 1 cut(s) 810
Psp124BI GAGCTC 1 cut(s) 734
Psp6I CCWGG 2 cut(s) 90, 244
PspEI GGTNACC 1 cut(s) 52
PspGI CCWGG 2 cut(s) 90, 244
PspN4I GGNNCC 1 cut(s) 626
PspPI GGNCC 2 cut(s) 591, 624
PstI CTGCAG 1 cut(s) 259
PstNI CAGNNNCTG 1 cut(s) 263
SacI GAGCTC 1 cut(s) 734
SacII CCGCGG 1 cut(s) 124
SaqAI TTAA 2 cut(s) 234, 880
SatI GCNGC 3 cut(s) 6, 121, 398
Sau96I GGNCC 2 cut(s) 591, 624
SchI GAGTC 2 cut(s) 527, 752
ScrFI CCNGG 2 cut(s) 92, 246
SduI GDGCHC 1 cut(s) 734
SetI ASST 9 cut(s) 59, 105, 150, 275, 411, 443, 607, 634, 734
SfcI CTRYAG 1 cut(s) 255
Sfr303I CCGCGG 1 cut(s) 124
SgrBI CCGCGG 1 cut(s) 124
SinI GGWCC 1 cut(s) 624
SseBI AGGCCT 1 cut(s) 846
SsiI CCGC 4 cut(s) 121, 123, 685, 839
SspMI CTAG 2 cut(s) 597, 854
SstI GAGCTC 1 cut(s) 734
StuI AGGCCT 1 cut(s) 846
StyD4I CCNGG 2 cut(s) 90, 244
StyI CCWWGG 1 cut(s) 376
TaaI ACNGT 1 cut(s) 265
TaqI TCGA 1 cut(s) 417
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 2 cut(s) 331, 834
Tru1I TTAA 2 cut(s) 234, 880
Tru9I TTAA 2 cut(s) 234, 880
TscAI CASTG 2 cut(s) 268, 868
TseFI GTSAC 2 cut(s) 52, 265
TseI GCWGC 2 cut(s) 5, 397
Tsp45I GTSAC 2 cut(s) 52, 265
TspDTI ATGAA 2 cut(s) 347, 636
TspGWI ACGGA 1 cut(s) 632
TspRI CASTG 2 cut(s) 268, 868
VpaK11BI GGWCC 1 cut(s) 624
XapI RAATTY 3 cut(s) 320, 655, 715
XbaI TCTAGA 1 cut(s) 853
XspI CTAG 2 cut(s) 597, 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.